Array 1 237801-239536 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZFC01000004.1 Salmonella enterica subsp. enterica serovar Blockley strain 05-0359 NODE_4_length_419942_cov_2.09881, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 237801 29 100.0 32 ............................. GAGTTTCATAAATAATAAAGCCCCGTCTTTTA 237862 29 100.0 32 ............................. CTCGGGTTCGGTTTATACAAGGAAGATCAGAC 237923 29 100.0 32 ............................. TTACCTGCACTGCGCCAGCGATTTTCTATTAA 237984 29 100.0 32 ............................. ACTTATTCGACGGGAAAAGCATTGATGTTACT 238045 29 100.0 32 ............................. GAGCCAGCCCTGCCAGCTTTAACATGCGCTGA 238106 29 100.0 32 ............................. CTGCCCGTCTCGTTGTTAATCGGGTTACCGTA 238167 29 100.0 32 ............................. ATCTGGCTGTACTGGCTGGCGGTGATTTCCTC 238228 29 100.0 32 ............................. CCCGCCCAATATCATTCCCATTCGGGTACAAC 238289 29 96.6 32 ...............T............. ACATGCGCGAGGGTGAGCGCCTTTGCCGCACT 238350 29 100.0 32 ............................. GCACGGATATGGTTGACTGCATTTCGCTGAAC 238411 29 100.0 32 ............................. GATGCGATCAGGCTGGCGATCAAGCAGATGTC 238472 29 100.0 32 ............................. ACGTTCGGCCATTTTCCCGAACGCCGTAAAAC 238533 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 238594 29 100.0 32 ............................. TCGTATCCCTGCAGCTCCAGCGACCCTTCCCT 238655 29 100.0 32 ............................. GCAGGGTTTTACGGCTCCACGTGTTTTTTACG 238716 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 238777 29 96.6 32 ..G.......................... AATTGATCACAATCCTGTATAAGCTGCGCAAA 238838 29 96.6 32 ..G.......................... AGGCTTTGACAATGGCCTGGTTAAGTTGGAGT 238899 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 238960 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 239021 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 239082 29 93.1 32 ..G.....................C.... GATTGTTCAGATTGGGAATTTGACCAACGCCC 239143 29 93.1 32 ..G..........T............... CCTGAGGAGATATTCACCTTCCTGCATTTCAT 239204 29 89.7 32 ..G..........T..............A GTCAAATAAATATGAGTGAAGAAGCCAAAGCC 239265 29 96.6 32 ..G.......................... AAAAAAATGCGATCGGTACTCAACCCGGCCAC 239326 29 96.6 32 ..G.......................... CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 239387 29 96.6 32 ..G.......................... TGGGACATTCTCGCTAGTCACGGTCATGTCAT 239448 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 239509 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 97.2 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 255807-256691 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZFC01000004.1 Salmonella enterica subsp. enterica serovar Blockley strain 05-0359 NODE_4_length_419942_cov_2.09881, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 255807 29 79.3 32 ......................ACGTGT. GATCTTTTTCCTCCTCAAATCGTGGGGAATGG 255868 29 100.0 32 ............................. TGAATCGCGAGATGGGTTTTATGATGCGGATC 255929 29 100.0 32 ............................. GACTGGTATATCAACAATCATGAGCAATTCTG 255990 29 100.0 33 ............................. GAATCCCAATCTATTACCGGCACGTAGCCGGGG 256052 29 100.0 32 ............................. GCAATATCAACCGGGCGACCTGTCGCCTGCTC 256113 29 100.0 32 ............................. GCTCTTTCTCCGTTAGTGTGAATTTCGTCTTC 256174 29 100.0 32 ............................. TAACGCTTCAATGTCGCAAGCTTCAGTTCGTT 256235 29 100.0 32 ............................. GATTTACTAAGGTCAACGAGGGATTGAATTGG 256296 29 100.0 32 ............................. GCGAGGATCTTGTGTTGCAGGTTGGTCTCGCC 256357 29 100.0 32 ............................. CAGCGCCGTCCCGCTGCGCAGATGTTCGGTGA 256418 29 100.0 32 ............................. CAGGTCTATTGGACGATCGATAAAATCATTCA 256479 29 96.6 32 .............C............... ATAATAAGCTCAATAATGTAGATATTGAATCA 256540 29 96.6 32 .............C............... ACGACGGCACAAAAGAAATTTCCACCGTGGAT 256601 29 96.6 32 .............C............... TCGCACAACGCCTGGATATCCGCCCATCGGCC 256662 29 93.1 0 ............TC............... | A [256689] ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.5 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //