Array 1 166465-164868 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGWA01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain C_NS-026 NODE_2_length_615563_cov_32.4524, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 166464 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 166403 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 166342 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 166281 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 166220 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 166159 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 166098 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 166037 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 165976 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 165915 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 165854 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 165793 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 165732 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 165671 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 165610 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 165549 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 165488 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 165427 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 165324 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165263 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165202 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165141 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 165080 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 165019 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 164958 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 164897 29 96.6 0 A............................ | A [164870] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 183849-182723 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGWA01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain C_NS-026 NODE_2_length_615563_cov_32.4524, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183848 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 183787 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 183726 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 183665 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 183604 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 183543 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 183482 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 183421 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 183360 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 183299 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 183238 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 183177 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 183116 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 183055 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 182994 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 182933 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 182872 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182811 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182750 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //