Array 1 162504-161700 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNAV01000020.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STy014 SEQBC44__contig_20_45_69, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162503 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162442 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162381 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162320 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 162259 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 162197 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162094 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162033 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161972 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161911 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161850 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161789 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161728 29 75.9 0 A....................CCGCG..A | ========== ====== ====== ====== ============================= ========================================================================== ================== 13 29 97.9 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GCGGGGATAAACACGTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCA # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180678-178636 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNAV01000020.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STy014 SEQBC44__contig_20_45_69, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180677 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 180616 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 180555 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 180494 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 180433 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 180372 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 180311 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 180250 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 180189 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 180128 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 180067 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 180006 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 179945 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 179884 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 179823 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 179762 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179701 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 179640 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179579 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179518 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179457 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179396 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179335 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179274 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179213 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179151 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179090 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179029 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 178968 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 178907 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 178846 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 178785 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 178724 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 178663 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //