Array 1 277372-281398 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJJH01000001.1 Methanohalophilus portucalensis FDF-1 strain DSM 7471 Mp7471_scfld_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 277372 37 100.0 38 ..................................... AAGAGGATCCTGATTTACTGGAAGAAGAAGTGGCTCCA 277447 37 100.0 36 ..................................... GTTTGACATATACACTCAGGAATTTCGGATACAGGC 277520 37 100.0 37 ..................................... TCCATTACATAATCTGCAAGGGTTTTTGGTTTCAATC 277594 37 100.0 36 ..................................... AACATGGAATTATACTATTAAAACATGGAATTAAGC 277667 37 100.0 36 ..................................... CCAGAGCACCGAGATAACTGACGGTACTGGAATGAT 277740 37 100.0 36 ..................................... TGATCCAGTGGTATGCATCAATCGGATTGAATGACA 277813 37 100.0 38 ..................................... TGTCTGCAACATATATATACCTTGTTCCTATTACCAAT 277888 37 100.0 38 ..................................... TCAGGGGCTTTGAAGTTGAAAATAGATTTTGCATCTAT 277963 37 100.0 37 ..................................... CTGTCCGTAGCGGCCGGTGCGGCGGCTGTAGGATATG 278037 37 100.0 36 ..................................... TGTTCCTCTGGGCTGGTGGCTTCTGTCATAACCTTT 278110 37 100.0 36 ..................................... TTTCATCAGATGCTGTGTAGAACTTCCACGATTCAT 278183 37 100.0 35 ..................................... CAACATCGTTGGATCGCATGAAAACAGTTAAATCC 278255 37 100.0 36 ..................................... CATCTATACAGATTACAAACAGCCTTACAGGATTTC 278328 37 100.0 35 ..................................... TAGAATTCCTTTGCTTCATTGACAAACTGGCGAAA 278400 37 100.0 38 ..................................... CTATTTATTTTGTTATGGCTGTCACGCAATGCGGCAAA 278475 37 100.0 35 ..................................... TCCTCTTTGTACTTGTAGTTCAAGGATTCTTTCTT 278547 37 100.0 46 ..................................... TGCATAGTCGAAGCAATATGGATATACTTGCTCAACAAGCAACTCA 278630 37 100.0 38 ..................................... CAATCTTTTGTTTCCTTCGCCGAGGGAGCAAGGGACGC 278705 37 100.0 35 ..................................... ACGATTTTGTAGCCGTATATGACGGATGCGGGTTC 278777 37 100.0 38 ..................................... GATACACAGAAGAAGGCCTCCGATGTTGCCACAGCTGT 278852 37 100.0 37 ..................................... CTATCTTATAATACTTGGTTTGCCGTTCTTTATGTTG 278926 37 100.0 38 ..................................... TTATAGTGTCGGTGCTATAAGCTTAAAGTTATAAAATT 279001 37 100.0 37 ..................................... TAGTTTGCGTTGCCATGGAAGGGTTGTAACTCATCTA 279075 37 100.0 37 ..................................... TCTTCAATAGTTAAATAATATGGTTCACCATCAACAT 279149 37 100.0 37 ..................................... CATATGCATCTACACCCTTTTGTTGAGGGTATAACGG 279223 37 100.0 32 ..................................... CTCTCTCCAATTGTTTTGAACGTCTTGCTTCA 279292 37 100.0 36 ..................................... CCGCATACTATACACATTTCACTCATGGTTCTCTAT 279365 37 100.0 36 ..................................... CAAGGTTCTCCAGTTTCTTGCAAAGGGTAATATACC 279438 37 100.0 37 ..................................... ATAAGGTCCTCCATATCTTCTGATATATCCACATCAT 279512 37 100.0 35 ..................................... TTAAACGGTGACTGTCCAAGAAAATCCACGTTCAA 279584 37 100.0 35 ..................................... ATCATGTAATGTCTGGTAGAAAATTAGGACATAAG 279656 37 100.0 36 ..................................... AATATATCGGCAGTATGTGAGCAGGCAATTCTAAAA 279729 37 100.0 37 ..................................... CCTGTCGTTTAAGCGGATCGCACATGAGGAGCTCGAA 279803 37 100.0 40 ..................................... TTCGGGTAGGCAAGAACGAACTGTATTATCTTGCTCTTGA 279880 37 100.0 35 ..................................... TGTGTTCATGACTGTCGTTGATGCTGACGGTTCTG 279952 37 100.0 45 ..................................... TCCGAATTCTCCAGGCTAACTCTTGCATGTAATATACAACGACAA 280034 37 100.0 36 ..................................... CTTATTATGGTATGTCTCCAATACCTGTTGTATCTT 280107 37 100.0 34 ..................................... TTCAGACTCTCAATACATCAGGTGGTGGCTCAGT 280178 37 97.3 35 .............G....................... ATCAATATTCAGGCACAATGGAAGAGCGTATTAAT 280250 37 100.0 37 ..................................... TCTTGCTTTCTACATCTTGTCTGGAATGGGTGTGTTG 280324 37 100.0 37 ..................................... CAGAATGCCACATCATTTCTGATACGAGGCACAAGTG 280398 37 100.0 34 ..................................... TTAATTGCTTCAGAACCTTCAGCAATTACATGGA 280469 37 100.0 35 ..................................... TTTGTGTTCTTCCCATGTGTGCATCTCTCCGTCTC 280541 37 100.0 36 ..................................... CCGCATACTATACACATTTCACTCATGGTTCTCTAT 280614 37 100.0 36 ..................................... CAAGGTTCTCCAGTTTCTTGCAAAGGGTAATATACC 280687 37 100.0 41 ..................................... TTTATCAAGTTACAAATCATATAAGGATGAAGTCCGACAAG 280765 37 100.0 38 ..................................... ATGAGTATGGGATCGCGATTTTTTGCCACAAACAAAAA 280840 37 100.0 41 ..................................... TTTATCAAGTTACAAATCATATAAGGATGAAGTCCGACAAG 280918 37 100.0 32 ..................................... ATGAGTATCAACAGATATTTGTTAATAACAAT 280987 37 100.0 36 ..................................... TTAATCTGTTCTTGCTTCCCCTCGATCTCCTGACGC 281060 37 100.0 47 ..................................... GTCTAAGCATGGTCTTAAGCATGGTCTAAGGTTAGTTTAAGCATGGT 281144 37 100.0 35 ..................................... ATTGGTACAGTAGCAGGATTTCTAGCAAAAAGGAG 281216 37 100.0 35 ..................................... ATTGGTACAGTAGCAGGATTTCTAGCAAAAAGGAG 281288 37 100.0 37 ..................................... CATCTATACAGATTACAAACAGCCCTACAGGGTTTCT 281362 37 97.3 0 ..................................G.. | ========== ====== ====== ====== ===================================== =============================================== ================== 55 37 99.9 37 GTCAAAATTCAATATCCACTAAAACAAGGATTGAAAC # Left flank : ATCTAAAGAAAGAAATGTTTTTGTTGCTTCAAAAGAGAATCACATTAAAGGAATTGTTGATGAAGTACTGTTTCTCGAAGATGGAACAGCTGCGCCTCTTGAATATAAGTTTGCAGAATATAAAGACAAAGTTTATATGACTTATAAATACCAGCTTTATTTGCAGGCATTGATGATCTCCGAGAATTATGATGTAGAAGTCAATAGAGCTTATATTTGTTATACACGAAGTAATAATATGGTCAAGTCTATTAAAATTGAACCGGAGGATGTGGATGAAGCCATAAAGATTGCCAAAAAGACAATTGATATAATAGAAAAGGGAGTATATCCAAAGGCAACAAAGTATAAATCCAAATGTATTGATTGTTGTTATAGAAATATTTGTGTATAATTCTTGTATTTATAAGGGATCTGATAGAAATGGTTCAAGAATTGAGATGCTTGAAAAGGAGGGATATTAGGGCTTCTTTTGGACAAAAAAGGGTGAAAGTTGTGCT # Right flank : CTATAATATGAAATAGTAAATTATACAATATAGGAGAATACCATGACCAATGCTAATGAAATTATAAAATATCTTGATATGAGCAAGCACCCTGAAGGTGGGTATTTTAAAGAAACTTACAGATCCGGGGAAACGATCAAGCACAAATACCTACCAAACAGATTTACCCTGGATCATGCATTTTCCACGGCAATTTATTTTTTATTGAAGAAGGGCGAATTCTCAGCACTTCACACAATAAAACAGGAAGAAATCTGGCATTTTTACAGTGGGGCACCCATTGACATACATATGATTCATCCAGATGGCGATTATGAATCGATCCATCTGGGAAACGACATATTGAATGGTGAAGTACCACAGGGTGTTGTCCCTGCAGGTTCAGTCTTTGGCGCAACAGTCTGTGACAGTACCAAATATGACTATTCTCTTGTGGGATGTACGGTTGCACCAGGTTTTGAATTTGAGGACTTTACCCTTCATAAGAAAGATGAATTACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAAAATTCAATATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA //