Array 1 30511-30964 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANMY01000108.1 Leptospira sp. P2653 ctg7180000006757, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 30511 29 100.0 31 ............................. GAAATGAGCGTATGATTACTTCATTAACGGG 30571 29 100.0 32 ............................. CAATCAAACGTTCAAACAATACAAACTCATTT 30632 29 100.0 31 ............................. CTGTGTGATAATTGAATCAACTTCATTTAAT 30692 29 100.0 32 ............................. GTTTGCAAGAAAAAATATCGATATAAGCATTA 30753 29 100.0 32 ............................. TGGGTTAATTTTAATGTTCCTAACCTGATAAC 30814 29 96.6 32 ............................A GAAATCGGAATCGCATCGTCATGGATGAACGT 30875 29 100.0 32 ............................. AAGCTTGAGATAGGTGGGGAAATTCCCCACCT 30936 29 86.2 0 .......................A..ATT | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.9 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TGGGGTTGAACCCATAACCAATCCCACAAATACTTGGATCCGAAAATAAATCTGTCGGAATTACGACAAAATCCCCTGTGAAACGATCGGCCCCCACAACGCGCCCTTTAGAAAGCGTTGTGCCCGAGTTTCCCTTATTTTTGGGTGGGGGGTGGAAAGACTCGGGAAATTTTTCTCTATCAAAAAATCATACTTCTTGCAAGTAAAAAGTATCATTCTTGTCGGAACACTTGAAAAATATCAGTTTTTGATCCTTATTATCCCAAAAGCCTTCTTAATTTCTGGGGTTGGTTATGATAGCAAGCGTTGTGCCGAGTTTCATCTAGCTTCATGATCTTCAAACACAGAAGTTCCCGCACATAGAAGAACTCAATTACGAGTAAGTTCCCTTAGAAACATTACGTTCTTAATAAGAAGATTTGCCATCATAGATTGACTCGAACACAAAAATCAAAAATAGATTGCAAAAAATCCGAATTTATCCTATACAAGTTTTTAGC # Right flank : TTTCAGTTTAAACAAAATAGATGGGCAATAGAATTGGGAAACAGAATCCGATTGAAAACTTTCAATGTAAAACTCATTCTCAGGAATCAACACGAAGAATAATATTTCACCGCGATCATTGAATGATAAAATGCAATTTAAAACCAACCTACATTTGACTTCACTCTCTGTGCAATACCTTTAAACATTTTATGAGAATGAATTCTTCGGTTATCACATACTATGAGAATCGTAGAATCAATGAAAGATATTTCTTATACGAGAATTTACTAAAAAGGAAACTATAATCAGCAATATTTACAACATACGCTCGATAAAACGATTATAGTGTACCGCTTTTGTAAAGTTCAGTAATTACGGACAGTTGTAGGCAAAAATAACTTGCCAATTCGTTCCGTATGAGGAATTTCACGCATCATGTGTGATACGTTTGTCGCCACGCCGTCTTTTACCGGAACAGGTTCGATGATTTTTGGAAAAAATTCGAACAGGATGCTTGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3313-1578 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANMY01000020.1 Leptospira sp. P2653 ctg7180000006860, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3312 29 100.0 32 ............................. CATGAATTTGACTATATGAATTAGGCTAAAAT 3251 29 100.0 32 ............................. GCTTCGGCGAGATCGTTATAGAGTTTCGCCTT 3190 29 100.0 32 ............................. GATTTTAATCGGAATGAGACGGACGTATTCGC 3129 29 100.0 31 ............................. AATCAAAGATTCTTCCTACAACGCCCGTAGA 3069 29 100.0 32 ............................. TTTCATCCCGGAAATAGTATATGCAAGTTCGA 3008 29 100.0 32 ............................. TATGTTGGCAACGAATCGAAAAAACTTTTTAA 2947 29 100.0 32 ............................. GTTTGCGGATTTACCAACCATGTTGACCCAGC 2886 29 100.0 32 ............................. AAATGATCGCAAGCATCCAGAGCGTACTTCCC 2825 29 100.0 32 ............................. TCTAAATTTACGGAAACCCCTCTGGTTTCCTA 2764 29 100.0 32 ............................. AACAAGGGCGTTTAGACTTGCTAGCCGCTTCA 2703 29 100.0 32 ............................. GGATGTCAATCGTGTGTTCTTCGCAGGAAGCC 2642 29 100.0 32 ............................. TACGAAAGCCATCCTATTTCCGGGTAATCCAC 2581 29 100.0 31 ............................. TATTTGGTGGGGTTGGTTATGTTAGAGAGCA 2521 29 100.0 32 ............................. CCGAAAAACGCGCTCATATCTTGGAAGGATTA 2460 29 100.0 32 ............................. AGATTCGATACGACGGAAACTACACCTACTCC 2399 29 100.0 32 ............................. AGATTCGATACGACGGAAACTACACCTACTCC 2338 29 100.0 32 ............................. AATAGGATCTGAATGCGTTTTGTTTCGACTTT 2277 29 100.0 32 ............................. AATTCCCTTAAGGGTTTTCCCGTTCCCCATAC 2216 29 100.0 32 ............................. CTCGTCGAAAAGGGAGTTCTAATTCTTAATAA 2155 29 100.0 32 ............................. TGTTTGAAGTTCGTACTACTCTACATCAAGAA 2094 29 100.0 32 ............................. TTCGAGAGCTTGGTCTATTTTGCCATTTTTAT 2033 29 100.0 32 ............................. ATCGGATTGATGGATTCCGGAATGGGCGGTTT 1972 29 100.0 32 ............................. TAAAGCCCATCTACAAAAATGCAAAAACAGAA 1911 29 79.3 32 .....................TTGAAC.. TAAATTGGTCGTTTTTAATTTCGGGAAAAAGG 1850 29 79.3 32 .....................TTGAAC.. GGAATTTCAATAAGATACTGAAACTCTATGAA 1789 29 79.3 32 .....................TTGAAC.. AATGGATTGAACACATGATTCACTTCTTTAAC 1728 29 79.3 32 .....................TTGAAC.. TAGCGTCCTATATCGGGCGCTCTCTAATTTGG 1667 29 79.3 32 .....................TTGAAC.. TCGTTTTGATCGTTGATGAAGCGCAAGCCCTA 1606 29 69.0 0 ............T.T...A..TTGGA.G. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 95.4 32 CTTTTCCCCACACACGTGGGGACTTTTCG # Left flank : TGATATACAAGACTTTATAGAGACAGCCCATTAAATACAAACGTGATTTGCCATATTTCTCCGGAAGTGGCTTAATCATCAAAATAGAGTTGTTGAAAAATTCTATAGTTCCAATTGACAAAACCGCTTCAATCGGTCGTTTTTATAAAACAAAAACGGATGGAGTATTAATTTTTCAACAATTCTACTTATCTCCACATATTAGAGTGTCCAAAGTTCCGCGTCTAAAACGCGGGGTTTCTGCTCAAATGAACGGTACTTTATTTTATAGGGATCAGTAATATTTTTAGACAATCTGCTTAGAGGTTTTTCACACTTTCAATTGGTTTTAAAATAAGGCATCTTACTTTCACTCTTTTCAATTTCGTTTTTGGTTTATTGGGCTTGATTACGGTTACGTTTCACACGTTCTTAGTAAGAGGCGATTTGCCATCATAGATTGACTCGAACCCAAAAATAGATTGCAAAAAATCCGGATTTATCCTATACAAGCTTTTAGT # Right flank : AAAACAGAATGGATTTTGATTTAAAACCCTAACAACTAACATCTCGAAACGCATACGTGAGGTTAAAATTTTCAGTCAAAACAAATAAGGACGAAACAGATGAGTAATAAGAATTCGGAAACGGAATCCAATTTAGAATTTTCAATGTAAAAAAACTAAAAACCAGTTTCAAAACCTGAAAATGTAGGAACTCCCACCAATTTTAAACAAGAGGGAAAACCGCACAAAAGCGGTGTAAACTCCAAGGACGTAATCTATGGGAACTCCCACATTTTTTTAAAAACTTGCCGGACACGAAAGATATTCTTTGAAGGTTTCGAGATGAACTCTAAGACAAACACAATACGGAATCAATTCAAAAAAAACCTTTTCTCAAGTTAATCCCGTATTCCAAATACGCTTTGAGACAACAACTCATGTTCATCCAACCTTGACAGTTCATATAAGAACCGTCTAACGCAGCTTGAGATACCTTCCAACCGGATTCGGTAATTTTCACA # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGACTTTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 2914-2093 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANMY01000033.1 Leptospira sp. P2653 ctg7180000006847, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2913 29 100.0 32 ............................. ATTAGCTCAAAAAGCCGAGAAATCGGCGTTCG 2852 29 100.0 32 ............................. TTAGAAGGAAGAAGTTTTGTAAAGTCAATCAT 2791 29 100.0 32 ............................. TTCTTGTTGTGCTTCTGCTCCCGCCTTCGCAA 2730 29 100.0 32 ............................. TCAAAGATAAAAAATTACTCTATCAAGCCTCA 2669 29 100.0 32 ............................. ACAAAATTTCGTGTGGAAATTGATAGCTGGGA 2608 29 96.6 32 ............................A GGATCTGTTTGAAAATCCGATACACTCTCATA 2547 29 100.0 32 ............................. AATAGGATAATCTTCTTTGATATAGTCTCCAA 2486 29 100.0 31 ............................. TAGAGTGTGAACAGATTATTTCTGTTGTGGA 2426 29 100.0 32 ............................. ATCATAGACCTCGATGTGGGAGGAAAGGCCAC 2365 29 100.0 32 ............................. AAACGAAGAAAACCTAGAGAGGAAAGGGCTAA 2304 29 100.0 32 ............................. GAAACGATAAAACAAATAATCGAACACAGACG 2243 29 100.0 32 ............................. GAAACGATAAAACAAATAATCGAACACAGACG 2182 29 100.0 32 ............................. GAACGAAAGAATGAATAAAGACGAACTCAAAC 2121 29 93.1 0 ..........................T.A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.3 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : GTTCAAAAACAATGCATTCTGCTCTATGCGCAGCCCTCATTTCTACTCAATGAATCTGACTTAGAAATTGCGATCGCCCTCACAAGTTTAAAATTTATAGATCGAAGGATAAACCTATTCTAAATTTTTTTATAATATTCAATTCATATAATTCCGATATACATAATATTATGGTAAATAATTCTTCCCTTTCTAAACAAATTTGTTCCCACCTCCTTCAAAATGATCGGTTCTTTTTCTTTGGATCCGAAATTCGTTTTCACGACGATTTGTTTCACGAGATAATAGATTTTGAAGGTTTATCTTTTATACCCAAGCTAAGTCCGAATCGAAACCAGAAAGAACCTTAAATGATTCCGTTCTTTCAAGGTTTCTTGAAGGGGACGGTTTTTCTTTTACAAACCTAATCGATTTTGTGAACAAAAACACAAGACCGATCATACCTTTAAAAATAAACTCTAAGCTGACATAGTATGTAAAATACTATACGAACTTTTAGT # Right flank : AAAATGACGAGAATAAAAACCTACCTTCGTTAGATTGAGAATTTTTACAACGTAGAAATGATGAATGTGGCTTTAAGTTTTTGATATTTCTGTTTTGGAAAAATTTCACTTTCTCAAAGTTGAAAGATAAACTTAGAAATTACGATCGGAATATAAAGAATATATCTTAAAAGTCCTTTGTTAATCCCGAAACGAAACAACACTTTTCGGAAGTCAAAAAGTTTGAAAAAGGGAACTGGTGAATCAAAGATAATGATGATTTACTAATTTATGGCGCATCGGAAATGATGAAATCGATATGCGAAATCTTATTGTCGTTTTAATTTTTATCGCAATTACCTCTTCCGGTTTATTGGCGAAAACTTCCGATTTCAAAGGCGAATGTAAACCAAAAGAATGGATCTGTATTCTTACCCGCAACGAAAATAACAAAGTAGAATTTTACGTCCAAAACCAAACACCTTCGGGAGAATATCCTTTTACAATCTATTTCAATTTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 77731-76483 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANMY01000055.1 Leptospira sp. P2653 ctg7180000006877, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 77730 29 100.0 32 ............................. AAGGAAACGTCACTGGTTTGTTTGCAATCGTA 77669 29 100.0 32 ............................. AGACCAAGGGTCGCATGACTAAAAAACTTGAA 77608 29 100.0 33 ............................. GCAAATGCCGTATCCGAGATATCCGCCGAGGGT 77546 29 100.0 32 ............................. CAGGATCTTGTATTGTTCCCGTAACCGCTTGG 77485 29 100.0 31 ............................. TCCTGGGTCGCTGTTAAACATTCCGATTGCA 77425 29 100.0 32 ............................. TACGTGAAGCATGCAAAATTTATCAAAACGAT 77364 29 100.0 32 ............................. AACGCTAAAAACCTTAAACAACCTCTATCATC 77303 29 100.0 32 ............................. AACGCTAAAAACCTTAAACAACCTCTATCATC 77242 29 100.0 32 ............................. AGAAAAAAGAGAAGAAACTTCTTAACATGGCC 77181 29 96.6 32 ............................C TCGGCTGAATTGGCAAAAAGAATGGGGCATAT 77120 29 100.0 32 ............................. AGACTCTAAAGCTCTAAGTGCAGGAAGAGGCC 77059 29 100.0 32 ............................. AAAACCTCTCGCGTAGAACATGGCGGAGTCCA 76998 29 100.0 32 ............................. GCGGTACCGGAATCAGAGAATTAGGAAATTCC 76937 29 100.0 32 ............................. AAAGCATAGGTCGTATTAAATGACTGCACTTA 76876 29 100.0 32 ............................. TTTGCCTCTAAGCAAGAGATTGGAATCGCAGA 76815 29 100.0 31 ............................. CTATTGCTCAGATTAAAAAGCTTCCATTGAC 76755 29 100.0 32 ............................. AGATCAATACAGTGATCGATTCCAGCTAAAAC 76694 29 100.0 32 ............................. ACCAAGAAAAATTCGATGCTATTTGCGGATTT 76633 29 100.0 32 ............................. TTTCTTCAATTGAAAGAGAAATTCCTTTTTTA 76572 29 100.0 32 ............................. GAACAGGCAACTTCCGATAATCATCATTTGGT 76511 29 89.7 0 ..........................AGC | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.3 32 CTATTCCCCACATGCGTGGGGTTGAACCG # Left flank : GTAAATTACTTAAAAGGATTATTCCGGATATCAAGGAGCTGATTTATGGTGGTTTTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAGCCCGGGGTCTTTGTCGCCTCCATTAACGCGAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGGATGCGATCATGTTGTATTCGAGCAACACGGAACAAGGTTACGCTATCCGTTCTCACGGCGATCCTTCTCGCGAGATTATAGACTTCGACGGTTTGCTTCTAATGTCCAAACCCGATTCTAAACGCGATCAGAAAGTAGCCACGAGTATTTCCGACTTTTCGATGGCCACCGAAGATTCTCCTTTTTCAGATCTCAAAGTCTTTTTCAACGAAAAGGCTAATTCCCTTCTTTTAGAAACAGGTGATCCTAATGAATCGAAAGAACAGACATAATTCTTAAGATTCCTATACAAACTTTTAGC # Right flank : TGGACTTTCCAATCCGAGACCGGTGTTGTATTTTTATTTTCTATGGTGAATCTTTTTCACACGTTAAATTACGAACTTTAACGATTGTGCAAGTAACTTAACCTCGCAAAATCCACTAAAAGATAAGCTGGAAAAATCATAACGAAGCGTATCGCAGAAGAATAAACTCATAAGACATACAAGGAATCTGAATCCAATTCTAAAAATCATTTCCTTTCAAGCTTTTTTGAATCGTTTTAAACTTTGATATAAATCTTCTTTTTATCTAAAAAACTTAAAATTCCCCACCAAACCGATAAATGAAGAACCGCATATAACAAAGATGCGAGATACGGATCTGTAATAAAAACAAGTTTAGAAAAAAACCAGGCTTTGACGCCGACCTGTTTTCCATTCTCCGTCATAATTGTCCAAAGGTTAAGCGTTCTCGCAAGTATTCCGGAACCTACAAAAACTAAAATCGCGTTCTTACCGAATACGAGTAACGGTTGAAAAAAGAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //