Array 1 29-1491 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWVB03000028.1 Acinetobacter baumannii strain UH106_429 contig28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 89 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 149 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 209 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 269 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 329 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 389 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 449 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 509 28 100.0 32 ............................ ATAATTCCGCCATCCTCGGCTGAGATATGGGT 569 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 629 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 689 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 749 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 809 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 869 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 929 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 989 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 1049 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 1109 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 1169 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 1229 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 1289 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 1344 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 1404 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 1465 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 97.7 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : ATTGCCTGACTGGTATGAAGAACCAGTAG # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4623-8732 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWVB03000185.1 Acinetobacter baumannii strain UH106_429 contig185, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4623 28 100.0 32 ............................ TTATTGTGAGCACCTTGATTGCTGTGCGCTGC 4683 28 100.0 32 ............................ TACAGCGGGAAACTTGAAAGTCATTGCGAAAT 4743 28 100.0 32 ............................ TGATTGCCCCCTGAGGAAACTGTATAAAGTCC 4803 28 100.0 32 ............................ AAACACCAACTAAGCCATTCCCTATTCAAAAA 4863 28 100.0 32 ............................ ATGAACTTTTAATGGATGCATGCGCCGCCCAC 4923 28 100.0 32 ............................ ACGAACAACGATAATTTGGAATACACGCTCAT 4983 28 100.0 32 ............................ TCAGGAGAAAGATCGTTCAAAAGCTCAAAACC 5043 28 100.0 32 ............................ TGAAAGTTTTGATATCCACTCTGCTGTTTCAA 5103 28 100.0 32 ............................ AGATGGTAAGAAAATTATTGAGTCTGGAGACA 5163 28 100.0 32 ............................ CGACAGTCCAGTTGATCAGATCTTGATTAGAC 5223 28 100.0 32 ............................ AATGACATGGTTCAACAATTAAATTCATCTCA 5283 28 100.0 32 ............................ GTTCTTTTCTGCAATATGTGCCATTAGGTATT 5343 28 100.0 32 ............................ ATTTTAGATGAAACAAAAGATAGCAGGATTAT 5403 28 100.0 32 ............................ AGACCAAGCGGATTGACCGTATTGATAAATAA 5463 28 100.0 32 ............................ TTCTGCAATACAAATCACTGGATCAGCCAGGT 5523 28 100.0 32 ............................ TGAGTCTTTGATTTCCCAAATATTACTTGAAA 5583 28 100.0 34 ............................ CCTGAAAAATTTCACTGTGTCCATTTCGTTATTA 5645 28 100.0 32 ............................ TATGTCTTTAAATTCTGAAAAAACACTTGTTC 5705 28 100.0 32 ............................ GAAAAAATTGAAAACTTTTTAGAAGTAAATGA 5765 28 100.0 32 ............................ GCCACACATGCCTAAAAACGCAAGTGCGCTCG 5825 28 100.0 32 ............................ ATTATCAGATAAGCCTTTTATGAATGATCGTT 5885 28 100.0 32 ............................ ATTAGCTATTAGCTTTTTGGCAACAACAACAG 5945 28 100.0 32 ............................ AGTTCATGAAAACAGCTTTAAAAAGAAAGCAC 6005 28 100.0 32 ............................ TCCGAAGGTAGTGAAGCTGTGTGTGAATTTAC 6065 28 100.0 32 ............................ TTGCAAGCTCGTCTAGCTAAAGTAGACCCTAA 6125 28 100.0 32 ............................ TGGTACGACAACTACGAAAAGCTGAGCAAAGT 6185 28 100.0 32 ............................ TCAACTTAAATGGATGCTCCCCGCGGTGAATT 6245 28 100.0 32 ............................ TTGATTGCTAGACGGATTTTTAGGCAGATCAT 6305 28 100.0 32 ............................ GAGTTTAATGCGCTATATGGCGACGAGGATTT 6365 28 100.0 32 ............................ CATGCAATCGCGTTGATTACCGCAGCTTCGAA 6425 28 100.0 32 ............................ ATGAGCCGCAACCATACGGTCTATGACTTCCA 6485 28 100.0 32 ............................ ATAGCGCCCTGCTCTATGTTGTCACTTCCGAA 6545 28 100.0 32 ............................ TCCAAGTGAATCGGCTCCTAATGCAAATGACC 6605 28 100.0 32 ............................ TGAAAACCAATATGCTGCCTAATTGCCATAAG 6665 28 96.4 32 ....A....................... GATCTGCGTCCATTTGTACTTGCTGCGGGTGC 6725 28 89.3 32 ....T.......AT.............. ATATACAGCACCGCTTAGTGCGACGCGGTCAT 6785 28 89.3 32 ....T.......AT.............. GCCCACAGGTTGAGCATCAACGGCCATCGAGA 6845 28 89.3 32 ....T.......AT.............. ATCATAGAGCTCACTTTGTCGTTGAGCCTGCA 6905 28 89.3 32 ....T.......AT.............. AGAAGGCCCGTAATTTAACTGTAAGCCGTGGT 6965 28 89.3 32 ....T.......AT.............. TCTTCCTGAGTTTTAATCCCATTTGCCTTACA 7025 28 85.7 32 ....T.T.....AT.............. CATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 7085 28 89.3 32 ....T.......AT.............. TTCAGGGAATTATCGTGAAACTTTCATTGACT 7145 28 89.3 32 ....T.......AT.............. TGCACCAGCTGCTGGCTGGTTGAAATCTGCAA 7205 28 89.3 32 ....T.......AT.............. AGAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 7265 28 89.3 32 ....T.......AT.............. TGTTTCAAAAGCTACACCATCAAAACCATTGC 7325 28 89.3 32 ....T.......AT.............. TATTTAAGTAATAAGTTTAATAACGACCTAGT 7385 28 89.3 32 ....T.......AT.............. AACACGTTCTCTATATCGCTGTTTGCGGTCAT 7445 28 89.3 32 ....T.......AT.............. TTCAGTTGGATATGCCTTTGATACCAAGAAAC 7505 28 89.3 32 ....T.......AT.............. GCCTGCAGACACGGATTTACGCAGCTGATCGA 7565 28 85.7 32 ....T.......AT...........C.. TAACCAAACTATGTCATCGATCGGAGATTTCA 7625 28 89.3 32 ....T.......AT.............. TTAAAATAAATGCCTGTGGTTTTTTCTTAACT 7685 28 89.3 32 ....T.......AT.............. AGTTTCCGAAGTTGAATTACACTCGCCAAGTT 7745 28 89.3 32 ....T.......AT.............. TAACACAGTGATTTGATTACCTTGAGCAACCC 7805 28 89.3 32 ....T.......AT.............. ATCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 7865 28 89.3 32 ....T.......AT.............. TCATCCACCTTTGATGAAACGGATCCACGCAA 7925 28 89.3 32 ....T.......AT.............. TCTTGTGTGACGGCCTCCACTCCAGATCCCGC 7985 28 89.3 32 ....T.......AT.............. TTAAGCTTCAAAAATAGCCATTGATTATAAAA 8045 28 89.3 32 ....T.......AT.............. TGACAACTTTCCACGGCAATCAGGGCTTTCCA 8105 28 89.3 32 ....T.......AT.............. TAAAGATGCACGTGGCCTAATGCAAGTTATTC 8165 28 89.3 32 ....T.......AT.............. TTTAAAATTAGGTGCTGAGTTACCACGGCTCA 8225 28 89.3 32 ....T.......AT.............. TAAACCAAGAACTTGAAGATTTTGATGCTTAT 8285 28 89.3 32 ....T.......AT.............. TAAAAATAGTGTGTTAATTATTTATGATGAAA 8345 28 89.3 32 ....T.......AT.............. CGTATACATGCACATCAATACGATATCCCGAT 8405 28 89.3 32 ....T.......AT.............. ATACTATTATAATGATCTAAACCCATTACAAC 8465 28 89.3 32 ....T.......AT.............. ATCATCAATAAGTTGGCCTTGATTTAAATAGT 8525 28 89.3 32 ....T.......AT.............. AGATACAAACGAGTTCGCATCTCGACCAGAAG 8585 28 89.3 32 ....T.......AT.............. ATTATCCAGATAAAACCATATCTACAAAGTGG 8645 28 89.3 32 ....T.......AT.............. TCAACCTGAACACAGACATACATGTTCTATTG 8705 28 78.6 0 ...GC.......AT..........AT.. | ========== ====== ====== ====== ============================ ================================== ================== 69 28 94.4 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : ATTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTA # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.71, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : GTTCTTCATCGCATAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //