Array 1 1457634-1458516 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027190.1 Lactobacillus sp. CBA3605 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1457634 29 96.6 32 ............................C TCGTATAGCCCATTCATTTGCTCTTCAACGCT 1457695 29 100.0 32 ............................. TTGACTGACCCATCCGTCCCATTTATGATTAG 1457756 29 96.6 33 ............................A AGGGACCGCACTAAAAACCTGTGATATCAGTAG 1457818 29 96.6 32 ............................C TAACCGTCCTAAATATGTGGTCGACTGGGTCT 1457879 29 100.0 32 ............................. TACTTGCTTACTACTTATATACTACTACCCCT 1457940 29 96.6 32 ............................C GTCAGAATTAAGTTCATCCGTAATCTCCACTG 1458001 29 96.6 32 ............................C CTTATACCTATACTACTACTGTTACTACTAGG 1458062 29 100.0 32 ............................. AAGTATCTGCCAACTTTTTTGACTGAAAAACC 1458123 29 100.0 32 ............................. ATAGAAGCTTCTAGTGAGTTAGCCAGCTCATC 1458184 29 96.6 32 ............................A TTACACTGACGTCAAAACACGAACCGCATTTA 1458245 29 100.0 32 ............................. CACACCACGTGCTTTTAACATTTTGTGAAATT 1458306 29 100.0 31 ............................. TTAACCTACAGAGCCCGGCCATGGACGGAAT 1458366 29 96.6 32 ............................C CTTAAGGACGACTACCTTTATCTAAGCCTAAA 1458427 29 100.0 32 ............................. TGCAGTTCCCGTCTTCGTCTCGCTCAATCAAA 1458488 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.2 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : AAGGGCAACGAATTCTCGACAAGATTAAAGATCGCGATTATGTGTACGCATTAGCCATTTTAGGTAAAGAGCGCTCCAGCGAAGAATTCGCAACGGAAATCGATAAGTTAACGACGTATGGCCATAGCGATATTGATTTTGTGATTGGTGGTTCATTAGGCTTGGCACCAGAAGTTTTGCAGCGGGCCGATACCCAAATTTCGTTTGGCCGTTTTACGTTACCACATCAGTTGATGCGGTTAGTGTTGACAGAGCAAGTATATCGGGCATTTATGATTAACGTCGGTAGTCCTTATCATAAGTGATAGGTAGTATGGGGTGTTTTGTGTTTTAATGAGAATTGGTTGTGCTGGTATTTTCAGAGTACAAAGTTGTGACTAGTTACTATGCAGTAGGTTGGTTTTAAGATGAGCCATTTTTTATGGACAATTTAAAACCAAGTTAATGTAAATCAAGGTTTTTAAGAATTAGGAACGTTGCTATATCAAGGATTTTTTAGT # Right flank : CGATGTACAATAACATAAAAAGGGGGCAAACACGATGATAACTTTAGCAAACGAAACGATTAAAACTAGTTATGCTAGAAAGCAACAGCGATCCGATAAATTTGTTGATCAACTCGTAGAACACGAAATAATCATATATATATTATATGGACTAATAACCTTTATCCAATTTTTTTTCTGGGTATCGTTTAACGGAACCTGGTTTGCAGAACACTATGCAATATTTGTGCTAATTTATATCGGCACATTCTTATTCAGACGCACTGCAATCAAAGAACAGCTAGTTTTCAAAAATCCTTTTAAAGCCAGTTTGTTTTTAGTAACAGACATTATTTTAACGTTAACACTTACCCCAATTGTATTTTTCCGAAGCATCCCATGGGCTGTAAGAACAATAATAAATTTACCAAAATATCAAAAATGATGTACATGATTTTATCATGTACATCATTTTTTTTATCGTGTACATAATAAGCCACGCATTCCTTAAAAATTAACGT # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1469527-1469799 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027190.1 Lactobacillus sp. CBA3605 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1469527 29 96.6 32 ............................C ACATGATTGATCGTAATATTGATCGTAAAGAA 1469588 29 100.0 32 ............................. ACAGTCAAAAGTAGAGTGACCGGTGCATGGAA 1469649 29 96.6 32 ............................C GTATCGGCTGCAATCCCTTTGATATCATATTG 1469710 29 100.0 32 ............................. CATATCACATAAAGTTGCTTTGGCAAGAAAAT 1469771 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.0 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : CGGCTAAAGATGCAATTATATCAATTGGCGCAGTTAGACGATTAGCAGCGAATCAAGTAGATCATTTTTATCAGTTAATCCAGGTTAAATCAGCAGTACCAAAGAAAATTACGGCCCTAACGCAGCTGACTTCTGAAATATTGAGTGTAAACGGTGTTAGCTTAGCTGCGGGGTTACAAGCATTGCAAGTGTTCGTCGGTGATTTACCAATCGTGGGTTACAATTTACGATTTGATGAGCTCTTTCTGACAACTGGTTTTGAACAAATCGGGCAAGCTGATTTACCTAATCAATGGTTAGATTTACTACCGATGGTAAAAAAGTCGAATAAATTTTTAGATAATTACCGACTAGCAACTGTATTGAGCGAATATGGTATCGAAAATAACACGCCACATAATGCACTATCAGATGCGACGGCAACGTTCAAGTTAGCAGACAAGTTAATTGAAAACAGGGTTTTGAAAATTTAAGAACCGCGGTATAACAGTGATTTTTTA # Right flank : TCAATGGCATTGATGTACTAAAGCAGATTTTTTTGCTCTCGGCGCCCAAAAATCAATTTGTAGACAAAACAGTTAGTTTTTAATACGAGTTAAGTTAAAATTTAAAATGAAAAAAATTTTAAATTCAGATGGAGGTTAATATCATGCCTAAAACAACTAAAGAACAAACTACCTATACCATCAAGATGTCACGCCAAGGACAATTCACGATTCCTGCCGAATTACGTCGCGAATTAAATATTCAAGGAGGCGATGAAATGTTAATCAGAGAAGACAAGAACAGTAATCTTGTACTAGAGAAAAAACCAACTGCTACTGATTGGGAAAACGCAGTCGCCGGGCTTCCAATTGAACGCGTTGTACTCAATGAAGATGGCTCAGTTAATGCTAAAAAATCTCCCTTCTTTGCAAACTGGATGAAAGAGGATGACTACAGTTAATACTGACGCTTTCGCACATCTACGACCACAAAATATTGTATTAATCAACTCACTAATGAT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2072475-2074456 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027190.1 Lactobacillus sp. CBA3605 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2072475 29 100.0 32 ............................. AACGGAAACTCTTGGTCATCCATGATTTCAAT 2072536 29 96.6 33 ............................C AATCCAGTCGCCATAATGAATTTCAAGTTCACC 2072598 29 100.0 32 ............................. ATCATCATCGCATGTTATATCACAGCGAAAGC 2072659 29 96.6 32 ............................C AGCTTGAATAGTCATAAAAATAACCTTAATGA 2072720 29 100.0 32 ............................. TACCCTCATGAACTGCCCGCACTCGTTGAGTA 2072781 29 100.0 32 ............................. AACACGTATAAAAGTCGGGACGCACGCCAAAA 2072842 29 100.0 32 ............................. GTCTGTTACTCTCGGTTTGCTCATACTTGATT 2072903 29 96.6 32 ............................C TCATATTTTTTTAACATTATTCCCACTCCAAA 2072964 29 100.0 32 ............................. ATTGCCGAGCCTATAAAACCTAAAAAAAGTGC 2073025 29 100.0 32 ............................. AAGTCATCATCAATCACGTTCATGAGTAATCC 2073086 29 100.0 32 ............................. ATTTTTAACATGCTCTAAAATTCATCATTCGA 2073147 29 96.6 32 ............................C GGCTAGGACTATCAGAAAAACGTTTATTTTTC 2073208 29 100.0 32 ............................. TAGTTCGTCAATAGCAACGCCCGACAAGTCTT 2073269 29 100.0 32 ............................. AGCTTGCTTATAATATGGAATATTTACTTTTA 2073330 29 100.0 32 ............................. ACGACGGTAAGTCGGATATTCCCGGATGGAGA 2073391 29 100.0 32 ............................. CCGGTGTCGGCTGATTGGTAGCAAGGATGTTA 2073452 29 100.0 32 ............................. GGTGTTTCAACATTTTTAAGTGGTTTATGGAG 2073513 29 100.0 32 ............................. ATTGGCAGGTAACTGAGTTAAGTATAGATGAC 2073574 29 96.6 32 ............................C CTTATTCCAAAAATCTGCTGCATTTTGGTTTT 2073635 29 96.6 32 ............................C CAGACCAAGCACCATCAGTGCCGACTTTAGTA 2073696 29 96.6 32 ............................C GTGGAAAGTTTGAAACCATTACCGATGGATAC 2073757 29 96.6 32 ............................C TTGACTGACTAGGCTTTACACGAAGATTAATT 2073818 29 100.0 32 ............................. AAATTAGGAGGACATAAAAATGACAAACAAAA 2073879 29 96.6 32 ............................C ATTTCCGGATAAAGCTGTGACACGGCACAAGT 2073940 29 100.0 32 ............................. ATGCTTTATGAAAATAGTTATATCGCTTGACG 2074001 29 100.0 32 ............................. TTTCGGACCTTAGTCATATCCTTCATCGGAAC 2074062 29 96.6 32 ............................C TCCTAATCTTGCGGGAGTTATATGGCATGACA 2074123 29 100.0 32 ............................. TAGCACTTTATTTTTTGGACTACGAAGCTCAG 2074184 29 100.0 32 ............................. GACGCCTATGTAACGGGGGTGTTTTGATGGCT 2074245 29 100.0 32 ............................. TAAATGGAGTCTCTTCATAATCGGGGCGGCAA 2074306 29 100.0 32 ............................. AATATAAACATTTTTCTATAAAATATCATTGA 2074367 29 100.0 32 ............................. TTACAAGTATGTATAAAGTAGGCGGATTAGAT 2074428 29 79.3 0 .C................A.T....GAT. | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.3 32 GTATTCCCCACGCATGTGGGGGTGATCCT # Left flank : TAGTCTTGCATTTGAAATTCTGGAGTAAAGTTAAGCCGGCATTGATGAATGGAAATGTTGCTAATGGGTATGTTGATTATCAACACCCGACGGCGGCGTTGGCCTTTATCCAGGCGGTCTTTCAGCAGCAAGCAGCGTTACGAGCGCTGACGACTACGGCGGTACCTGCCTATTTACAGACAACTTTTCAGGTACAACCGTATCCTGAAGCAATGGCAGTGCAGCAGCAAATTGATCGAGAAATTTTGGATAATGGTATTACAAGTGTGCCAACATTGATTATGGCCGGAAAAGCTTATTTTGATGAACAATTACTGCCAATTGAACAACTGCTTTAGTCAGTATCAGAAGTGTAGTTAACGATGTAAAGAATAAAATCGTGATTGTTAATGGGTCATTGCTGTTGTATGCTTTAAAATATAGGGCAGTTTAAAAACCAAGTTAATGTAATTCGGTGTTTTTTGAAATTTAGAATGCTGTTATATCAAGGATTCTTTAGT # Right flank : TCTACAACGGTCAAGTCCGACTGAGTTGGTTTCATTATGGGCACTGGCTGATAACATTAGCGACAAAGAAGCAAAGAATCAGGTTAATCGTTACTTATCTGTCATGTCTGCTAAGGAGCGTATAACGCGGTTAGAAGAGCTTAAGGTTAAGTTTTGTAAATTTGCTGTGAAGCAAGTTGGTAGTGTTGAACGTACTCCCTCGATGAACCTTTATATCAAAGTTATTTAGATGTTCTTGCTCAGCTTAAAGATGGTAAATTGGTTGAACGTCGCTACTACGGTAGCACTGGAAGACCATGAATAGATATTGATTATACTACCACGGCAATGCTAAGAAGTACCCGGTTGTGCCGCATGCGCATGCTCAGAGTTACAGTGAACGTGAGAACATTGAAATACAGGTTCATCAACCACCATATTGTAAGTTAACCTTTGCAGAAAGAATTGTGAATATTGATGATACTAAAGAATGTTATTCTCCACGCATGTGAGGGTGATTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCATGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //