Array 1 419768-417929 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOLU010000002.1 Enterococcus faecalis strain 20D1-63 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================================================== ================== 419767 37 97.3 31 ....................................A CTGCTCATTCGTTTTCTCCTCCTAACACGCT 419699 37 97.3 29 ....................................C AGCGCCGGAAAAGTAGCAAGCCCCACAGT 419633 37 97.3 29 ....................................A CGTGCCTTCAAATCCAAAAAAGGTTTGTT 419567 37 100.0 29 ..................................... GGCTTGTAATGCCTGAGTTACAGTCTTCT 419501 37 97.3 29 ....................................A AACACTTCTTCTGCTAAAACAACATTTTC 419435 37 97.3 29 ....................................A TCGTTAATTGATGATGTAGCCAACGCCAT 419369 37 97.3 29 ....................................A CCACTTGAACGGAATACTGGAACGTTTTC 419303 37 97.3 29 ....................................A GGGATTGTTGGGATTAGTGAAACATCTGT 419237 37 97.3 29 ....................................A GTGACAGATGGTAAATCGTTGTTACTTGT 419171 37 97.3 29 ....................................A CCAGAAATAAAAGTTGACGTAAGTATTGA 419105 37 100.0 29 ..................................... AAGGGCAAAACTGAAAACGATACAACGAT 419039 37 97.3 29 ....................................G CTAAAGGATTTTTGATGATGTTTTCTCGT 418973 37 97.3 29 ....................................G GTGTCTATGTTTCGGAAGCCCCTTTCTTG 418907 37 100.0 29 ..................................... GATGAAAACCGATGGTATTTACTTTCACA 418841 37 97.3 29 ....................................C ACTTGTCCAATATGAATGTGTTGTTCTAT 418775 37 100.0 29 ..................................... TAGTTATTGAACCTCAACGCACACCATTG 418709 37 97.3 29 ....................................A TTAAGTTCGACTGGAAGGCTCTTATAGGT 418643 37 100.0 29 ..................................... AATCATGAGTGGGGATCGCTGCTTTATGA 418577 37 100.0 29 ..................................... AATATAGGCGCCTAATCGTTTATAATGAG 418511 37 100.0 29 ..................................... GTTTTAAATTCATACATAACGAAACATGT 418445 37 100.0 29 ..................................... TAGAAAAGACGTGACAGAGCAAACAGCGC 418379 37 97.3 29 ....................................A GGTACAATTTATGGATTGTCACATGTCAT 418313 37 100.0 29 ..................................... GATGAAAACCGATGGTATTTACTTTCACA 418247 37 100.0 29 ..................................... TATGCAGAAAAATTAGAGCAGCTGAAAAA 418181 37 97.3 29 ..................................T.. CTAATGAGCATTCATTACATATGTAGAAC 418115 35 81.1 114 ......................TT.--.CG......G ATATGATTGATGTAAAAATATCATTGATATGTATAAATATGGTTATTATATAAAAAATATAAGTAACGAATTAAAGCTTTGCTAGAGCAAGTGATGCGATTACGAAATTATTTA T [418083] 417965 37 67.6 0 A...........C...A....TT.CTT...G..T.GA | ========== ====== ====== ====== ===================================== ================================================================================================================== ================== 27 37 96.6 32 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : CACAATTAAATGATAAACCAGAAGTCAAATCAATGATTGAGAAGTTAACTGGAACAATTAGTCAATTAATTGGCTATGAATTGTTGGAACATGAAATGGATTTGGAAGAAGATGGCATCACTGTGCAGGAACTTTTCAAAGCTCTTGGAATCAAAATCGAAACAACGAGTGATACGATTTTTGAAAAAGTTATGGAAATTACACAAGTACATCGTTATTTATCAAAGAAAAAATTATTGATTTTTATTAATGCGTGTACGTATTTGACAGAGGATGAAGTGCAACAAGTGGTAGAATATATCTCTTTAAATAATGTGGATGTCCTGTTTTTAGAACAAAGGGTGGTCCAGAACAGATTCCAATATATTTTGGACGAAAACTTTTATTTGAGTTATGAAAAAGCTTAAATTGTTATTGATTAGTGGTTCATTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAGTACGGAACTTTGGAGAAAAAATAATTCTCCGAG # Right flank : GAGTACGATTAGTTAAATATTTAGTTTTACAGCTATGTTGTTATTATATGTGTTGAACGAAGTTATTGATTTTAAAAGTAGTTGTTCCTCCTTTTTTTATATGCTACAATTTTTCTATATTAATCATTAGTTAAATATTTAAGGAGGTGATTATAATAAGAAGGAAAGGATTTAACAAAATAAAAAAAGAAATGGAATATGTTAAAGTAGTTACGAATTTACTAATGGTATCAAAATTTTTTACGCTACAGTCCGATGAAGATTTACATACATTAACTCTGTTTGGAACATTACTTATTTAATATTTATAGACGCTTTGTAATGAATGCGCTTTCTACGAAACTGGATAATAAAAATTGGCATTTTTCAAATGCTACTTTATGTAGTTTACTTTTTTATAGTGGCTATGTATGTTCGCATTTATTTCTTTTGAATAAAAATCACTTATCTATAAATCAAGAATTAATCCCCAATTTATTGAAAATGACACTCCCTGTTTT # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.25, 8:1, 9:0.52, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 928094-927463 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAOLU010000001.1 Enterococcus faecalis strain 20D1-63 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 928093 37 97.3 29 ....................................G GGATTTACAATAACTTCGCTACCATCTTC 928027 37 100.0 29 ..................................... TATGTGATTGAGGGAATTTTGATTGATGC 927961 37 97.3 29 ....................................A TAAGGCTAAAGAATCTATCAAGAAAGTAA 927895 37 97.3 29 ....................................C TTAAAGCGTTCCGAATAGCGTTCTAAGAA 927829 37 100.0 29 ..................................... AAGCATTTTTTTGATGTGTAATACTTATC 927763 37 100.0 29 ..................................... TCCAAAATTTAGAACAAGAAAAAAAGACC 927697 37 97.3 29 ....................................G CATTTTTGTAGTTCTTACTATTCTTGCTT 927631 37 100.0 29 ..................................... CGACCGTCCCATGTTGGAGCTCCAATCAA 927565 37 97.3 29 ....................................C TTATTTAAAAGACGGCAATATTAAAAACA 927499 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ============================= ================== 10 37 98.4 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Left flank : TGTATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTTGCAAGAAAATATCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTACAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAGAAAGTTTGGTATAATAAACGTGAAGAAAAAAATCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : AACTTTTTTGATTTGGCTTTTTCTCCCCTGTTTTATAGCCATGTTGTTAAAAAACAAACTATCACCTCAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGTTTCAATTTTCGAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGTAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAAT # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //