Array 1 1339-91 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMV010000252.1 Salmonella enterica subsp. enterica serovar Anatum strain 1000 NODE_257_length_1408_cov_5.92743, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1338 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 1277 29 100.0 32 ............................. GCCGAAGCCATCAAATCAAAAACAAAATTATC 1216 29 100.0 32 ............................. GTTGTAGCGAATTGCCCGCTGTATCGTGTCGT 1155 29 100.0 32 ............................. GATTTTGATATCCACTGCCCACCGGTGGGGAT 1094 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 1033 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 972 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 911 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 850 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 789 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 728 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 667 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 606 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 545 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 484 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 423 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 362 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 301 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 240 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 179 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 118 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 87-909 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMV010000287.1 Salmonella enterica subsp. enterica serovar Anatum strain 1000 NODE_297_length_916_cov_6.37209, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 87 29 100.0 32 ............................. GCCAGGGGTTCAGGATTTCGGATATTGCTGAC 148 29 100.0 32 ............................. CGACGCCTCTTTTTTCTGTACCTTTTGCCGGT 209 29 100.0 32 ............................. CACCTGGCGCCAGAAATATTCATGGTAATCGG 270 29 100.0 32 ............................. AGGCTAACAGAAACATAGCTGATAGTTGGCGC 331 29 100.0 32 ............................. TTTGCAGGACTGACCGTTACTGCCAGACCAGT 392 29 100.0 32 ............................. TCACGGTGGAATATTGCAGCAAAATCAAAAGA 453 29 100.0 32 ............................. GGTACTTTCGATACCAATAAGGACCGGATTAC 514 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 575 29 100.0 32 ............................. GCGCGGGAACGTGGGATGATGCCAGGACCATC 636 29 100.0 32 ............................. TGGTCGAGGAGGGGCGGGCGATCACTGAAAAA 697 29 100.0 32 ............................. TGGCCACAGTCTGGTTGTGTTGTTGGACGACA 758 29 100.0 32 ............................. AAACGGCGCTCGTTTCAGCGGCAACGGCTGTG 819 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 880 29 96.6 0 ............T................ | A [907] ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGTG # Right flank : TTTCACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2419-2936 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMV010000012.1 Salmonella enterica subsp. enterica serovar Anatum strain 1000 NODE_12_length_84865_cov_65.9381, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2419 29 100.0 32 ............................. GACCACGACTGGAGTGATCAGATCGGTGTGGT 2480 29 100.0 32 ............................. CGAGCGGTACAACTCCAGCATTAATCCCCACC 2541 29 100.0 32 ............................. CGGCGAATCAGTACGAGGGACGGCTGGCGCTG 2602 29 100.0 32 ............................. CGGTTCCGTCATTGCAGATCCCCCACTTCATC 2663 29 100.0 32 ............................. GACGCGTCTTTTCCACAGCAGGACTCTAAATC 2724 29 96.6 32 .............C............... TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 2785 29 96.6 32 .............C............... GAGCGGCTAAACGATGAATTAACCAGGGAGCG 2846 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 2907 29 93.1 0 ............TC............... | A [2934] ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.1 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1339-91 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAATMV010000007.1 Salmonella enterica subsp. enterica serovar Anatum strain 1000 NODE_7_length_92967_cov_67.3404, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1338 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 1277 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 1216 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 1155 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 1094 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 1033 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 972 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 911 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 850 29 100.0 32 ............................. CGCGAGCAATTCCATCTGACGTTCCGGAGACA 789 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 728 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 667 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 606 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 545 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 484 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 423 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 362 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 301 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 240 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 179 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 118 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //