Array 1 44351-43127 **** Predicted by CRISPRDetect 2.4 *** >NZ_OACM01000004.1 Neisseria meningitidis strain Neisseria meningitidis isolate R808, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 44350 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 44284 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 44218 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 44152 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 44086 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 44020 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 43954 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 43888 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 43822 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 43756 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 43690 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 43624 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 43558 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 43492 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 43426 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 43360 36 100.0 30 .................................... CAAAGCTGCGGTATGTCGGGATTGTCTTCA 43294 36 100.0 30 .................................... GTTGCACTATTATTCATTGCATCATCATTA 43228 36 100.0 30 .................................... TGCGGTTTGCAACCAAACGCATATATTTTT 43162 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //