Array 1 109966-108471 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAU010000004.1 Salmonella enterica subsp. enterica serovar Derby strain SH19MPS23 YZU2033_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 109965 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 109904 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 109842 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 109781 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 109720 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 109659 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 109598 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 109537 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 109476 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 109415 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 109354 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 109293 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 109232 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 109171 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 109110 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 109049 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 108988 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 108927 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 108866 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 108805 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 108744 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 108683 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 108622 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 108561 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 108500 29 93.1 0 A...........T................ | A [108473] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127366-126606 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAU010000004.1 Salmonella enterica subsp. enterica serovar Derby strain SH19MPS23 YZU2033_004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127365 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 127304 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 127243 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 127182 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 127121 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 127060 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 126999 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 126938 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 126877 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 126816 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 126755 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 126694 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 126633 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //