Array 1 4101106-4098128 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025746.1 Clostridium sp. CT4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 4101105 30 100.0 36 .............................. AGTATTATATTAGATATTTCTTGTATGTATATGTTG 4101039 30 100.0 37 .............................. TAACAATTGTCATTTACAGTTATAATATAGTTTAAAT 4100972 30 100.0 35 .............................. ACTAATTGACGCCAATGTTCTAACCTACCAGTTTC 4100907 30 100.0 36 .............................. CTTGTATTTGCCTTATAAAATGGACGATAACTATAG 4100841 30 100.0 35 .............................. AAACTTTGTAAGTATTCGATAAGTTCGCCAACTGT 4100776 30 100.0 36 .............................. TAAGAAAACGCCTACTAATGGCATGGTTAAGCCATT 4100710 30 100.0 36 .............................. TACTCGTTGTGCTTTTCAAATATTGTATATGTACGA 4100644 30 100.0 36 .............................. AGTATTATATTAGATATTTCTTGTATGTATATGTTG 4100578 30 100.0 37 .............................. TAACAATTGTCATTTACAGTTATAATATAGTTTAAAT 4100511 30 100.0 35 .............................. ACTAATTGACGCCAATGTTCTAACCTACCAGTTTC 4100446 30 100.0 36 .............................. CTTGTATTTGCCTTATAAAATGGACGATAACTATAG 4100380 30 100.0 34 .............................. GTATAAACAGCTTCTTTATCTGCATAATCTGTAA 4100316 30 100.0 36 .............................. AAAATAATAAATATGAAATAATATTAAATAATGATT 4100250 30 100.0 36 .............................. CACACTTCAAATATACTCTTAATATGTCCAGCTCTA 4100184 30 100.0 35 .............................. ATAGTTTTTTAAAAAAGTTTCTTATATGTATTAAA 4100119 30 100.0 35 .............................. GATTAACTCTATTGGATGCAATAAAAGAATTTGGA 4100054 30 100.0 35 .............................. AGGTTATCAAGTAAGCTACTTTGTAATTAAAAATA 4099989 30 100.0 34 .............................. TAGGATATGCATGTTGCTCGCCAAAATCATTTGT 4099925 30 100.0 36 .............................. AGAAGCTAGATTATTTGTTAGAAGACATCAAGTTTT 4099859 30 100.0 36 .............................. CCGTTGGACTTAATGTTTTCTACTTTAGTTTGAAAA 4099793 30 100.0 36 .............................. ATGGTTCAAATAATTATTATTAATTAATAGTTTCTT 4099727 30 100.0 36 .............................. ACTAAAGGTACAGAAAACTTGATAGTAAATTTAATA 4099661 30 100.0 38 .............................. AGGTTATATCTATATCCTGTATTCCATTTCCTAGCTTA 4099593 30 100.0 35 .............................. TATTCCACCTCCTAACCATTCCAAGCCATTTCTTG 4099528 30 100.0 37 .............................. GAAATGCCAGGCAATAAGCCTTTCATAAAGCATGGTA 4099461 30 100.0 35 .............................. ATTTCTTTCATATCAATTTCCTTTCTGGCAATTCA 4099396 30 100.0 34 .............................. AAGAAATCTCGTGCTAAAAGGTTGAGAGATTGTG 4099332 30 100.0 36 .............................. CACTCTTCATTACGCCTATTTAATAGACCTTGCATT 4099266 30 100.0 36 .............................. GGAATATAATCTCTGTACCATTCTTCTGGATGATTA 4099200 30 100.0 34 .............................. AATAATTGATTTAGTTTAGGTCTATCTGCTTTAG 4099136 30 100.0 37 .............................. ATATACTCCTTTACTCCATAACTGCCTACATCGATAC 4099069 30 100.0 36 .............................. GCAATAGAAGGACCAGAAGCACCCCACGAAATACTA 4099003 30 100.0 36 .............................. GATTCATTTAAAATCCAATCGTTATAGCCATGATCG 4098937 30 100.0 35 .............................. GTAGATAACCAAGCAGCACTATTATTTTGCTTTAT 4098872 30 100.0 34 .............................. GATGTATTAGGTAAAATAAGAGATGGTGTTCTTT 4098808 30 100.0 35 .............................. ATAACTTTAAAAGTTTTATCAGCCAAAATTATTAC 4098743 30 100.0 36 .............................. TATCATTAGGCATACATTTATAACTCAAATGTCTTT 4098677 30 100.0 34 .............................. AACTAATGGAGTATTCTTCATTGAAGAAAATTTA 4098613 30 100.0 37 .............................. TCCCCCCTCATTATATTATACACTCCATTTATGAAAA 4098546 30 100.0 35 .............................. GAGCAAAATCGCAAATTGTAAACTGATTAGCTATG 4098481 30 96.7 33 .....................A........ TATTTGGAATCATTGGAGCGGATGGCAGTATAG 4098418 30 100.0 36 .............................. CCAGTCCACCAATCCTGTCCATCTGCTGCTATATCA 4098352 30 100.0 36 .............................. GCAATAGAAGGACCAGAAGCACCCCACGAAATACTA 4098286 30 100.0 34 .............................. CAGTATCAAAACCTTCTATTTGTTCATCACCATT 4098222 30 96.7 35 .......................C...... ATATTTACATTTAAAACTTCGGACATTAATTTAAG 4098157 30 76.7 0 ..C...A....G...AA.....T.....G. | ========== ====== ====== ====== ============================== ====================================== ================== 46 30 99.3 36 GATTAACCTTAACATGGGATGTATTTAAAT # Left flank : TCCCAACGGCGTTTCGATACGCTTTGTTGCCTTAAGTGGAAGACTCCTTTTTTCTTCTTTTAGGCTATTTAAATATCTATATAAAGGAGATATACTACCGTTATAACCTAATTGTTTAAGTTCTCTAAATATCCTAGTCCCTATAAAGTTATACTCTGGTTCCAAATACCACCTTTTAATATCTTCATGAAAATGATCAATTTTAGTTGAATATTTACGCTTTTTGTATTTAGGTTCTTCATCTAATTTTATTAACCTCTTAACAGTATTTCTTGAAACTTTTAACTCTTTAGCAATTTGTCGTATTGGAACGCCTCTCTCATACATCCTTTTTATTGTTATCCAATCTTTCACATCTTTCACCTTTGTTCCTCCTAATCTCTTCTAAAAGATTAGGATAATTTATTAACTTTGGTGGGTCAAGTTTACTTGCAAAATGTGGGTCAGTTTTAAGTATAAATCAATACTCGTTGTGCTTTTCAAATATTGTATATGTACGA # Right flank : AGAGAAGAGTATTTCTTAGAATACATATTTTTTATAAGCAATGATTTGAAACTAAATCAATATAATGTATTGAAAGTATTAAAATGGAAGCGTATTATAAGATTATATTTAGGAGGTGAAGATTATGGATATTTTGTTAGTATTTATATCAATTGTGGCATTATCGATAGTTGGAGGGAAAGCGTTTGCAGATATGCCTAATCCAGGAACAAGGTTTTATTCTGGTTTAAATAATTATGAAGCAAATAAGAAGAACAACAGATAGCTAATTTAGATTTATGTTCATTCAAGTTGATTATAAATAAAAAGAGCATGTATGGATTTGTTTTGACCAAATCTATACATACTCTTTTTACTTTTAAGTTTGACTATGTTTAATAATATTGTTTAAATTAAGTGGTCATGAAGGAGATGCTATATGAGCGAGCAATTAGAATTAAATGATTTTTTCAGATGGAATGGCCTTAAAAAATCGCTAATTGCTCTTCATTAGTGATTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACCTTAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 4104861-4103989 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025746.1 Clostridium sp. CT4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 4104860 30 100.0 36 .............................. TTGATGATTTGCAACTTACATTTGATACGGAAAAAT 4104794 30 100.0 35 .............................. GGTTTTATGGCTTATACGTGGTACTTCTCCTATAG 4104729 30 100.0 35 .............................. TAAAAGAATACGACACGAAAATCAAAACATAAGCG 4104664 30 100.0 34 .............................. CTCCTTGCCCTTTCAATATTCTCCTTATACTTTT 4104600 30 100.0 35 .............................. TAATTAACACCTTCTAAAAGCTCTGGATTTTCGTA 4104535 30 100.0 33 .............................. TTCCTAGCTTATTCTCTAAAATAAGATTGTCTA 4104472 30 100.0 36 .............................. CCCACAGCTAAAACTAAAAAAGAGACCAAGCATAAA 4104406 30 100.0 34 .............................. GCACACCAAAGAGAAATAGAAAAACAACTAAAGA 4104342 30 100.0 35 .............................. ACATAGTCTATTGATTTAATCGGTACTCCTAAATT 4104277 30 100.0 36 .............................. TATTTACTGCTAAGTATGCTTGGGTTCAAGGTGTTT 4104211 30 100.0 34 .............................. ATCAAACACTTATCACTAAAATACTTAATAGGAT 4104147 30 100.0 33 .............................. CAAGTAAGATAGCTATATGCTATCTTTTTTTTA 4104084 30 100.0 36 .............................. TAAGAAAACGCCTACTAATGGCATGGTTAAGCCATT 4104018 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 14 30 100.0 35 GATTAACCTTAACATGGGATGTATTTAAAT # Left flank : TTTGCTCCATTTAGTTTGAAGGAGGGGATGTAGTGAGTAAGATAAATAACTACAACTATGCCTTTGTATTTTACGATGTAAATGAAAAGAGGGTTCAGAGAGTTTTTAAGGTTTGTAAAAAGTATTTATCCCATTTCCAGAAATCTGTATTTCGTGGTGAAATGTCTCCCTCTAAACTTATAAGCTTTAAAAAAGACCTAAACAAAGTGATAGATAAAAACGAAGACTTTATTTGTATAATCAAAATGATGAACGACAATGTCTTTGGTGAAGAAGTTCTCGGAGTGTCATCAAATTCAACTGGAGAAGATTTAATAATATAATTTTACCAAGTGATTAAAATAGTAAGGTGCCGTATAATGCTGATTATTACAGGTGTTAGAAGTAATTATGCGAGTATATTTGTAAAATTAAAATTTACTTGGTAAAATAATATAAAAAGAAGCTATATAGGCGCTTTGTATAATATCCAAACTTTTAAGAATGGCTCAAAATCAATG # Right flank : TACTCGTTGTTGTAGATTGTCAAGTACTTTTGACCCACTTTCTCACACAAAATTGACCCACTACTATTAGCTTATTAATTCTATGTCGTACCCGCCTTCGCGTAGGCGAATAAGGTTTATTTCAATAGACTTGGTACTTGATTTGATTTTTATATATTTCGATAGCTCTATTAATCTATCTTGAAGAAGATCTAAATTCAATTCATCGAGTGGATCCTTGTAGTATATAGCCTTAGGGATAGATGCTACAATACTTGTAGCATTATCCTTAGGTTTATTTAATAAATCATCAATACTCATAAATTGAGATTCAGTAGCTTTTAACAATTCAAACTTTTTTGATTCTTTATTATACTGATAACCTGTATATCTCTTAACTAGTTTTATAAAATAATCATAATTAAATGGAATATGTTCTTTAACATAATCCCTAGCGCTTTTGCGGCCTTCAGTATTAAATATTTCTATAAACTTCATATAATCTAAATCTCTATGATCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACCTTAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 4116878-4116587 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025746.1 Clostridium sp. CT4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 4116877 30 86.7 36 T..A..T.A..................... AAAAATAAATACAATGGTATGTAAAAACTATATGAT A [4116868] 4116810 30 100.0 34 .............................. TCTTTAAACTTGTATCCTGGCCCCATTACAAAAA 4116746 30 100.0 35 .............................. AGAGTTAAGGGAAGAAATAAGAGGAACAGTAGAAA 4116681 30 93.3 35 ................A........C.... AAGAAAGTTTTTTTTATATCATAAACTCCACCTAT 4116616 30 73.3 0 ......T.A..GA.........G...GCT. | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 90.7 35 GATTAACCTTAACATGGGATGTATTTAAAT # Left flank : CTCCAACCCACATTAAATATTCAGCCCAATCAAATTGAGCTTGATCTCCCAACGGCGTTTCGATACGCTTTGTTGCCTTAAGTGGAAGACTCCTTTTTTCTTCTTTTAGGCTATTTAAATATCTATATAAAGGAGATATACTACCGTTATAACCTAATCGTTTAAGTTCTCTAAATATCCTAGTCCCTATAAAGTTATACTCTGGTTCCAAATACCACATTTTAATATCTTCATGAAAATAATCAATTTTAGTTGAATATTTACGCTTTTTGTATTTAGGTTCTTCATCTAATTTTATTAATCTTTTGACAGTATTTCTTGAAACTTTTAACTCTTTAGCAATTTGTCGTATTGGAACACCTCTCTCATACATCCTTTTTATCGTTATCCAATCTTTCACATCTTTCACCTTTGTTCCTCCTAATCTCTTCTAAAAGATTAGGATAATTTATTAACTTTGGTGGGTCAAGTTTACTTGAAAAATGTGGGTCAGTTTTAAG # Right flank : TGATAAGCTTGGAGATAGCAGTGCAAAAAGTAGATTTAAGGAGGTTTTTAGTGTGACAGAAATAGGAAAAATGATTAGGGATGAAGGATTGAAAGAGGGGCGACAGGAAGGCTTAAAAGAAGGAATGGAGATTGGAAAAGTTGAATTACTTATTAAACAATTAATTAAGAAGTTTAAAAAGATACCTTCTGAGTATGAAGAAAAGATTAAGAAACTTCCTGTAACAACAATTGATGTTATAGCTACTGATATATTTGTGTTAGAGTTTGTTAAGGACTTAGATGAATATTTTTAAAAATACATATTCCATTTTGTTAGGAGTCTAGAGTTTGAGTTTTTATTTAAATTCAGGCTCTTATTTTTTTACTATACAAGGAGTTACACATGAGGACTAAAGGAACTACAAAGTATGATGAAAATAGCTTTTATTTTCATAGAAAGTATAAAAGTTTTATTAGTTAAGCGAAGCAGTATTAAGGATTTATAACAGCTTATTAGAA # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACCTTAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 4 4125159-4121552 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025746.1 Clostridium sp. CT4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 4125158 30 100.0 35 .............................. TGAAAGAGTTTAAAGACAATGAAGTATTACTTAAT 4125093 30 100.0 35 .............................. CTAGATCTGAAGTAAATTCTATCGTCAACACAATA 4125028 30 100.0 34 .............................. AAAATTACAAGCTTGCAGGGTAGGACTTCAAAAA 4124964 30 100.0 34 .............................. CTTTTATTACTCCTTTTTTGAAATATAGTTCAAA 4124900 30 100.0 36 .............................. CTACGCTAATTTACTTACATCTTCAATTCCTAATAA 4124834 30 100.0 35 .............................. GCTATAGGGGAATTATCAACAATATGAAAAGGACT 4124769 30 100.0 36 .............................. GAAAAAGCATCTGCTACAGCAGTGGGAAAGGTTTTT 4124703 30 100.0 35 .............................. CTCTAGTGATATACTCTACCATAGAAAGAGTCTTA 4124638 30 100.0 36 .............................. CTTTATATGGTATTTAAAAACGGATATATTTAATGG 4124572 30 100.0 36 .............................. TTTTCAATCTGATACACAATAAAATTTCGTATCAAT 4124506 30 100.0 36 .............................. ACTTGAAACATTATATAGTTATTTTCAAACTGTCCG 4124440 30 100.0 34 .............................. GAAACAAGCTATTGCAATCACTGATCTAAAACCT 4124376 30 100.0 35 .............................. AAAGATAACTGAGATTATTAAAGGGTTTTCTTCTA 4124311 30 100.0 34 .............................. CTCCTTAAATTTATCCTCTTTTCCTGCTGCTTTA 4124247 30 100.0 35 .............................. ATTAACATATTAACCCTCCGTAGTATTAGAACTAG 4124182 30 100.0 36 .............................. AAGCAAGCAATACAATGGAAATATTCCAGTAGGACA 4124116 30 100.0 34 .............................. CCAGTATTAGAAAAGTTATTAAAAGCCTCTTTAA 4124052 30 100.0 35 .............................. AAACATAGGAAGTTATTTCACCATCTTCTTCGTAA 4123987 30 100.0 35 .............................. AACACAATCACATCTTGTCCCTTATAATTATCAAA 4123922 30 100.0 35 .............................. TGAAGAATTTAAAAATAATAAATATGAGATAATAT 4123857 30 100.0 36 .............................. GTCTTGGGAACCTGACGACGGTTTTTGGGGAACAAT 4123791 30 100.0 36 .............................. CTATTTAAAAATGATTTATGTATAGGTCTGTGTTGC 4123725 30 100.0 34 .............................. ATTTATAGTGTTTCTTTAGATGGTAAGACTATTT 4123661 30 100.0 34 .............................. TATTGGTGATAATATTTCTGATTTTAAGGATTCT 4123597 30 100.0 35 .............................. TAATCTTCTTGATCATACTGCCTAACACTTGTAAG 4123532 30 100.0 34 .............................. ATCTCGTTCAAAACAAAGTTTATTCTGCTTATGG 4123468 30 100.0 35 .............................. TTATAAACCCAAAAGTTATCTCATTTGTTCTTCTA 4123403 30 100.0 34 .............................. TAAGTGAACTTTTCTTTATCCCATTTTAATCTTT 4123339 30 100.0 35 .............................. ACACTATTACCCTTACTGCTTTCGGCCAATTTCTT 4123274 30 100.0 36 .............................. TGGATATAAGGCCAGCTAAATAATGTCAGAGTATGG 4123208 30 100.0 36 .............................. TAATCTTCTTGATCATACTGCCTAACACTTGTAAGC 4123142 30 100.0 36 .............................. ATTTATCACCTTCTTTCAAAAAGAAAAGAACCTAGA 4123076 30 100.0 36 .............................. AAACTTTTAAAATTAAAACTGTATTCGTGATCCAAC 4123010 30 100.0 35 .............................. GTTGTTAATCCATCTAAATTATTCTTTAGCACACT 4122945 30 100.0 34 .............................. GTTACTAGCACCCCCTTTTATAGCATCATATAAA 4122881 30 100.0 35 .............................. ACTCTACCAAACACCTGACTACTAGCCACAATCTG 4122816 30 100.0 34 .............................. ATGGTTTTGGCTTGTCGCTTTTTTGTAGCTTTAG 4122752 30 100.0 35 .............................. TTTAGAATCGGTTCAGAACCATTCATGTCCAATAT 4122687 30 100.0 35 .............................. AAATATAGTAAATGTTCATGATGATTATCTTGAGT 4122622 30 100.0 35 .............................. CATAGCAAAAGTGCTATGATAATTTTGACTATTTC 4122557 30 100.0 36 .............................. ACAGGATTATTTATTGTAACTTGCCATTTTCTAGAC 4122491 30 100.0 34 .............................. CGCTGTCATTTTAGCTTTATAATTAATTTTATAA 4122427 30 100.0 35 .............................. TATGTAACGAAGTGTACTTCTTTTTGATCTACACT 4122362 30 100.0 34 .............................. GCGTTAAACATATTATTTTTAAGTTCTAGCATGG 4122298 30 100.0 35 .............................. CCTTGGAGTAGAATGGTATGCAAAAGGTGGTATTA 4122233 30 100.0 35 .............................. CTAAAAGCCAATACTACATTATTAGGCTTGCAAAA 4122168 30 100.0 36 .............................. TATGGCTCTATATAAGGATATACTTCTATTCCTCTT 4122102 30 100.0 35 .............................. TCAAAATACAGAACTCTTGAAACACACTTCATTTT 4122037 30 100.0 35 .............................. AACCCTTAGAAGTGAATATAAGCAAGGTTTAATAG 4121972 30 100.0 34 .............................. TTACATTGGCTGGAGCTAATAAGAGAGCATACAA 4121908 30 100.0 36 .............................. AACCATTGGTATTACTGCCTTAGAAGCCATTTTCTT 4121842 30 100.0 36 .............................. TATTGACCGCTCCTTCTATAGAAAATACTTCCTTTT 4121776 30 100.0 34 .............................. TTTGTTACAAAGAAAAATCTATCCTTAAAGCCTT 4121712 30 100.0 35 .............................. TCTTGTTGTTGGTCTTTATGGTCAAGGTAAGACTA 4121647 30 100.0 34 .............................. AATGACCATCTAAGAGCATTAAAAAGACGTTTCT 4121583 29 90.0 0 ..................-.......C..G | G,AG [4121556,4121559] ========== ====== ====== ====== ============================== ==================================== ================== 56 30 99.8 35 GATTAACCTTAACATGGGATGTATTTAAAT # Left flank : ATGGACATCCCCCAAGATGCAGCTGTTATCAACATTGGTGTATTGTTAACTGAAAAGGGTAAGATTTGGTTTGATAATGCAGACTTTCAGGAAGTGGATAAAAGCATTCCAACAACTGAATATGTACCAGAAGAAATTTTTCCAGACAATATTGTAAATCCGTCTTTTGAGGAAGTTTAGCTAAGTAGCAATAATTATGTGTATTTGTTGAAGGCTGCATTTTAATATAATACTGAAATGTGGCCTTTTAGGTATGTATACAAAATTAACTAGGTTGAGTAAGCATTATTTTTTTATAAAAAAGCCTAAACCATTAGTGTATAATTTACCAAGTGATTTCAATAATAATATTACGTAATCCTTTGATTTTTTCAGTACTTAGATGTAATATTACGATATAGTTTGTAATATGGTAATTTACTTGGTAAAATAATTAAAAAAGAGCATATTTACTAGCCTTTTATAACGTAGTCATTAATAAGATTGGCTTTAAATCAATG # Right flank : TACTTTTGGGTTCTTTCCAAAGTTAGTTGAAAGTACGAAGTCTTTCGTAGGAAAGAACCTTTTTACGTAGGGTCTCAAAAGTACACCTTCCATACATTATTCTCTTTATTACCTTTATCTTATTTACACTGCCTTCTGCTAATCCATTACTATATTTATACATGATAGCATTTTTGACTGCAGCTATATCTTTAGTTAATCCTTTAATAAAACTGTTGATTTCAGATATATTTAACTTCTTAGCATCTTCAAGCCAAGTGTCTAAAGCGGTTGGTTTCTTGCTAAATAAAATCTTCTTGAATGAATCTACCAATAAATATATTTTAGACAAAATAGGATATTCTTTACATATTACTTCTAATTGTTCAATTGAAATAGCCTTGACTTTATCTAGTGGCTTATATAGTAATTTTATAAGATATTTACGATCAATCAATTCATACTTCAGATAATTACAATCTATAACTTGCTTTATTAGTCTTCTTTTTCTTGTAGAATAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACCTTAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //