Array 1 204301-205368 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NLCH03000003.1 Salmonella enterica subsp. enterica serovar Muenchen strain CFSAN051042 CFSAN0510423, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
    204301	    29	 100.0	    32	.............................	TTGGCAGCGTTAACAATCCAACCCCTGAGAAC 	
    204362	    29	 100.0	    32	.............................	GCAACACAGGGTTTAACCGGTTCCCTGGCGCT 	
    204423	    29	 100.0	    32	.............................	GATGCTAACCACTATTTCATCCGCCTCGACGA 	
    204484	    29	 100.0	    32	.............................	CAGGCCGCGCAGTGGAAAATGAGCCCGTTTGC 	
    204545	    29	 100.0	    32	.............................	ATTGATCCAATTAACGTAGCTGCAATGTTTGT 	
    204606	    29	 100.0	    32	.............................	GCCGCGCATGACATCGAAAAAATGTGGGAAAA 	
    204667	    29	 100.0	    32	.............................	GCGTCCGTGTGATCACCGGGTGGGTGATGAAC 	
    204728	    29	 100.0	    32	.............................	TTCAGCGAGCCATAAAACCGCAGTTTGTTTGC 	
    204789	    29	 100.0	    32	.............................	TCACTTCAATAAGTCCTGGCGGTAGCTCGGGG 	
    204850	    29	 100.0	    32	.............................	CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 	
    204911	    29	 100.0	    33	.............................	GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC	
    204973	    29	 100.0	    32	.............................	ATTCTGGCTGTTATCGGCGGCACTCCTGATCA 	
    205034	    29	 100.0	    32	.............................	TGAGCACTGTTATTCGTTATAGCGGGTTTCGG 	
    205095	    29	 100.0	    32	.............................	TTACTGAAACGGATAAAAAATAATCAGGGGGG 	
    205156	    29	 100.0	    32	.............................	GGTGAGCTGGCGTCATTGCCCGCCCCGGCGAT 	
    205217	    29	 100.0	    32	.............................	CGCAACTATCCATGCAAATATTTCCATTGCTA 	
    205278	    29	 100.0	    32	.............................	GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC 	
    205339	    29	  96.6	     0	............T................	|                                	A [205366]
==========	======	======	======	=============================	=================================	==================
        18	    29	  99.8	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                 	       

# Left flank :   GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT
# Right flank :  GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [5,4] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-13.50,-12.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.92,0   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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