Array 1 127011-129020 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHDR01000015.1 Acinetobacter baumannii strain MRSN960 MRSN960_contig00015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 127011 30 96.7 30 .............................C ATCAAAGGCTTTGAGGGTAAGCGCCTTTGG 127071 30 96.7 30 .............................G TTGCGCTGTTTTTGAACGTGTAATTGGATA 127131 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 127191 30 96.7 30 ............................A. GGTAATACAATTCAATCTCACTACAAGAAT 127251 30 96.7 30 ............................A. ATATTTTACGTGTTGATTCAACTACGGGTG 127311 30 100.0 30 .............................. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 127371 30 100.0 30 .............................. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 127431 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 127491 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 127551 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 127611 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 127671 30 96.7 30 ............................A. GGGCCGCAACCATACGGTCTATGACTTCCA 127731 30 96.7 30 .............................C ATGATCATAGCCCTTATAGATATCGTATTT 127791 30 96.7 30 ............................C. GCGAAAGCGGGGTTTTTTATTGCCTGAAAT 127851 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 127911 30 96.7 30 ............................A. CTGCAAGACCACTGATAGTTGTTGAGAATC 127971 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 128031 30 93.3 30 ............................CC AAGCGTGACCAACTCACCAGTTGTCACAGG 128091 30 100.0 30 .............................. TTGAAACTTATAGGCTTGGCTTGGGTTATC 128151 30 96.7 30 .............................G AAAGGGATTTAAAAGCAGTTACATAAAATT 128211 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 128271 30 93.3 30 ............................AG CATCAAGTAGATCAGCAGTTACCTGTTCAG 128331 30 100.0 30 .............................. CTGTATTAGTGGCCTTCATGTGCATTAAAA 128391 30 96.7 30 ............................A. ACATGCCCACGTTGAAAATCGGGTACCAGT 128451 30 96.7 30 ............................G. ATTAAAACTGCTTATAAACTTTCTTAAATC 128511 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 128571 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 128631 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 128691 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 128751 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 128811 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 128871 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 128931 30 100.0 30 .............................. TTATTGCTGGGAATGAAACATCAAAGCAAA 128991 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ============================== ================== 34 30 96.8 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : | # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.35, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38-1269 **** Predicted by CRISPRDetect 2.4 *** >NZ_VHDR01000016.1 Acinetobacter baumannii strain MRSN960 MRSN960_contig00016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 38 30 96.7 30 .................T............ CTCATCGTGAAGGTTTTGCAAATATGCCTT 98 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 158 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 218 30 96.7 31 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTTGT 279 30 96.7 30 ............................A. AGCACGAGCAAGTTCTTGAGATGCCAAAAA 339 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA 399 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 459 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 519 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 579 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 639 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 699 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 760 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 820 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 880 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 940 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 1000 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 1060 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 1120 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 1180 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 1240 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 21 30 93.5 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : AGAAATTTTATTGCTGGGAATGAAACATCAAAGCAAAG # Right flank : TAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAA # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //