Array 1 1443767-1445908 **** Predicted by CRISPRDetect 2.4 *** >NC_019902.2 Thioalkalivibrio nitratireducens DSM 14787, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1443767 37 100.0 34 ..................................... CCCCCGGTAAGAAGGAGGAAGAGACTCCAATGAG 1443838 37 100.0 34 ..................................... CCAGCGCCCACGGCCGGCTTCTCCGTGGGTGATG 1443909 37 100.0 32 ..................................... TCCATCTTCTCCGCAATCTCCGCATACGCTTC 1443978 37 100.0 35 ..................................... CTCGCCCTTGTTCCAGTAGTTCGCGCCTGGGATCG 1444050 37 100.0 33 ..................................... TCGACCCCAACGTTCCTGTTTACACGGTGTCGG 1444120 37 100.0 32 ..................................... CCAGTCGGCAGGCTCATTGTAGAGCCGGCCAA 1444189 37 100.0 34 ..................................... CTCTTTTCGGCATCGGCATTTCAAAAGTCCTCCA 1444260 37 100.0 34 ..................................... TTCTTGGTAAACCCTGATCTTCTCTCCGAGTGCC 1444331 37 100.0 34 ..................................... CCGCCTCCCGTATTCGGCCAGACAAACGGCATCG 1444402 37 100.0 32 ..................................... CCGTATGACCAGCCGAGACATCTCTTGAAGCT 1444471 37 100.0 34 ..................................... GCCAGTTGGGATGTGTGTGATGCGGATTCGGAAC 1444542 37 100.0 32 ..................................... TCCTTCTGTTATTCGATAGAAGGCCCGTCTCG 1444611 37 100.0 32 ..................................... TGATCGTCAGGGTGACCTTCTGGCCCGCGGCC 1444680 37 100.0 33 ..................................... ATCTCGCGCAGCACGTCTTCGATGTTCATGGCT 1444750 37 100.0 33 ..................................... GTGTAGGTGCCGGTCTTTACGGCGATGTCGTAG 1444820 37 100.0 34 ..................................... CCTTGGCCGGGAACGCATAGATCTGCTTGGTGAT 1444891 37 100.0 34 ..................................... CCATGCTCATCGTGCATCTCGACTGCCTTAAACC 1444962 37 100.0 33 ..................................... GCCTGCCGCCACTTCGGACTGCAACCCCATGAA 1445032 37 100.0 32 ..................................... ATAACGCCGATGGTGGGTAGCCAGCTCACGAC 1445101 37 100.0 33 ..................................... GGCTCGTCGTTGGCATTGCGTAGCATGGCCGAC 1445171 37 100.0 34 ..................................... ATCCAGTTCGTCGAGGTATTTCGCATTCGCCGTC 1445242 37 100.0 33 ..................................... AGTGAGTTCGGTCGACAGTTTCTTCGGGTCCAG 1445312 37 100.0 33 ..................................... AATCCACGTCCGCTGGGGGCGGGCCCGCAGGGG 1445382 37 100.0 34 ..................................... CTCCGTCTCTGGTGCGGTTTAGGATTCGATCAGC 1445453 37 100.0 33 ..................................... TCGCGGTCGGATGGGTGCTGAGCGCCGGGCGGG 1445523 37 100.0 33 ..................................... CCTTACGGACCTGTTCCTGTTCCAGGGTTTCGA 1445593 37 100.0 34 ..................................... CCGCCTGGACGACGCTTCACGCATCGCCTGGATG 1445664 37 100.0 33 ..................................... AGAGCTCTTCAATGGTCTCTTCACGCAGGTTAA 1445734 37 100.0 32 ..................................... CACCGCCAGGTGGTGGTGCTCCATCGCCGGGT 1445803 37 97.3 32 ...............T..................... TGGTCTTCGCACAGCAAATAGCTTCGGTTGCA 1445872 37 97.3 0 ...............................G..... | ========== ====== ====== ====== ===================================== =================================== ================== 31 37 99.8 33 GTCAGAACGACTTCCCTGATGAAGAAGGGATTAAGAC # Left flank : GAGCGCGCGCAGCGGCTGGCCTCGATGAGCGCAGAGGAACGTCAGATCGACGCGCTGCTGAGCACCCTGGCGCAGGAACAGGCTGCCGGCACGCTCGCCCCGAGCAGCCAAGTCGCCAGTGCCCGGGTCGATCTACTCAGAACGGCGTTGGACTGGGGTTCCGAGGAACTGCGCCGGCAAGCAGCGGACGCAATACAGCAAACGGTACGCGCGCTGCCGTGGAGCAAGAAATCCCGGGCCGAACGCCAGAACGACCTCGCACGCCTGCGCCAGCCGAAGGATAGCTGACCAAGCTGGGCTCGGTAACCGTGACAGACACAGGAGAAGCTGTACCTCAGTGCGTGCCCCAGGCCGCGGATGCAGCCCCGCGCGCGGTAGGCTACCATCGTGCACGAGGCCCGGATTCAGACGCTCGCAAAGGCATCAGTCCCCGACACCCAGTGAAACCCGCGAACCCCCTTTGCAAGCCGTTGAATTCATATGTGTTTTCGAGGCATGCA # Right flank : CGGTACTCAGGAATTCTCTTGCCCTGCTTCCCGTGCCACTCGCCTGAGTGAATCGCGCCGAAGCGTGGCAAGCTTGCCAAGTGGGTCAGTATCGGACCCGTGTCGTTACATTCGTCGCCAACAGAACCAAGGGTTCCGCCCGCAACGGCAGAGCCTGGCTCACGCGAGGTAACGACAGATGTTGGATCCAGGGGAGAACCCTCAGAACGTTGATTGGACCGACCAGTTCGACGACCACGATTCCGAGTTCTGGGAAGAACACCTAGGTCTGCCCTTTACCCACAAGTTGCGCAGACCAATGGTTGCAGGGCAGTGTCATCCGATTTCATCTCGTAAAGCGTAGGCGAAGGACATGGTGGTGAGTTTGGCGTAGCCGTGCCACATCAGTTGGTGTCCGGGCGGTGGATCGTGATTGCGGTTGGTGTAGCCGCCCAGGATGGCGACTTCGCGAACCGCTTCCTGGAGACTGGTGGGGCGGGGTCGGCGCCGGGACTGGGCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAACGACTTCCCTGATGAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 1466440-1467534 **** Predicted by CRISPRDetect 2.4 *** >NC_019902.2 Thioalkalivibrio nitratireducens DSM 14787, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1466440 37 100.0 33 ..................................... GCCGCCGCCGCTCTTGATGCCGCGCATGTACTG 1466510 37 100.0 33 ..................................... TGGTTCAGTATGTCGAGGTATCGCATGTCGTTC 1466580 37 100.0 34 ..................................... CCCGGATCGTCCGGGCGAGCAGTAGCTGGGTGTG 1466651 37 100.0 33 ..................................... GAATCGGTGCTCCGCACTTTTCGCACTCGCCGC 1466721 37 100.0 32 ..................................... GTGTGGGTAGTTAGTCATGCTGCTTCTCCTTC 1466790 37 100.0 32 ..................................... GATCTCGGCGTCGATGGCTTCCTGGCGGGCCT 1466859 37 100.0 34 ..................................... GATCGTGACTCGCGTGATGACGCAGCCCTTCTTG 1466930 37 100.0 33 ..................................... GGTCAAGCCGCGTCGTGTTCAGCACGGTGTAGG 1467000 37 100.0 35 ..................................... GGGTGTCACCCACTGGCCCCGCCATTGAACAGACC 1467072 37 100.0 33 ..................................... CGTGAGTTGAAAACATGATGATCCTGGCGATCC 1467142 37 100.0 32 ..................................... GGCGATCGGCTTTCCGGACCGCCTCAGCCAGC 1467211 37 100.0 34 ..................................... AGCAGGAACGCCGCAAACTGCTCTTTACCGGCAT 1467282 37 100.0 35 ..................................... AGATCGATGAAGGTCGGCTTGGGTTCGCGTTCGAG 1467354 37 100.0 35 ..................................... TTTTTCTTTGAACTTGGCTTGTCTGGTAGCCCCGT 1467426 37 100.0 33 ..................................... GGCTGGCCGCGTCCATGGCATCCATGTCACGGC 1467496 36 86.5 0 ...........................C.-..C.CT. | GT,T [1467521,1467524] ========== ====== ====== ====== ===================================== =================================== ================== 16 37 99.2 33 GTCAGAACGACTTCCCTGATGAAGAAGGGATTAAGAC # Left flank : GCAGCATCTCGGCGACTTGAAGCGCCACCTGCGCACGGAGCTTGGATCGTGGCACTGAACGCACCGCGCGCGTGGCTGATCTGCTACGACATCGCCGACCCGCGGCGGCTGATCCGGCTGCATCGCTTCCTGAAGCGGTTTGCCCAGCCGGTGCAATACTCGGTGTTCTACTACGAGGGCAGCAGCGCCCAGCTCGCGCGCTGTTTGCACGACATCGCGGGTCGCATCGACCACCGCGAAGACGACGTGCGGGCCTATCCGATTCCGAACCCCGCCCAGGTCGACACGCTCGGCCGCGGCGCGCTTCCGGACGGCGCGTTGCTCCAGTCCCACGAAAACCCGGGCCTGGTAACCTTGCTGCAGGCGCTGGCCGAGTGAGCTAAGATTGCCCGGAACGTGCCCGAATCGCCGTCAAGAAATGCATCAGTCTGCCACCGCCCGCGAACCCCGCGAACCCCCTCTGCAAGCGGTTGTTCTAAAAGGTGTTTTCAGGCCATGCA # Right flank : CCCCCAGGCTTGAGTGCTGGTATTACAACCGCATGCGGCGAAAGGTCATGGTGCCGGGGCGGGTTCAGGCAGAACGGGGGCCGGCTCGCCTTTGCGCCGCTGCTGGACCACCTGAGCCAGGTAGGGCCAGGGCGAGACCCCGCGCTTGCGGCAGGTTTCGATCACGCTGACGAGGAGCGCGAAGGCCAAAGAACCCTGCTCGGTCCGGGTGCCCTGGCTGATGCGACGGCTGATCACCCAGTGCCGCAAGGCCTGTTCGGCCCAATTGTTCGTGATGGGCAACCGCGGAAACTCCAGAACGGCCCAGATCGCCTCCCAGTCATGGGTGAACTCGCGCGCCAGTTGCCGCGTCTTTTCGTGCGCACAGTCCCAGTGATCCACGCATAGGTCGTTGAAGGCGTCGAGCTTGCCGCGGTTTTTCTGGTACAGATCGGCCGGAGGCTGTGGTCCTTCCCGGGCCTGGTAGACTTGCTGGAGCAGGTCCTCGAACAGGGCCAGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAACGACTTCCCTGATGAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 1469965-1471051 **** Predicted by CRISPRDetect 2.4 *** >NC_019902.2 Thioalkalivibrio nitratireducens DSM 14787, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1469965 37 100.0 31 ..................................... TGCCCTGACGGACGCTGTTGAGGTTCTGCAG 1470033 37 100.0 33 ..................................... GCGTTCGGCATCCACGCCGTGACCAGGACATCG 1470103 37 100.0 34 ..................................... ATGGACTTGGTCTCTCCTGTACTGAGCGTGGTGT 1470174 37 100.0 33 ..................................... CGCCGGTCACCGCTTCGTCCACGCGGTCGGCCT 1470244 37 100.0 34 ..................................... CATCGGCCGGGAACACGGTGGCCCGCAAGGTTTG 1470315 37 100.0 33 ..................................... AGCTCACCGTGGCAAAGGCATCGAAATGCCGGA 1470385 37 100.0 33 ..................................... GGCCAGTCGGCACCGACTTCCTCGGCCAGGGCG 1470455 37 100.0 32 ..................................... GTAACTGCGGTCATACCCTGTACTTGCCGTGC 1470524 37 100.0 32 ..................................... CGGTCCATGAACTCGTCGTATCCAAGCGCTGA 1470593 37 100.0 33 ..................................... AAGCGGACGCCTCACACTGACCACGCCTACCCT 1470663 37 100.0 32 ..................................... CAAACAACCCTGGCGGGATTACATCAAGAAAA 1470732 37 100.0 32 ..................................... TGGGGAACTCATGCGGCTTATCGCCGCCTTGG 1470801 37 100.0 34 ..................................... AGGTCTGCGAAGGTGTTCGTGTACCTTGCGCATG 1470872 37 100.0 35 ..................................... GGTACTGAGCGCTCGGTGCTTGCTTCTTCTTCGTG 1470944 37 100.0 34 ..................................... TTCGCAATTTCTGAGGATCATTCGTGTTCTTCGT 1471015 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =================================== ================== 16 37 100.0 33 GTCAGAACGACTTCCCTGATGAAGAAGGGATTAAGAC # Left flank : GAGATGGTCGGCCTCCTGGTATTCAAATCGATAGCGCCGCCGCGAGGTGCGGGTGGCATGCAGATACGGCGGATCACTGTAGACCAATTCCCGGCCCTGGAAATCGAACCCGGCCAGAAACGCATGCGCGCAGGCGTTCACCTTCTCGATCGGATAGGGGCCCGCAAACTCCCGCAGTGCTTGCGGGTCCAGGTCGATGCCAATATTGCGCAACGCCGCCGGCTTGCGCTGCATGATCGCCCCACCACCGAGATGGGTTTCGATGTAGGTGTCGTGCGGCGGCATCAAGGCAATGATCGATTGGCACAACCCGACCGTCGCCTTCGAACCGAAATAGCCGCCCATCGCACGCCTCCCATCCCCGTGATCATGGAGACCACCATAGCCGCGACGCGCTATACCGTCAAGTCATCGCAGCTTTCTCCAGGGGGGGCTGAACGGATACGATGAAGAAGGGATTAAGACCTTCATCAGAATGGCGCCTCGTCGTCATCGGTGGG # Right flank : CTCTTGACCTTCGTCCGGAGTGTGTCGTTTTGACTTCAGCCAGAGGCGTAGGGCGGAAAAGGCCGAAGGCCGTCATCCGCCAGCCGGCGCTGGGGCGTCCCCGAGCTCTTGGGCGGCATGAACGCCGTGAGGCGGATGACGCTGCGCTATTCCGCCCTACGGCGCTTCGATCGGAAGCGGGGTTTGCGAACGTGATTAGGGATCCGGGGGGCGGGAAAGGTCGGCCAGCAACTCGTCCAGGAGCCGCTCCTCGTGGAGCGCGGTGCCGCGGGCGGCGAGCGCGGGGGCCAGGTCGGGATCCCACGGAGCGGCCGCGGTCGGCCCCTCCAGGGGCGGGCCGGAAACTTCCGCGTGGCGCTGCAGCGTCGCGGCATCCATGCGCCAGGGGTGTGCCTCGAAGCGCGCGAGCACACTGTTCATGATCGACAATCCCGCCCAGTCGAAATCGGCGCGGTACTGCAGGCGCGCGCCGGCGTCGCGCAATTGTTCCAGTAGCAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAACGACTTCCCTGATGAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 4 2523887-2520191 **** Predicted by CRISPRDetect 2.4 *** >NC_019902.2 Thioalkalivibrio nitratireducens DSM 14787, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2523886 28 100.0 32 ............................ TGGCTGCCGACCTTGGCGGCTTCCTCGATGAT 2523826 28 100.0 32 ............................ GTTTGCGGCGATGTCCTCGGCCAAGGCTTGCA 2523766 28 100.0 33 ............................ CGGCAGTTCTCCGCGCCGTTCTCGCTGTCTCGC 2523705 28 100.0 33 ............................ TGATTGGGCCGCTCGTCGCGCTCGATTTTTTCC 2523644 28 100.0 33 ............................ CTCGAGCTCCGCCTGCAGCTCCCGGGCGCGTCG 2523583 28 100.0 32 ............................ TGAGCCAGAGCATGCAGCGCCTCGTGGCCCTG 2523523 28 100.0 32 ............................ ACTTCTTCCATGTGTCGGTGGGGCGGCTGCAC 2523463 28 100.0 32 ............................ ACGAACTCGACCAGGCTATCCAGCCCACCGCT 2523403 28 100.0 32 ............................ ACCGCCTTGAACAGCTTGTCCTTGCCCTTCTG 2523343 28 100.0 32 ............................ CGCTCCCGGCACCATCAGCGCGCCCCACAATT 2523283 28 100.0 32 ............................ TCGTCCGGGTCCACCACGCCGGAGAACCCAAA 2523223 28 100.0 32 ............................ TTGGTATTCGAATTCTCCCTCCGGGTCTGGAA 2523163 28 100.0 33 ............................ ACGTCGCCGCTGGCGTAACTGCACTTGATATGC 2523102 28 100.0 32 ............................ TTACAGTCGGCGCTTTAACTCAAGCGTTCGGC 2523042 28 100.0 32 ............................ TTTGTTCATCGCGGCGGCCATTGAGCGGTCAG 2522982 28 100.0 33 ............................ CTGTTGCGTAGGTGTCTCCGGCATCAGATTTTT 2522921 28 100.0 32 ............................ TTGTCAATCATGAAGGCGAAACCGCCCACAGT 2522861 28 100.0 33 ............................ ATCCCATGCGCCAAGCCGCCGAGCGTGTCGTCT 2522800 28 100.0 32 ............................ TCTTCGCCGTCGTCGTCTACACCGGTGGCCGT 2522740 28 100.0 32 ............................ AAAGACGATGTTGTCAGTGGAGGTCATTTCTT 2522680 28 100.0 32 ............................ TTATGGCCTCCTGACCGGCGGCGCGATCACGC 2522620 28 100.0 32 ............................ GCCCGACTGGAAGGCTGCCGCGTCGGTCTGCG 2522560 28 100.0 32 ............................ AACACCGACGCCGAAGCGTATGCGGAGATTGC 2522500 28 100.0 32 ............................ TCTCGGTCAGATCAGGGGATGGCGGGGGCTCG 2522440 28 100.0 32 ............................ TGCTGGAGAAGTGGCAACGGACGTGTGCCTAC 2522380 28 100.0 32 ............................ GGTAACGCCGACTCCAGGTACGGCAATCCAGG 2522320 28 100.0 32 ............................ TATGGGATGCCGCGGTGGCTGTCGATGTACGC 2522260 28 100.0 32 ............................ CTCGAGCGCATGACGCCGAGCCAGATCCAGGC 2522200 28 100.0 32 ............................ TGATCAAACGTCAGAGCCAGTGCGTCGCCGCT 2522140 28 100.0 32 ............................ TGTAGGTGATCCTTGGCGGCCTGCTGCTCCTC 2522080 28 100.0 32 ............................ CCTGAAACACGGCCGCGGCGTGCCGGCCCCGG 2522020 28 100.0 32 ............................ ACGTAGGGAGTGCCCTTGGTGACCGCGATCAG 2521960 28 100.0 33 ............................ CGCTGGGCTGCGTGTCCAAGCGCGGCGTGGTGG 2521899 28 100.0 32 ............................ TGTGGCGTTCGAAGGCGCTTCTGGAGCCGACC 2521839 28 100.0 32 ............................ ACGTCCGCATCGAGATCGATCCGCAGCTTCAC 2521779 28 100.0 32 ............................ ACGGGGGTCAAATTGATCGAGCAGGTGCTCGC 2521719 28 100.0 32 ............................ AGCGAGACGAACGCCGCGGGGTCCGCCTCGTC 2521659 28 100.0 32 ............................ AGGTTCCTCTGCATCTCCCGGGCGGGGTAACG 2521599 28 100.0 32 ............................ CTCGAGCACGACGTACCGCCAGCAGACGCTGA 2521539 28 100.0 32 ............................ ATCTGCAGGAGCATTTCCCGCGTGATCTCGAA 2521479 28 100.0 32 ............................ TCGAGGCTCGCCGCGGTCATGTCGCCGCCGTC 2521419 28 100.0 32 ............................ ACCAGGTCAGGTTCCGACGTAGCCGCACGATC 2521359 28 100.0 32 ............................ AGCGGCTGAGGTGGCTGTGGGTGTAGTGCCGC 2521299 28 100.0 32 ............................ TGCGTGTCGGAACGGAGCTCCATCAGCAGGCC 2521239 28 100.0 32 ............................ AGACGTCGCGGGAGGCATCGAGGTAGGGCCGG 2521179 28 100.0 32 ............................ TTGATCTCGGCGGGATCCAGGCCGGCGACTTT 2521119 28 100.0 32 ............................ GCAACTACAAGACGATCAACGAGATGGAAATC 2521059 28 100.0 32 ............................ TGAACGTCGTGCAGACGCTAACCGACCCCACC 2520999 28 100.0 32 ............................ TCTTGCAGCTTCTTCGCGCCGTTGTCCTGGCC 2520939 28 100.0 32 ............................ TCCTGTTTGGGGACCGCCGCGCCCGCGTGTCC 2520879 28 100.0 32 ............................ TGTGGCGCATGGACCGTATCTATTCCCGTCAA 2520819 28 100.0 32 ............................ GTCATCCCCCCGATCACGAAACGAATGCTGTT 2520759 28 100.0 33 ............................ ACACCAGCACAAGACATTGCCAATATCGACACC 2520698 28 100.0 32 ............................ TCTACGGCGGGGCCAAGCTGGTCGTGACCCAG 2520638 28 100.0 32 ............................ ATGCGCCGCGAGCTATCCAATCTCGGGATCAC 2520578 28 100.0 32 ............................ ATGTAGCGGGTGGAGAAGCCCTTCTGATTGAG 2520518 28 100.0 32 ............................ GCATTGTAAAGGCCTACGAATGAATATCCCCC 2520458 28 100.0 32 ............................ ATCGTCGCCGAAGCGCTTGGTCGGGCCATAAC 2520398 28 100.0 32 ............................ TTTGCACCAGCTCGCGGAGCCGGTCTTTGTTC 2520338 28 100.0 32 ............................ TATGAGTGACCTGTTCGGAAACAGCGAAATCC 2520278 28 100.0 32 ............................ CATAACCGTAATAGAACCATCACCTATCCCTG 2520218 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 62 28 100.0 32 GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Left flank : GCATCGAAACACTGATGCAGGAGGAATGGCTGGGCGGTATGCGGGGCCAACTGGAAATCGCCCCTCTTCGCGCGGTCCCGGCCGAAGTCTTACACAGAGGCGTCCGCCGCCGACAATACAAGACCAACGTCGAACGGCTTCGACGACGGCGCATGCGCCGACACGGAGAAACCCACGAAGAGGCGCGTGAGCGTATCCCGGACACCGTTGCTCGCAAGGTGAAGACCCCGTTCCTCACCGTGTACAGCACCAGCTCCGGCCAGCGTTTCAGCCTTTTCATCGAACACGAACCAGTACAGACTCGCTGCGTGGTGGGCGCGTTCAACAGCTACGGGATCAGCCGGGAAGCCACCATTCCGTGGTTTTGACCCTTTTTTCCAAGTGGCTCAGCGGACGCTTGAAAAATCAACACGTTATAATCCTATGGGCCTACTTGGGTGAAACGTGCAGTGAGCCGATTTATTCTTTAACAATCAGGAATATAGAGAAGTAGAGCGCTA # Right flank : TCTTTCGCTCGCGCATTCGCTATCCGGACAGCGTTGTATCCGTTCAGCCCCCCCTGGAGAAAGCTGCGATGACTTGACGGTATAGCGCGTCGCGGCTATGGTGGTCTCCATGATCACGGGGATGGGAGGCGTGCGATGGGCGGCTATTTCGGTTCGAAGGCGACGGTCGGGTTGTGCCAATCGATCATTGCCTTGATGCCGCCGCACGACACCTACATCGAAACCCATCTCGGTGGTGGGGCGATCATGCAGCGCAAGCCGGCGGCGTTGCGCAATATTGGCATCGACCTGGACCCGCAAGCACTGCGGGAGTTTGCGGGCCCCTATCCGATCGAGAAGGTGAACGCCTGCGCGCATGCGTTTCTGGCCGGGTTCGATTTCCAGGGCCGGGAATTGGTCTACAGTGATCCGCCGTATCTGCATGCCACCCGCACCTCGCGGCGGCGCTATCGATTTGAATACCAGGAGGCCGACCATCTCGAGCTGCTTGCGCTGCTCCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 5 2927423-2926723 **** Predicted by CRISPRDetect 2.4 *** >NC_019902.2 Thioalkalivibrio nitratireducens DSM 14787, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2927422 29 100.0 32 ............................. GCCTGGGCGGCGCCGCCGGTCTTGGCGGTGCG 2927361 29 100.0 32 ............................. AATATCGGGAGGCGCAGACGTGATTGTGGCAA 2927300 29 100.0 32 ............................. TCGTGCAGCGTGCGACCGCAACGGTGGAGGTC 2927239 29 100.0 32 ............................. GCAGACCAACCGGAACAGCCCCGCCATCAGCC 2927178 29 96.6 32 ......T...................... AAAAATGCAACCACGGAGTGGTGATTGCAGGC 2927117 29 100.0 32 ............................. CATTAACATCGAAGGGGTGCTGGACGTTAACG 2927056 29 100.0 32 ............................. TGACGCAGTCTTCGGGCTATCTCGAACCGCGG 2926995 29 100.0 32 ............................. TCCGGACGGGTCAGGCGCATGGGTAGAGCGCC 2926934 29 100.0 32 ............................. CCAACCAGCGTCCCCGCCGTTAACCCGGCAAA 2926873 29 100.0 32 ............................. TCCTCATACTCGACGGCCACAGCGCACGGTCC 2926812 29 93.1 32 .....G...A................... AACGTCTACGGCGTGCTGGACATGATGCGCCG 2926751 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 GCGTTCCCCGCCCGCGCGGGGATGAACCG # Left flank : TGGAACAGGCTGTAGCGGGCCTGCCGGCTCATGGGCAGGAAGCCGAGTTCGTCGAGTAATGTTTAGCTCCACATTACTCGACGACTGGGGCCTCGCGCCAATGACCGCGCCCCAGCGCCGCGATCTGCTCGAGCTGCTGGACGACCGCCACCCCTGCCGCTCCACCCTGGTCACCAGCCAACTGCCGGTCGAACACTGGCATGACGCCATCGGCGATCCCACGCTCGCCGACGCCATCCTGGACCGCCTGGTCCACAACGCCTACCGCATCACTCTGAAAGGAGAATCCATGCGCAAACGCCGCGCCGCACCGACCGCTTGACCCCGAGCACCCGGTTCCCGTAACAATGCCTAACCCGCGTCGCTTCGCTCCGATGCAAGGGTGGCCGGCATCCCCGGAACGGGTGGCCGGCTTCGCGTGGAATCCCCGGCCCGCTTCACGCGGAATGGGTGGCCAGCTTCCGCGGAATACGCACCATACGGCGTGCCTCGCGGGCCGA # Right flank : CAGCAATAGGTGCCGGGCGGTTAGCAGCTGTAGCCCCGGGACCAAGATCAGCGGCGGCAAGGTTCTCTCTGCTGGAACTAAGCGTTCCACCAACCGGGCCCGTCAGGCACTGAAGATGGCCGCCATGGCACTTGCACGTAGCGACTCGGCGCTGGGTGCGTTCTACCGACGGTTGTGTTCCCGGATGGATACGCCTCGGGCCAACACCGCAGTCGCCCACAAGCTGGCTCGGATGGTGTATTTCATGCTCACGGCGGGGTGAGGACTACGTCGATCGCGGCCGCGAACACTACGGGGAACAGCAGCGCCAGCGCACTGTCGCCACACTCAAGCGTCGCGCCAAAGCGTTCGGGTTCGAACTGACCCAAGCCCCGGTAACCACATGATTTTACGTATGGGGGGCGGTTTGTTTCTCAAGAGGATCTATTTTTATATCCATCTGTAAATCAACGCGTCCACCAAGTTCACGGAAACGTAGCGAGACTGTGCCGGGGAGCGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCCCGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCCCGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 2928604-2928215 **** Predicted by CRISPRDetect 2.4 *** >NC_019902.2 Thioalkalivibrio nitratireducens DSM 14787, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2928603 28 100.0 32 ............................ TCATCCAAAATCGCGACCACCGGACTGCCGCC 2928543 28 100.0 32 ............................ TAGGCGTGACAACGATCGAGCAGCTTCCCGCA 2928483 28 100.0 32 ............................ TCGGAGATCAGGCCGGCGTCATAGGCGGCCGA 2928423 28 100.0 32 ............................ TGCCCCGACGCAGACGCTCACAAACGGACCGG 2928363 28 100.0 33 ............................ CGCAGATGCTGACGGATACCGAGACGGAGTTGT 2928302 28 100.0 32 ............................ TCGTAGCAGCCGGGGTCGTCGGCTTGGGCCAG 2928242 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 32 GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Left flank : GATGAACCAGATAATCCCAGAGGTAGCGCTCAGGTCCCTCAGCCGTGCGGATCTCGAGCACCCCATAGGCATCCACCCGCCCGGCCAGCGGCCGCTCCTCGAACAGCGGCCGTTGCCGATAATCCGGGACCGCGTGATTGTTCTTCTCTTGCAGCCGCGGCGGCAACTGGATGTGCCCGGCCTCTTCCAGGCGCAGCAGCAGATCCCGCGCGGCGTATTCCTTGAGCGCCCCGTTCGCCTGCCGCCAGTCCCACCCCTCACACAGTCGTCGGGCGATCGCGCTGCGACCGCGGGCCGCTCCCTGTGCCGTGGCCGCCTGCGCGATCTGCGCGCGAATCGTCGCGAGATCCTCGGCACGCACATCGCGGCCTCGGTAACGCAGCAGCACCCTGTCGCTCTGTCCCATGGGCACCACACGCTACCAGCAGATGCGCCGTGACGCCAGCCCCCTGTGCCACTTTTTTCAGGCAGCTAAAGTGATACCTGATATGAGGCTCCAT # Right flank : ATCCAGATCATCACCGCCGGCGAATATCTGAGGTTCGCTGCCGCGTGTCAATGGCCATTTATTCTGACCCGGTACTGGCCAATAAAATTGACCCACCCCTGATAGTCAGCTGAGTGTTTTCTGCTTCAGCCGATAGCTTTCTCCTCCCAGCATGAAGATGTGGGAGTGATGGATGATGCGGTCGATGATGGGGACCGCGACGTTGTCGTCATGGAAGAACTCGCCCCAGGCGGTGAAGTCCTTGTTGGTGGTCAGGATCACCGAGCGGTACTCGTAGAGGCTGTTGATCAGCTGGAACAGGCTGTAGCGGGCCTGCCGGCTCATGGGCAGGAAGCCGAGTTCGTCGAGTAATGTTTAGCTCCACATTACTCGACGACTGGGGCCTCGCGCCAATGACCGCGCCCCAGCGCCGCGATCTGCTCGAGCTGCTGGACGACCGCCACCCCTGCCGCTCCACCCTGGTCACCAGCCAACTGCCGGTCGAACACTGGCATGACGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 7 2932045-2931055 **** Predicted by CRISPRDetect 2.4 *** >NC_019902.2 Thioalkalivibrio nitratireducens DSM 14787, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2932044 28 100.0 32 ............................ TCGATCCCTCGACCCCCCGACCTGATCGCCCC 2931984 28 96.4 33 .............T.............. AATCCCGCCAGTCACCGCAGGCATGCAAATCGA 2931923 28 100.0 32 ............................ TCGACAAAGACGGCAACCCCGCATCCCGCACC 2931863 28 100.0 32 ............................ ATGATGCAATCTGCCAATTCAGGCTTTGAGAT 2931803 28 100.0 32 ............................ TCCTGGTTGCGGATCTCCGGCCGCGGCCGCGC 2931743 28 100.0 32 ............................ CGTGACTAGTCTCCTGACGCGGTTCGGGGACT 2931683 28 100.0 32 ............................ TCCAGCATGGAGGAGTTCAATACCGCCGTGGA 2931623 28 100.0 32 ............................ TTGCGCGCCTCACGCGCCGCGTCGGTCTGACG 2931563 28 100.0 32 ............................ CTCGCAAGGTCAGTCTCGATCGCGCGCAGCAG 2931503 28 100.0 32 ............................ CTAAGCACCCAGCGGTCGGTGTCGCAGCCTTC 2931443 28 100.0 32 ............................ TAAACGCAAGGCTGGCGCTCCTGACCGAGCCC 2931383 28 100.0 32 ............................ TGCGGCGTAGCTCGGGTGACCGCGCCTACCCG 2931323 28 100.0 32 ............................ TGGTCCCCCAGCCATCCCAAGCCCCGGATTTC 2931263 28 100.0 32 ............................ GGGAGAAAAACCGGAGTGAGTTACACCCCGCC 2931203 28 100.0 33 ............................ GGAGTTCAGCGCATCCCTCGACGTCGATTCCTG 2931142 28 100.0 32 ............................ TCGCCAGCCATGCTCATGAGGTTCCCGCCAGC 2931082 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.8 32 GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Left flank : ACCTGCTCCAGCAAGTCTACCAGGCCCGGGAAGGACCACAGCCTCCGGCCGATCTGTACCAGAAAAACCGCGGCAAGCTCGACGCCTTCAACGACCTATGCGTGGATCACTGGGACTGTGCGCACGAAAAGACGCGGCAACTGGCGCGCGAGTTCACCCATGACTGGGAGGCGATCTGGGCCGTTCTGGAGTTTCCGCGGTTGCCCATCACGAACAATTGGGCCGAACAGGCCTTGCGGCACTGGGTGATCAGCCGTCGCATCAGCCAGGGCACCCGGACCGAGCAGGGTTCTTTGGCCTTCGCGCTCCTCGTCAGCGTGATCGAAACCTGCCGCAAGCGCGGGGTCTCGCCCTGGCCCTACCTGGCTCAGGTGGTCCAGCAGCGGCGCAAAGGCGAGCCGGCCCCCGTTCTGCCTGAACCCGCCCCGGCACCATGACCTTTCGCCGCATGCGGTTGTAATACCAGCACTCAAGCCTGGGGGAGTGAACGCATACACAGC # Right flank : TACGGAGGGGTGATGACTGATATGGTATGACTTTAGCTGCCTGAAACGGTTGGCGCCGGATGCGCCGAGGGGTGGGGTGTCTCAGGCGGCCTGGGCGGCCGGTGCGGGCCGGACGAGTTCGAGGGGTTTCCCAGCGATGGCAGCCTCGGTCAGACGGCGCACGAAGGCAAGCGGCTCGTGTCCTTGCAGTTCGCCGGTGCGGAACAGGGACAGCAGCAGGGCGTGCGTTTCGGCACCCGCTTCGGAGCGGTTCTGCTGGCAGACCTTGCGGGTGAGCACGGGCGTGCGCATCTCTTGCTCGCCGCGGTTATTGGTGGGCGGCAGGTCCTGATGATCCAGGAAGGTCAGCAGTTCGCCGCGGAAGTTGCCCAGGCGTTTGACCAAGCGCATGGCATCTTTATCCTGGAACGAGGTGGCGATCAGTTCGTCGAGGCGTTGGTGCAGGCGTCGTTTGCGGCGTTGGTAGACGTGCGGTTCCAGTTCGGGGCGGCGCAGCTTCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //