Array 1 226737-228897 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWGW01000005.1 Klebsiella pneumoniae strain VRES0205, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 226737 29 100.0 32 ............................. GCCGACATGCTGGGCGCGATCACAACGGTTAA 226798 29 100.0 32 ............................. GGCGCGGTGTGGTATTGGGTGAAACTGGACGA 226859 29 100.0 32 ............................. GCACTTTACCTTCGAGGTCGTTCCCTTCGAGG 226920 29 100.0 32 ............................. ATGTATGGATCGAGCCAGGCGCAACCACGAAC 226981 29 100.0 32 ............................. CCAGGGCTTTCGGACCGTCAGGAGCAAATCAA 227042 29 100.0 32 ............................. TAAACGGCACAAGCGGCACCTGCGGCCAGGTG 227103 29 100.0 32 ............................. CGTGTCGGTCATGGCGATGCTGGGCGGCGATA 227164 29 100.0 32 ............................. CGCCTGGGGGGATCGCGGTGAGTGATTCATTT 227225 29 100.0 32 ............................. CGCCTCAACAAATGCGACTTCATAGCCTGCTG 227286 29 100.0 32 ............................. GCTCGGTGTGGCCTAAATCAATTCGCGGATCC 227347 29 96.6 32 ............................C CTTGCATACGTGTTACCCTCCATAACCTCACA 227408 29 100.0 32 ............................. CGTCGCCTGGCCGTCTGGTAAGTCCGGTTTTA 227469 29 100.0 32 ............................. CAGATATCGGCACCGCGAGGTTCTGAGTCGTA 227530 29 100.0 32 ............................. AGATCGAATAGTCGTAGTTTGTTTTACGGCAG 227591 29 100.0 32 ............................. CTGGAACGGACCCTGAGCGCCTTTGGGGGAAA 227652 29 100.0 32 ............................. ATTTCTCCGGTTGCCCTGGGTTCCCGGGGCAT 227713 29 100.0 32 ............................. GTGCTGGCCTTGAGCTTTTCAGCAATACGTCC 227774 29 100.0 32 ............................. TGCAGACGCGGCACTTTTACCCACGCTTGAGC 227835 29 100.0 32 ............................. ATATTCCGAGCGTTGCCAGCCTGCTGCGCAAT 227896 29 100.0 32 ............................. GCGGCGGCGTTAGAGCGCGCGCCAGCGTTTTC 227957 29 100.0 32 ............................. ACGGCATCTGCGAAATTCATGTTGCTAAATAC 228018 29 100.0 32 ............................. GCTGCGTATAAAGGCTGCAGACCGGAGAGAGG 228079 29 100.0 32 ............................. ACTGCGATTCGTTGACGATTATTCCTCCGCGA 228140 29 100.0 32 ............................. CGTTATTTTAAAAGCTGACGGCGAAGTGGTGG 228201 29 96.6 32 ............................A GCGCACCCGAACCATTACGGGGCTTGCCATTC 228262 29 100.0 32 ............................. GCCGAGTTCGTCAATGCTATGAATTTTATAAC 228323 29 100.0 32 ............................. CCGGACAACGCGGTCAGTACAGATTTCATTGG 228384 29 100.0 32 ............................. GGCAGCGAGGCGCAGATCCCGCAGCTTTACCA 228445 29 100.0 32 ............................. TTCGGCCAATAACCGACTATGTGAGGGACTTT 228506 29 100.0 32 ............................. CCCGATAAATTCACTCTGTGTCATACGGTGAT 228567 29 100.0 32 ............................. GCATCGACGCCCGTATCGTTATCGACAAAATA 228628 29 100.0 32 ............................. ACACGTCGTTAGGTGTTCCGTACTGGGAGAAA 228689 29 100.0 32 ............................. CCAGGCGACCGTATCTGGGTGCGTGAAACGTG 228750 29 100.0 32 ............................. CCGCAAGCCGTATCAACGAATTACTGCTCGAA 228811 29 100.0 29 ............................. GGGGTCACTTGGGTGAAACTGAACTAACT 228869 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAAATTGTTGTGATAAAGTTGGTGAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGTACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 125596-126286 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWGW01000011.1 Klebsiella pneumoniae strain VRES0205, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 125596 27 67.9 28 ...T........-A.A.......TGCTA TTGATGGCATATTCCTTCGCCCACAACA 125651 28 75.0 31 T..T.........A.A....A...T..C TCTCGTTGCTGTAGTGCCGTGTTTGCGTCTC G,G [125661,125663] 125712 27 89.3 31 T......-..................T. CAACAAGCTTCTTCAACCATCGCGTAAAATG 125770 28 100.0 31 ............................ AGTTAATAACACAGGATATAACTATGCAGCT CG [125780] 125831 28 100.0 31 ............................ TTGGTGGCAATCGTGATACAGTTCATTGCTA CG [125841] 125892 28 92.9 30 T.............A............. GTCACGCTGTAATTTCGCAGGACATCCATC CG [125901] 125952 28 92.9 31 .............A..C........... AACGGCGATGAAACGCCGGATTGCGGACAAG T,TG [125953,125964] 126014 28 85.7 31 ..A..........AA............A AGGTGGAAATAATCGAGAAACCAAACAGGAA 126073 28 92.9 31 ......................C....G CCATTATGCGTTATTCTCAGTCCGTTGTTCC CG [126084] 126134 28 96.4 36 ..............A............. GAGGCTTAGCTGGCGAGAGTGCGTTGGGCGTCTGGC 126198 28 96.4 31 ..............A............. CAGGCTGCCAGGCTCCTGAAGATTAACAAAG 126257 28 100.0 0 ............................ | CG [126267] ========== ====== ====== ====== ============================ ==================================== ================== 12 28 90.8 31 CCGATAACCCCCACGCAGGGGAAACACT # Left flank : TTAATTATTTCCAACAGACGAACTAATTCCAGAGTGAATTCGTTGTCATCGGAAGGAAACCAGAGCACCCCCGAGGCGCGACGTGCCGCCTTCTGAGAAAACTCATCTTTAATATGCAGGTCAAGCCACGTATCTACAGCCTTAATCATTGCCTCCCGCCCGTACAACTGAATGGGAACAATCTCATTAACAGGCTCATTCTCCGCGCCGCGCAAAACCGGGGGGATTACCGAGACACGAGCAAACAACGGCGAGCTTTCGCTGATCAACTTTTTCAGCGCAAGCAGTTCGTCGGTAAGTTGTTCAAATGTCTTTCTTAAATCCATAACGGATACCCCTGTTGGTTTATACAGTATGTATTTTAACCAACAAGGGTATTTGTAGCAATAAAACTGTTTTGCTAAATCCTATTCTGATTTTCTCGCTAAAAAATCCTATTCATTTTTACCATGCGTTTACCCCAAAAAAGGGGATGTATCAATACTTGCATTTCTTACGGC # Right flank : TCTAATCATATTGCATTGATATAAATAGGAAAAATAGTTCATATTTTTCCTACCGAGAAATTATGCATCACCGGGCTTTAAAATCAAATCCATCTGCCTTTGCAAAAGCAGCGACCATAGCGGACAGCTCTTCACCTTCGATTTTTACACCGCTAGGGCTAATACTGATCTCGCCGAGGGTGACTGGCGTGAGTTCACCCGGCTTCCATGTCGTGACGCTCCAGTTTGCTTCCACCAGCCCGCAGTTGTGATTCGCATGACTGCCGAGACGTGGTTCAGAAGCGAAACGAACAAGCGCAGAGATAAACAGGCCAGCTTCTTCGTCAGTGGCATTTTTAATGCTCATTCGGTGATTCAGTTCAGCCCCGGCAATGAATGCTTCATAGGGGTCAATAGGACGACGAATGGACTCACGGGCTTCGGATTTTTCATCCTTACGAGACTGAATTTTTTCATCCAGTTCGTTAACTTTTTTCTGCAAATCCGCCTTTGTGTCTTTA # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATAACCCCCACGCAGGGGAAACACT # Alternate repeat : CCGATAACCCCCACACAGGGGAAACACT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 163724-163451 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWGW01000011.1 Klebsiella pneumoniae strain VRES0205, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163723 29 100.0 32 ............................. AGTAGCGCGTCAGCATCTCCAGGTCGTCCTTA 163662 29 100.0 32 ............................. GAGTACACGGAGGTGAAGCAATGATTACCGGT 163601 29 96.6 31 ............................A ATAGAAAAACTGGCCGAATATGAGCAGCCAC 163541 29 100.0 32 ............................. GATTTTAGCGGATACACCAAAACTCGCCAAAA 163480 29 100.0 0 ............................. | T [163453] ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTTCCCCTGCGTGCGGGGGTTATCGG # Left flank : GGGGGGCGGCGATCAGGTTTTTACTCAAAATGGGTTTTACGGTCGGCCTTGTAGGGCATCCCGCTGTAGGTAAGTCATACCTGCTCGCCCGGACATTGCCAGAAGGTTTTATTGACGGTCGAGAACTGGTGGCGAAGAACAACTGGGAAACGCCGGTGCCATTCCCTTCCGACAAGATCCCGTCCGGGCCTGTAGGCATTGATGACGGAAATGTGTTCGGGAATGAAGCTTTGTTATCGGCAGCGGCGACCCTGAAAAAATGCGGCGTTGTGTTTACTGCTCAACGCCTGAAAAATGCAGAGAGCCTCGCGACAAGTTTAATGGCGCGGCGTGTGCTGATTTTTTATATCGGTGAGTATGAGTATTTTAAGTTTGAAGTTGCGGCACACTATGATCGGCGCAGGAAATCCTGAACCTGCGGAGGTGATTTTTACGCCTCAGAATCTGGTGGAAAATGAATGAATAGAATTTGCATTTGTAATCAATAGTATATAGTTAGA # Right flank : GCTATATCGAACGCGTAACTGGGAAGTGATATTCAGAAGAAAACATTCGCTCGCAAAATACCTATAGCTAAAACCGGTTCGCCGGTTTTTTTTTGTGCCTGCGGTATTCGGCATATCTTTTGCGGGAAGGATAATAGATTCCTGCGAAACTATTTGAATAAGGTGACAATAATGGCTCAGGTTCAGAGAGGTAAAACGGTTCCCGTTCGGCCATCAGCGACGTATTTCAGCTATAGCCCCGACGACGGGTATGAGGAGCATGACTCCCCGGAGAAGGCAAAAGCTGCGGCAGACGCTGCAATTCATGCTTATCGGGGTGAAGCATGTGATGGCTGGCCTGATGAAGTGACCGGCGTTACGTGGGGTGTGGTGGCACAACGAGCGGCAAAGTTTGGCGAGCGTAAGCGCACTAATGAAGACGCGCATCTTTCTCCAGAAATTCAAACGGTCTGTGACTACTATCTTGCGCCGGAAGTGACCGTACCAGCCTCACTCCCCTT # Questionable array : NO Score: 3.02 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTCCCCTGCGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //