Array 1 1024444-1020388 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR027880.1 Roseburia intestinalis L1-82 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1024443 36 86.1 29 T..C.G...T...C...................... CGCTAGGATGTGATCTTGATACCGTGATT A,T [1024428,1024433] 1024376 36 100.0 30 .................................... TCTTTGGAACAGGAATCACATCACCAGTCA 1024310 36 100.0 30 .................................... TTCCTAGATTGTACATCATTCATAATGCGA 1024244 36 100.0 29 .................................... TTTGGGAATTGCTCCGGAAATGACACCAT 1024179 36 100.0 30 .................................... GAATTTTATTTTTTAGGAGGATTCAAAATG 1024113 36 100.0 30 .................................... ACTACCATAAAACGCACCCTAAAGAGGTAA 1024047 36 100.0 30 .................................... AAAATAAAGTTTCACTGCTTTTCCTCGCTT 1023981 36 100.0 30 .................................... ATTTCCATTTTCAATATCTTTTATTTTAAC 1023915 36 100.0 30 .................................... TTTCGACCGTGAAACTTTCAAATATTGGGG 1023849 36 100.0 30 .................................... CGATGGCTGTAACGAGTTGCCTATATACAC 1023783 36 100.0 30 .................................... AGATCGGGGATGTAAATGTGGCAGTCGGCT 1023717 36 100.0 30 .................................... GCGGCATAATTAAACACCCGTACACTTACT 1023651 36 100.0 30 .................................... AACACCTCTGCAACAAATTGCAACATTTTT 1023585 36 100.0 29 .................................... TCATTAAGCGTTTTGAGGGTTTTCGTCCA 1023520 36 100.0 30 .................................... CAAAAATGATAAATTTGACATGTACAGAGT 1023454 36 100.0 30 .................................... GCGAAAAATATTTGACAATGGTGTAACAGT 1023388 36 100.0 30 .................................... AGCATGTTAATTTTTATATTGCCGTGTTTA 1023322 36 100.0 30 .................................... ACACAACGGCAAAACCGAGGAAGAAAAGAA 1023256 36 100.0 30 .................................... AGAACGTGAACCCTATACCACTAAAGGGAA 1023190 36 100.0 30 .................................... ACACTCATAGTCTGTGATTTGACCACAGAA 1023124 36 100.0 29 .................................... TTGAAAAGAGAATATAACTCTTTTCTTCT 1023059 36 100.0 30 .................................... ACGCACCTTTAATACCGTTAAGCAGTTTCA 1022993 36 100.0 31 .................................... CTGTGCCAATAAACACATTGCTACATGATCT 1022926 36 100.0 30 .................................... AACCCAAAACATTTTATGTGTTTCAGGATG 1022860 36 100.0 30 .................................... GAACCAAAAGAATATTCTTGTCCACCGACC 1022794 36 100.0 30 .................................... ATATTTTTCACGTTTATTTTACCGTGTTTT 1022728 36 100.0 30 .................................... AATATGCATTTCAGAGAAGATTCCATTATT 1022662 36 100.0 30 .................................... ATTTTGTCAAAGACAACACCTCCGTGTATA 1022596 36 100.0 30 .................................... AATAAATTAGTCGGTTTGCGCGGTATCATT 1022530 36 100.0 30 .................................... GGAGAGCATTATCGTAAAACTGATGGCAGG 1022464 36 100.0 30 .................................... GTAATAGCTTTTATTATTTCTAAATCAGTA 1022398 36 100.0 30 .................................... CACACCAAGACTTTTATCTCCATATTCAAT 1022332 36 100.0 29 .................................... AAATTTTATGATTCAGAAGTAATGAGTGC 1022267 36 100.0 30 .................................... TTATTATCCGCGCTTTACGTGCGTTCAATC 1022201 36 100.0 30 .................................... ATTATTAAACGGTATGAGGGGTGCAGATTA 1022135 36 100.0 29 .................................... TTCAAAAAGCGTTACCAGTCTGAAGCCAT 1022070 36 100.0 30 .................................... TATAAAACCTCAAACCGTAAATTAAGTATC 1022004 36 100.0 30 .................................... TCTATGGTTCGGTTGAACTTATGCGGTATC 1021938 36 100.0 29 .................................... CGAGGCTGACTGTTCGTCCGGTGTTGCTG 1021873 36 100.0 30 .................................... TGTCATCATCCGAGGCATACAAGAGCATTT 1021807 36 100.0 30 .................................... AAAATCAATTTCGATTAATTTTATTGACTT 1021741 36 100.0 30 .................................... TTTCATACTCAGCGTATTGCATTGTATTAG 1021675 36 100.0 30 .................................... TTCATGACTTTACTGATATAATCGGGATCT 1021609 36 100.0 30 .................................... TCTCAAACGTCAGATTCTCAAGCAAGTGGT 1021543 36 100.0 30 .................................... CAATACAAGGGCATACGGAACGTCATATTG 1021477 36 100.0 30 .................................... ACGACTGGGAACAGCGTTTGAATCCGTTCA 1021411 36 100.0 30 .................................... TAACCGGATAAAGTCAGTGTATGTTTGGCT 1021345 36 100.0 30 .................................... AATACGCCCACCATTCTCCCTGCTGGTTTA 1021279 36 100.0 30 .................................... AAGTGTGGTACTACAGTTTATGCCTGATAT 1021213 36 100.0 30 .................................... CTTTGTTACAAAAACAGGAGACTTTGTTTC 1021147 36 100.0 30 .................................... ATGGCAAATGTTTTCTTTTCTTCCTCATTT 1021081 36 100.0 30 .................................... ATTCTTTAAGCTCCATTCTTCGTAACGACA 1021015 36 100.0 30 .................................... ACGCTGCTAAAAAATAAGGGACGCAAATTT 1020949 36 100.0 29 .................................... TTTTGCATTTTTCTTTATGTTCTCCCTGC 1020884 36 100.0 30 .................................... ATCAGCAGTCAATAATATTTCAACCTGCAC 1020818 36 100.0 30 .................................... ATGTTTATTGTTGGTATGTCCGGTGGAGTT 1020752 36 100.0 30 .................................... ATATAATTCGAACAATGCAAGTTAATATTT 1020686 36 100.0 30 .................................... CCAACAGTACTTGCACCGTAGCCACTTTCT 1020620 36 100.0 30 .................................... TTTAAAAAAATATTATTTAGACGGGTTTGA 1020554 36 100.0 30 .................................... GAATCGTCAAGAGGCTCAAGAATGGAAAGT 1020488 36 100.0 29 .................................... GGATGACGTTCATCCCGTATGACTATGAG 1020423 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 62 36 99.8 30 GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT # Left flank : TTTATTGTAACACTCTTCATTTATGAGTTCTACCCCTAAAAAGTATCGTTTTCATTCTGTTTTTCTTTTTTTTCGCCGCAGATCCGCACTCACATTTCTATTTCGGTATCCAAAATTTCTGTTAAATTTTTCTGTTAAATTTTTTCAAAAAATTGTTGACAAATTACTTTTTCCATAGTATGATATTAAATGTGTCTGGCAGACAGATACAAAACAATTTACATATGCGCGAGTGGCTCAGTTGGTGGAGCACGACCTTGCCAAGGTCGGGGCCGCGGGTTCGAGTCCCGTCTCGCGCTCTTTAAAAGCTACAATACAATTTCATATATGCGCGAGTGGCTCAGTTGGTGGAGCACGACCTTGCCAAGGTCGGGGCCGCGGGTTCGAGTCCCGTCTCGCGCTCTTCTGTTGAGAAACAGGAAACTTTGATTTACAAGGTTTCCTGTTTTTTTGTTGTAGTGTAAAGGTTGATTACGGTTTTTCCGTAATTTCAATATACT # Right flank : AGGGAGCACAAATCCCCACGAACTACAGGGATTCGTGGGGATTTCATCTAAAAAAAATCTTTAATTTGGAAGTTAAATTCTATCGAAAATCTTCTTTTTTCAAAAAACATCCATTAATTCTATTGATTCCGGGGTGTCATCGAACGTTTTCGTTCCTAACATAATTTCCATAGATTCATACTGCTTTTCTGTTAAAACCAGCGCACGTACTGATCCTTTTAAGGGCAGATTTTGTTTTAAACGCTGTTTATGCATTGCAACTGCATCCATACCATTGCATATCCTGGAATATACAGACCACTGCACCATATTGTAGCCATCTTTCAATAAAAACTTACGAAATTTTGCGGCATCCTTTTTCTCTTTTGCAGTTACTACTGGCAGATCAAAAAATACTAACATTCTCATAAACCTATTCATAGCTATGTACCTGTAATTGCATCAGTTCCGGCAACTCCAAATCTGATCTTTTTCCCTGCAGAGCACTACTGTAACTTGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1222931-1223608 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR027880.1 Roseburia intestinalis L1-82 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 1222931 36 97.2 34 ....................T............... GGTAGCTTTTTATTTGATGCTGCAGGTTTTGAAG 1223001 36 97.2 33 ....................T............... AAAACATCAATATCAGCGTGTAAGTCCTCAAGT 1223070 36 100.0 34 .................................... TCCGCGACAGCTCTGCAAAAAAATCATATCCCGG 1223140 36 94.4 36 ....................TT.............. ATATTCTCCCTTCTGTGCAATAAAAAAGACAGCCTA 1223212 36 100.0 37 .................................... TAGATCCGTGATGGTGTTTTAGCTTTTGCAATTTCGT 1223285 36 100.0 37 .................................... TTGCCTGACTTATCTGTATAGTTAAAATCGGAGAATT 1223358 36 100.0 37 .................................... CTGTCTCAGGAACTTTTCATCCGACTGGTCTAAACGG 1223431 36 91.7 33 .....G...AG......................... TGACGCATTTCTTCTATTGTTGGCATAGTTGTT 1223500 36 91.7 37 .....G...AG......................... ACTTCCTGAATTTCAGTCTTAGGAACTTCTACATAAA 1223573 36 88.9 0 .....G...AG...........A............. | ========== ====== ====== ====== ==================================== ===================================== ================== 10 36 96.1 35 ATTGAAATATAAGAACCCCGAGGAGGGGACGAGAAC # Left flank : TTGACACGACAATCTGCCCGTATCAGATGGAAGATATCATAGAAGCACTGAATATTTTCCAGAATATCTGTAACCGGTATTTTTATGCAAGATTCCACTGGGAGGCAAAGGAAAAAAATACAGTATGGTTAGGTGGAGGATGTGGTTTTCTTTCAAAGACGGTTTTATATCCATTGCTTGGCAGTAATGCAGTAAAAGTTGTGGATAATGTGTTTAAAAATACACTGGGAAAAAATTATATTGTGCATAAACATACCAAAGATCTGCAGCTTAAGCTGGCACCGCATGCCTGTAAGTGTACAAAGTATCAGGGAAAGCTGTATCATATGGGGATGGGGAGGATTGAATTTGAGGAAATATAACAATTTTGCGCCGATAGGCTTAAAATCAGGCTTTGTGATCGGTATGATCCAGTTTGATATTGAGATTTCTCTCATTTGCGGGTTTGCCCCGCAAATGGGGGATGAAAGCCTTGTGTTTGGAGAGGTGTAAGGGACAGG # Right flank : CCTTTAGCTGTTTTTGTTATATACTTACACAAGTATAATTGAAAAAATTTCCACTAAGGGGACAAATAAAAACAAGGGAGGAAACACATGAGTTATCTTTATGTCAGTGAACAGGGTGCGAGTATCGGGATAGAAGCAAATCGTTTTCAGGTAAATTACAAGGATGGAATGATAAAAAGTATTCCAGCTGAGACGTTAGAGATGATCGAAGTATTTGGCAGTGTCCAGATTACGACACGCTGCCTGACGGAATGTTTAAAACGGGGGGTGAATATCCTGTTTTATTCCACAAGCGGGGCGTATTATGGAAGGCTGATCTCAACTTCCCATGTGAATGTGCAAAGACAGCGTATTCAGGCGGAAATTGGACACAATGAAACATTTAAACTGGAAATGTCAAAAAGAATCATTGATGCAAAGATTCGCAATCAGGTTGTTGTTTTGCGTAGATATGCGCGAGGCAGAGATGAAGATATTCATAGAATGATCATTGAGATGCA # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATATAAGAACCCCGAGGAGGGGACGAGAAC # Alternate repeat : ATTGAAATATAAGAACCCCGTGGAGGGGACGAGAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 3 1225355-1226170 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR027880.1 Roseburia intestinalis L1-82 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 1225355 35 100.0 35 ................................... TTGCACAGCGTATGGAAAATCGGATTTACCGTTAT 1225425 35 100.0 36 ................................... TGTACTGTTTGCCATTCCTAGAGTGACAAGCAAAAG 1225496 35 97.1 36 .............C..................... TTCCACCGCCTTCCTAGTTATAGTATAGCGGATTTA 1225567 35 97.1 36 .............C..................... TACGAAAGTACAACAGTGTGAGGCGCACTAGGTAAG 1225638 35 97.1 36 .............C..................... TATGGTGAATATAGTGCGTTCATGTATCAATGGCAG 1225709 35 100.0 38 ................................... TGTTCCAAATCTGCTTGCCACATTCGTCACGGTCATAT 1225782 35 97.1 36 ...............T................... TTCCAAGTCGTTGTTACTTGACTTGTTTAAAGTGTA 1225853 35 100.0 35 ................................... CCTATGCACTATTCTTTTATTGTATCAAGTTCTGT 1225923 35 100.0 39 ................................... CTCTACATAACAGTCGCAAATACGGGAAAATGTGCAGTC 1225997 35 94.3 36 ..............T......G............. CGTAAAGCCTTTATTCAATTATCAATGTACTTGAGA 1226068 34 91.4 34 .........TA.........-.............. CCAGATGGGTTTGATTTTTCTTGCATCTTCCTGA A [1226091] 1226137 34 88.6 0 ..............-.....AG..........A.. | ========== ====== ====== ====== =================================== ======================================= ================== 12 35 96.9 36 ATTGAGATAAGAGACCCCCGTAGAGGGGACGAGAA # Left flank : TTTTCGGGTTCAGAAATCGGCATTTGAGGCGATGGTTACGGAAAATTTATATCGACGTTTGTTACATGATATTCCGGAGCTGATTGACCGTAGATCGGACAGCGTGAGAGTTTACAAAATAAGAGGTTATGGAGAAGTCAGCCTGTTTGGGGCAAGTCCTGAAATTAAAAATGAAGAAGTGATTATTATAGGGTAATATGACAAAAGATATATTATAAATACACTGGGCAGAAATTATGTTGTGCATAAACATACCAAAGACCTGCAGCTTAAACTGGCACCGCATGTCTGTAAATGTACAAAGTATCAGGGAAAGCTGTATCATATGGGGATGGGGGAGGATTGAATTTGAGGAAATATAATGATTTTGCTCCGATAGGCTTAAAATCAGGCTTTGAGAATGTTATACACCAGTTTGATATTGAGATTTCTCTCATTTGCGGGTTTGCCCCGCAAATGGGGGATAAAAGCCTTGTGTTTTGGGAGGTGTAGGGGACAGG # Right flank : ACTTGAAAACCTGCCCCGGATAAATCAAATTAGGGTTTACTGAGATATAAGAACCCCGCTAAGGGGACAAAATTAGAATAAATTTTTACTAAATAACCATGCAGGAAAATTAAATCATTATTACGAAAGATGGAGATTATTATGAATCAGACGATATTGTTTACACCAGTGGGAGGAACCGACCCGATTTCATTAAATAATTATCATGATGGATCAATACTGCATATTTGCAGATTCTATAAACCGGATAAAGTCATTTTGTACATGTCAAAAGAGATGTTGGATTTTCAGGAGAAAGATGACAGGTATCGTTATTGTCTGGACCGTCTGGCAAAGATGCAGGATCGTCCCATGATTTATGAGATCATAGAACGCCGGGAGCTTACCAAAGTACATGAATTTGATTATTTTTACGAGGATTTCAGGAAGGTGATCAGCCATATATATGAGACGATGGATGATTCAGATACACTGCTTTTAAATGTGTCATCCGGTACACC # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAGATAAGAGACCCCCGTAGAGGGGACGAGAA # Alternate repeat : ATTGAGATAAGAGCCCCCCGTAGAGGGGACGAGAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //