Array 1 53069-53708 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFVV01000030.1 Bifidobacterium breve CECT 7263 contig00042, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 53069 33 100.0 34 ................................. CGTCCATCGCACACACAATGCAACAACCTGCGCG 53136 33 100.0 33 ................................. ATGGCGCATGCCGAACGTATCGTAACCGATACC 53202 33 100.0 35 ................................. TCATACCGTAGGTTTTACCCAAACCACGAGCGCCG 53270 33 100.0 33 ................................. TCGGCATAATGCTGAGAGGGGCTTTTGAGTCTC 53336 33 100.0 35 ................................. CGGTAAACTATGAGTCTTATGCGTTGCGCAAGTCA 53404 33 100.0 35 ................................. ATAGGATGTAACGCACATGGATGGGGCACAGGATA 53472 33 100.0 35 ................................. ATATATATTCCGTTTTCGTTGTATCCGAATTGTAT 53540 33 100.0 35 ................................. CTCTACAGCGACACCCAATACGACGGCTACACACC 53608 33 100.0 35 ................................. TTCATATGACAGCTACAGTTATGCAGCCGCAAGCA 53676 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 10 33 100.0 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : TGTTTTCATAAATATATTGCTTTTTATGCATATATAAATTGTTGTAAGACAAATCCCAGTTTGACAATTTCATATCCATACACACAAAGCAGTTAGTCTTAGGATTGACTGCTTTTTAAAAAGACACCATTTAGGTGTAATGATGTCTTTTGGGTGTTATTTTATAGGTCATATCAAGGCTCATTCAATCGTGGTAAATTCGTGGTAAAATGAGTTTTTTCTATACTTCAAAATACTTGAAAGTATAGTGTTTATGCGGATAATCGAAAATTAGATATAAAATTTCTCCTAATTACTCGTCCTTTCGCACTGCAGAATGACGTGGAGATGAGGGTTATTTTCGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAATGCGCTGGTGTTTTTTGACTTTTGCGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCG # Right flank : CTTGAGGATGAATCCAGTCAGGCGATGCTGGACGGTCGCTCCCCATCCGGGGAGCGTGGATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9-514 **** Predicted by CRISPRDetect 2.4 *** >NZ_AFVV01000027.1 Bifidobacterium breve CECT 7263 contig00038, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 9 33 100.0 33 ................................. TATGTCCAGCTCATGCTCATGCTCAAATACGCC 75 33 100.0 34 ................................. AGACTGTTTATCGCGCGTCTCACGCGCTTGCGTT 142 33 100.0 33 ................................. TCTCGGACTCGCTGGCACGCGCTAACGCGGCCA 208 33 100.0 37 ................................. TGATACGGCGTATTGACAATATCATGCGAAAAATCAA 278 33 100.0 35 ................................. CCTGATTTTAACGCGCCGAACGGTATCCCCGTAGT 346 33 100.0 34 ................................. AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC 413 33 97.0 36 ....A............................ CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 482 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ===================================== ================== 8 33 97.7 35 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : TAGCCGTTG # Right flank : TGCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATACCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGTTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGCCGCCCAATTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCCGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGC # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //