Array 1 8185-5504 **** Predicted by CRISPRDetect 2.4 *** >NZ_CWLK01000003.1 Listeria monocytogenes isolate LM5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 8184 36 100.0 30 .................................... GCTTGGAACGGAACTGTTTAAAGTCGGGTT 8118 36 100.0 30 .................................... AACGGCACCAGTGGCAGGACCGGCTGGGAA 8052 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 7986 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 7920 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 7854 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 7788 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 7722 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 7656 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 7590 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 7524 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 7458 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 7392 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 7325 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 7259 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 7193 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 7127 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 7061 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 6995 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 6929 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 6863 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 6797 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 6731 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 6665 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 6599 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 6533 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 6467 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 6401 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 6335 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 6269 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 6203 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 6137 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 6071 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 6005 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 5939 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 5873 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 5807 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 5740 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 5674 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 5608 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 5542 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5507,5510,5515] ========== ====== ====== ====== ==================================== =============================== ================== 41 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //