Array 1 29860-29585 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJKK010000045.1 Phocaeicola coprocola strain An767 An767_contig-115_44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 29859 47 100.0 30 ............................................... ACTAACACAGCTTATATTTTAGCAGACATA 29782 47 100.0 29 ............................................... GGCATACCCTGTTCTTCAGTTTCTTTTTC 29706 47 100.0 29 ............................................... AGTTGAAAGGACTCCCTGAAAGTATTATA 29630 46 78.7 0 ......C.............T.C.T.G....-.....T...T.T.G. | ========== ====== ====== ====== =============================================== ============================== ================== 4 47 94.7 30 GCTGTTTCCTATATCACAAAGTTACTAAATTGAAAGCAAATCACAAC # Left flank : AGATGTGTATAAGAGACAGGTGGTGGTCATTGATTCCAGG # Right flank : TTTATTTGAGAGAAAGTATTTGCTTTCATGAGTCTTATATTGTGGCAATTAATCCGATGATGTATTTAAAGTAAAAGAACCAATAACAAGCTTATGTCCTTTTCTTCAGATAAATACATCTCGGTAGTCCACTATATTTCAAGGCTTGTTTTATATACGTATATCCTAATTTTTCCATGTTACTGCGTGAAAAAGAATTTTCCGGATGGACCGTACATAACAAATAACGGTATTGGGTTTTGTGTAGGGCTTCTTCTGCCTGACTTATAAGTAAACGTTGTAGTCCGTAACCTCGGAAGTTGGGATGCACTGCTACCGTATCCATATGTGCTACACTGCACAACTCTGCTTCAGGTAGTCCGATGTCGTAACCTAGGTTCTCGGAATTTTTTCCGGGAAAGACGACAATGAATAATCCGGCAGTCTGTCCTGATACAGTTTCAATGGCTTTCCATATAATACCTGTGTGAGTAGACAATAGCGACTTTATATAATCTTTG # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTTTCCTATATCACAAAGTTACTAAATTGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 882-67 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJKK010000006.1 Phocaeicola coprocola strain An767 An767_contig-115_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 881 47 100.0 30 ............................................... TACTTTCGGAAAAAATACAGTAACTTTGCA 804 47 100.0 30 ............................................... TTACTACTTTTGCATTCTTTATAACCTGGT 727 47 100.0 30 ............................................... GATGATTGCAAAGCTGCCTTAATTGATTCA 650 47 100.0 30 ............................................... CTGGCACATAAAACAAACGCCTATCTTCAC 573 47 100.0 30 ............................................... TTATACTCATGACTCTTTTATTTTGGTGTT 496 47 100.0 30 ............................................... TCCTATTCCCTTGCTGCATAGTACCTTTGG 419 47 100.0 29 ............................................... TTGCATTTTCGTAATTACTGTTATTACCT 343 47 100.0 30 ............................................... CCTACTCAGTGGTGGTCATTGATTCCAGGT 266 47 100.0 30 ............................................... TATAAAGTTCTTCCAACGTCGGATATTTGA 189 47 100.0 29 ............................................... TATTCCCGGAAATATAAAGAAAAACAAAA 113 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 11 47 100.0 30 GCTGTTTCCTATATCACAAAGTTACTAAATTGAAAGCAAATCACAAC # Left flank : CTTCTTTATATAAATGCTTTAGCGGAGAACTTCGTAAAATTGCTTATCCTGAAATGTGATGGATAGATACAGTGAATATCGTGTTATGTGGATACTTGTATTTTTTGATTTGCCTACGGAAACTCAGAAGGACAAGAAAGCCTATGCATTATTTCGTAAGAATTTACAGAAAGACGGATTTACTATGTTTCAATTCTCAATCTATATTCGTCATTGTGCAAGTTATGAAAATGCAGAAGTTCATATCAAAAGAGTTAAATCTTTTTTACCAGAGTTCGGTCAGGTAGGGATTATGTGCATAACAGATAAACAGTTTGAGCAAATAGAATTGTTTTATGGGAAAAAGCCTCATAACAAAAATGTAGCAGGGCAACAATTAGAACTATTTTAGAAATAAGAAATCCCGCTTTTTATAGCGGGATTTTCTTGTAGGAAACATTTCTTTTTTATTTCTAATTTTAGATGTAATTTATTGTATCATATAGGATTACATAAATTGA # Right flank : CAATATGCAGGCTTATACTACGAAAGCTCAGGCTGTTTCCTATATCACCTGTCTCTTATACACATCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTTTCCTATATCACAAAGTTACTAAATTGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 58-488 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJKK010000176.1 Phocaeicola coprocola strain An767 An767_contig-115_175, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 58 47 100.0 30 ............................................... AATTTGCAGTCCCTTAAAGGTTTCCATCAT 135 47 100.0 30 ............................................... CTGCCTTGTGCTTATTGTATTTGCCTGTCT 212 47 100.0 30 ............................................... GTTATGCACCTCGGTATATTGATTGGAAAA 289 47 100.0 30 ............................................... TGATTATGAAAAAGAGAAAATTTCCACAAG 366 47 100.0 29 ............................................... CCGTACATTGGATCAGTTAATTCTTTTTT 442 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 6 47 100.0 30 GCTGTTTCCTATATCACAAAGTTACTAAATTGAAAGCAAATCACAAC # Left flank : GTTACTAAATTGAAAGCAAATCACAACTGAGTATGCGAGTGAAAACAGAAACAGAGGG # Right flank : CCTACTCAGTGGTGGTCATTGATTCCAGGTGCTGTTTCCTATCTGTCTCTTATACACATCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTTTCCTATATCACAAAGTTACTAAATTGAAAGCAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA //