Array 1 5560-4796 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELM01000110.1 Thermus scotoductus strain 38_S38 NODE_19_length_20697_cov_36.9588_ID_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 5559 29 100.0 32 ............................. ACGAGGCGCAAGGCGGGCTTGGGCTCCTCGCT 5498 29 100.0 32 ............................. TCCTGGTGCTCGCCCCGCACACCACCAGCATC 5437 29 100.0 34 ............................. GAGCTCCCCCCGGAGGCCCTGGCCCTCGGAGAGC 5374 29 100.0 32 ............................. TCCGAGCCGGGCGGGGCCATGAGGCGGCCCTG 5313 29 100.0 33 ............................. ACAAACAACGCCCCCCAACGGGACCCGGACGCC 5251 29 100.0 32 ............................. ATGCCGCATCCATAGCCAAATACGGTCGGAGG 5190 29 100.0 34 ............................. GACCAGGGTCGGGTTGCGCCCTCCGGTCACAACC 5127 29 100.0 31 ............................. ATAGCGCCGAGCCCGGGGGAGCGCCCCGGCC 5067 29 100.0 32 ............................. ATGCCGCATCCATAGCCAAATACGGTCGGAGG 5006 29 100.0 32 ............................. GCACTCTGGAGGACCGCACTCCCGGACGAGAA 4945 29 96.6 32 .........................A... AGGCCAGGGAGGACGGTTTCGCTCGCAGCCCA 4884 29 100.0 32 ............................. GCGGTGGTGATGCCGTTGAGGGTGGAGGGGGT 4823 28 89.7 0 ......................-...T.A | ========== ====== ====== ====== ============================= ================================== ================== 13 29 98.9 32 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : TGCCCACCAAGGAACAGGTCCTCGAGGCCCTAAAGGTGGTCTATGACCCGGAGATTCCCGTGAACATCGTGGACCTGGGCTTGGTCTACGACGTGGAGATCCACGAGAACGGGGTGGTGGACGTCACCATGACCCTCACCGCCATCGGTTGCCCCGCCCAGGACATGGTGAAGGCAGATGCGGAAATGGCGGTGATGCGCCTTCCCGGGGTGCAGGGGGTGAATGTGGAGTTCGTTTGGACGCCTCCCTGGACCCCTGCTAGAATGACCGAGGAAGGCAAGCGCATGATGCGCATGTTCGGGTTCAATGTGTAGGGGGCTCAGCTGGGTGGTATAGTGGGCCTCGAGGTGCGAGGGAGCCAGGTGCGTACAGAAGGCTTTTAGGCTCCGGATGTGCGCCTGGGCTTACGCACGGGGGATCTTGAAAGGCTAATCTGGACTGGCTCCCTTTACATACACATAGAGGGGGGTCGGCGGGGGTTTTTGCCGTCTGGGTCATGT # Right flank : GGCTGGGTTTATGGTGGCGCACCGTGGATTTGGCGATAGGGAAGCTGGGGTGGTTTCAAGCCTCGTTTTCTTCCTGCATGGGTCCACTCCCCAGGTTTCCAGGTAGAAGGCTCTCAGTTCCTCGGGTGATATCGGGGAGATTTCCCGTGGAAGTGGGCTTCCGGTTCGGAACCTCTTGCCTGTTTTCCGTCGGACGGAAAGCCCTACCTCACCTTTCCCCTTGTTTCGGGGATGGATCCAGAGGGGTGCGGGGGTTTCTACCGCCTTGCCCGGTTTACGGGGCTCCCTCTTCGGATCTGGCACTGGCTGGGCCTGAGCGCACCACCAGGGTGTCGGCGATGAGGTCATGCCAGGCCTGGCGCTTAGGGTGGAAGAAAGCCCAGAGGTAGCCAAGGAGGAGGGGCAGGGTGGAAAGGGTCTTGCCTACCACCTCCCGCATAAAGGCGGTGAGCCAGTCCACAGGCTGGCCGTCCGTGCGGACCACCTTGAGGCCCAGGGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 48-260 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELM01000372.1 Thermus scotoductus strain 38_S38 NODE_435_length_488_cov_0.958449_ID_869, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 48 29 89.7 34 ............A...G..........G. GACCAGGGTGGGGTTGCGCCCTCCGGTCACAACC 111 29 96.6 31 ................G............ ATAGGGCCGAGCCGGGGGGAGAGCCCCGGCC 171 29 100.0 32 ............................. ATGCCGCATCCATAGCCAAATACGGTCGGAGG 232 29 82.8 0 .............G........CTA...T | ========== ====== ====== ====== ============================= ================================== ================== 4 29 92.3 33 GTAGTCCCCACGCACGTGGGGATGGCCCG # Left flank : CGTGGTTATGGCCCTATGCCGCATCCATAGCCAAATACGGGCGGAGGG # Right flank : CCGACCGTATTTGGCTATGGATGCGGCATCGGGCCATCCCCACGTGCGTGGGGACTACGGCCGGGGCTCTCCCCCCGGCTCGGCCCTATCGGGCCATCCCCCCGTGCGTGGGGACTACGGTTGTGACCGGAGGGCGCAACCCCACCCTGGTCCCGGCCATCCCCCCGTTCGTGGGGACTACCCTCCGCCCGTATTTGGCTATGGATGCGGCATAGGGCCATAACCACG # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCACGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4709-2663 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELM01000188.1 Thermus scotoductus strain 38_S38 NODE_26_length_17958_cov_60.0366_ID_51, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 4708 29 100.0 32 ............................. TGGCACCGCCCGCGGTATCGCCTACATGGACA 4647 29 100.0 32 ............................. AAGCGGGCCATTTTTGACCGCATGGGCTTGTC 4586 29 100.0 33 ............................. TTCCCCAAGGGCGTGGAGGTGATGACCCTCCAC 4524 29 100.0 33 ............................. GTGTACGTGGCCTTCCGCCACGGGGGCGGAATC 4462 29 100.0 32 ............................. CTCAGGCTGGAACTGGCGGCTATAAACGACAA 4401 29 96.6 32 ............................C CCTTCCCCGGGACCCGGGCTACCTGCGGGCCC 4340 29 100.0 31 ............................. GCGGCCCCCACCTCCAACGGTAAGGGCATCC 4280 29 96.6 34 ............................A GAGGCTAGGCGCATACAAGCCGAGAAAGAGGCGC 4217 29 100.0 33 ............................. TAGCTCCCCAAGGGCGTAGGCCGAAGCCTTCTC 4155 29 100.0 32 ............................. AGCTTAGGCCGTTCCTCTTCGTTACGGACGAG 4094 29 100.0 32 ............................. ATGCGCCCCCAGGGAAGGGCCAAGAGGGCGAA 4033 29 100.0 32 ............................. GCTTCCATCACCGGGGAGCTTCCCATTTCGGA 3972 29 100.0 32 ............................. ATCCGGGCCGGGGAGGACCCCGCCCTGGCCCT 3911 29 96.6 32 ............................T CCGGGCCGGTTTACAACGGCCCATGCCCTCCG 3850 29 100.0 32 ............................. CATCGTGAATAAATCCCACCACAACCCCTCGT 3789 29 100.0 32 ............................. GGGGTGGGTGTACCACCCCCTCCCTTTTTGCT 3728 29 96.6 32 ............................T CCGGGCCGGTTTACAACGGCCCATGCCCTCCG 3667 29 100.0 32 ............................. CATCGTGAATAAATCCCACCACAACCCCTCGT 3606 29 100.0 32 ............................. ACCTGGGTTTTCCCGGTGGAGCGCTACCTAAA 3545 29 100.0 33 ............................. GGAATCCCGGACCTTCTGGCTATAGACCCCCGC 3483 29 100.0 32 ............................. AAGGGCCGGGGGTCGTATCCGGTCACGTGGAA 3422 29 100.0 31 ............................. GCACTCTGGATGGTGGCCGCTACCCGGGTCA 3362 29 100.0 32 ............................. GGTCCGTTCCAGTAGGGAGTTCAAGGAAGCCA 3301 29 96.6 32 ............................T CGCCGGAGCCCCACAGTCCCCTCCCTAACCCT 3240 29 100.0 32 ............................. CGGCGCTGGGAGAGGAGGGTGTCCACCGGCCC 3179 29 100.0 32 ............................. ACGTGGGTGCGGGTGTACCCGGCGCGGGAGCC 3118 29 100.0 31 ............................. GCAAGGATGGTGGGGAGCTCCTCCTCCCCGA 3058 29 100.0 32 ............................. AAGCGCTTCATGGCGGCCCGGGAGGGGGGCCT 2997 29 100.0 32 ............................. CTTGGTAAGCGCGCCGCGAATCGGCTTTAGGA 2936 29 100.0 32 ............................. ATAATACTTCTCTGGTTCGAGAGGATATTGGC 2875 29 100.0 32 ............................. CCGAGGAAGGGGGTGGTGCCGCCGTGGGCGAA 2814 29 100.0 32 ............................. CCGGTAGCCCTGGTGGAGAACGCCATCCTGAA 2753 29 96.6 33 ............................A GTGTCGTTCAAATACACCGGGTACAGCCCGGAC 2691 29 93.1 0 ..............C............T. | ========== ====== ====== ====== ============================= ================================== ================== 34 29 99.2 32 GTAGTCCCCACGCATGTGGGGATGGCCCG # Left flank : TCTCATACTGGCGGGTCGGGGCCTGATGATATAAGAGCCTCCCGGCAGCGAAAAGGGCTAGGGCCTCCACCGGATGCAAGGTGGGAGGTCGGTCCGGAATGCGGTAAAGGCCGCGGCCAAGCTGCTCTATCCTGTAACCGGCATGGGACAGGGCCTCGAGGTCCCGCTCCACGGTGCGCACGCTCACACCGTAAAGCTGGGCCAGTTCGGAAACCCGGTGCGGGCGAAGGCTAAGGCGCTCCACCAGGGACAAAAACCGTTCCGCCTTGGACTTCGGGTCCATAGTTGGAAGCATTATAGCCTAAGTTCCGCTATACTGGGGTTACCTGCCCTATCCCTAGCTAGACGTTCAGGGCACCTTGGGGCAGGGGGGGTTCTTGACAAAACATCCCTCGCTTCTCACGGGGTTCGAGGCTTTAAACGGGCCTATTGTCTGGAATAGCCCCCTTTACAGACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTAGGTCATGT # Right flank : AGAATGTACAAGGTTGCCCCGTAGGATAAGCCCCCCAAAGCTTCGGCCAGGAGGGCCTCCAGCCTTCGCTGGAGGTCCATTTCCAGGGGCCGGAGGGCTAGCTGTAACGCGCCCGTAGGCGTGAGGAGGGAGAAGTGGAGAGTCGCCCGCCTGGGCGTGGGGCTTTCCCTGGAGAAGATCTACGAGAGTGTGGAGCTAGGGACTTCTTTCCAGGCCGACTTGGGGGCCAGGTAGTACCATGGAAATGCCATGGGGCCCGAGGAGGTCAAGGCCAGGATAGGGCCTTACCGGGAAGAGTTGAGGGAGCGTTTTGGGGTGGAGGCCCTCTACCTCTTTGGCTCCTCGGCTCGAGGGGAAGCGGGTGAGGGAAGCGACGTGGACCTTTTGGTGCGCTTTTCCCGTCCCCCGGGCTTTCTGGGCTACATGGGCCTGAAGCTCTTTCTCGAGGACCTTCTAGGCAGACCCGTGGACCTGGTCATGGAGCACACCCTGCGGCCGGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCATGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACGCATGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14858-16106 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELM01000188.1 Thermus scotoductus strain 38_S38 NODE_26_length_17958_cov_60.0366_ID_51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14858 29 100.0 32 ............................. AGTGGAGGGGTGGGCGTCCAGCGCGGCGAGAA 14919 29 100.0 32 ............................. GGTTCCCCTGGCCGCATCCTGTTCAGGTTCTC 14980 29 100.0 32 ............................. CCAAGCTTAAGCCCCATGGCGAGGGCCAAAAG 15041 29 100.0 32 ............................. ACCACGTGGCTCAAGGGCGAGGTGGAGCGGCT 15102 29 100.0 33 ............................. CAACACGGCAAACTCTGCCGTAAACGACACGAA 15164 29 100.0 32 ............................. TCCAGCACCGAGGCCCTGTACGAGTAGCCGAG 15225 29 100.0 32 ............................. GTCCACCACCAGGGGGATCGCCCTCTCCACGA 15286 29 100.0 32 ............................. CGCTGGGCCTCACACAAGAAGGCCTCGCCCGT 15347 29 100.0 32 ............................. GGAAGGGGTACATGGGGGCGGTGGTGGCCTGC 15408 29 100.0 31 ............................. GGTAGAGGATCCCAAGCCCCCGCCCCCAAGA 15468 29 100.0 32 ............................. GCCTTCCACCTCTCCCTCCTCGCTTCCCCCGA 15529 29 100.0 32 ............................. AGGCCCCCTGTACCTCCACGGCAACCTTGCGC 15590 29 100.0 32 ............................. ACGCTGAACCAGCTCAGCCCCATCTGAAACAT 15651 29 96.6 32 ............................T GCTGGGAGGCCCTTTCCTCATCCGAGCTAAGG 15712 29 100.0 33 ............................. CCGCCGCCACGAACCCAGCAGCGAATCCCCACC 15774 29 100.0 31 ............................. ATGGGGAGTCCTGTGGTGTCTCTGAGCTTGC 15834 29 100.0 32 ............................. CTCCGGCGAAGCCTACCGGTATCGGAAAGCGT 15895 29 100.0 32 ............................. ACCAGATACAGGGTCTTTCTCGCCCACCGGAC 15956 29 100.0 32 ............................. AGGGGGTCGCCGTCGTCGACCAGAGGGCCAAC 16017 29 100.0 32 ............................. AGTTGGGACCGCTTAACGCTCAATAATCCAGC 16078 29 82.8 0 ........G.T...G.C..C......... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.0 32 GTAGTCCCCACACGCGTGGGGATGGCCCG # Left flank : CCAGAGGAAGAGGTGGACGAGGAGGACCCGACCCGTCCGGGTGGCCTGTGGGACCCGGAGGGAGTGGTGGAGGGTGGGGTGGCCTATGGTGGTGATGATCCTGGAGAGGGTGCCGAGGAGCCTGAGGGGTGAGCTTACTCGGTGGCTGGTGGAGGTGGATACTGGGGTTTTCGTGGGCCGGGTGAGCGCTGCGGTGCGGGAACTCTTGTGGGAGAAGGTGGTGGAAAAAGCGGGTGAGGGCCGCTGCGCCATGGCCTGGCGCACGAATAACGAGCAGGGCTTCGCCCTCCGGCTGCACGGGTATCAGGACCGGGTCCTCAGGGATTTTGATGGTATAGTGCTGGTAGCGGTGCGCAACGCCGAGGCTATGCGAAAGGCGGATAAGTTAAATGGCATAGCCCGGTTCGCACGCGGGGATCTTGACAGTTAATCCTTAGACTGGCTCCCTTTATATACACATAGAGGGGGGTCAGCGGGGGTTTTTGCCGTCTGGATCATGT # Right flank : GGTAAGGGGAGCAGTGAAAAGGCTTTTGCGCAAGCGCTAGAGGGCAAGTAGCTTCTCGAGGGCCTTGAGGTAACGGCCCTGTCAAGGAGCCCTCCCCACCGGGTTTGGGGCCACTCTCCGCTTAGGGATGCGGGCTCAAGCCTAATACCCTCCCCGGGCTAAAGCACTGGGTGTGGTGCGCGAAAGCCATCTTTCGCGCACTCCCACCGTGGCCACCCGCCAAGCCCTTGGACCCCAAGCCTAGGGGCTAGAACCGTCCTAAAAGGCCCTACGAGCCCCCAGGCCTCCTGGCCCAAGCCTCTTCCGTGTCCACAAGGATCCGCTCCAGGACCCTCCAGAGGGCCTCGAAGTAGTCCTTCCCCCGGTCCAGTTGGCGGAAGGCTCCCCAGAGGAGGGCCCAGTACAGGCGGAAGCTGGTGGGGTCCCGGAGGGCGGCGGCCAGGGTCCTCCCGGCGGTCCGGGGCCGTCCTTCTTTGGTCTCCTCCTCCGCCACGTAGAGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACGCGTGGGGATGGCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2218-2006 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELM01000473.1 Thermus scotoductus strain 38_S38 NODE_78_length_10068_cov_38.635_ID_155, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2217 29 96.6 32 ............................T GCCGCCCCAAAGGAAGGGGGGCACCTCCAGGC 2156 29 100.0 32 ............................. CCCGACACCACGAAAGAGGTGAGCAACGCCTA 2095 29 100.0 32 ............................. CGGGAGCTCATCCGGGAGCTCATCCAGGAGCG 2034 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTAGTCCCCACACCCGTGGGGATGGACCG # Left flank : TTGGGGTAGGGAGCGGGCGAGCTTCTCCAAAGCGGTGCGGTACTGGCGGGTCGGGGCCTGGTGGTAGATGAGCCTTCCGGCAGCGAAAAGGGCCAGGGCCTCCACGGGATGGAGAGGTGGGGAACGATCCGGGATAGCGTACTCTCCTCGGCGGCGGCGCTCCACAGGGTAGCCGAGGTCTATCAGGGTCTTAAGGTCTCGCTCCACGGTACGTTCGCTCACGCCAAAGCGCCGGGCAAGCTCTCCTACCCGCATAGGCCGGAGCTTCAGCGCCTCGGCTAGCTGAAGCAGTCGGGCGCTTTTCGCTTCCTGTCCCATATCAGCAGTTTAAGGGAGTTTCCGGAATTGCTGCGTGAAGGTTAGCCGTGCTAGACTACAGGTGGTGCCCCCTTTTCCTCCCCTTCTTCCGGGGCTGCGGAGCTTGACGACATTACCTGTTCTGCCTCCCGAAAAGACACATAAAGGGGGGTAAGCGGGCGTTTTTGCTGTCCTGATCAAGT # Right flank : GAAGTGAGCCCGGAAAGGGCAACTGGGGACGGGGTCAGGGAGCCTTTTAGAGCGGGATATGGCCCATGGGTCAGGGGTCACGGGGAAGCATACCTTGCAGCCCCCGTTCTTCAGAACGGGGAGTTGTCACGGCTAAAGCGGGAAAGGGGGTCCGGTTCCCCCACGAAGGCGTGGGCGGTCATGGGGGAATGAGGACGGCTTGTTCGGGAGCCAGGTGGGTTTCGCCAGCAAAACCCCCTTGCCCTTGAGGACCAAGGCCACCTCCAGCCTTTCCCGGTGGTAGGGCAGGGACTGCTCCTTAACGGTACAGATGAGGACCGAGGTGCCCAAAGGGGTCTCCCCCACCCCCTGGGCGGCGAAGGGCCGGCCCGGGGGCACGGAGAAGTTGGCGAACTCCCCGGGGTAGCGGCGGAAGATCCCCTCCCCCGTGGCCGGAACCAGGGCCCAGGCCCGGCCGGCCAAGGCGGAAACCAGAACCCCACCTGCAACCTGCAAGAACC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACACCCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTAGTCCCCACACGCGTGGGGATGGCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2236-3060 **** Predicted by CRISPRDetect 2.4 *** >NZ_PELM01000090.1 Thermus scotoductus strain 38_S38 NODE_181_length_3611_cov_53.5525_ID_361, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2236 29 100.0 33 ............................. CGTGGGCTCCATGGAGTCCCCCTTGACCCGCAC 2298 29 100.0 32 ............................. CTCAAGCTCCCCTTCGTGGAGGTGGTGGACAC 2359 29 96.6 32 ............................T CCTGAAGGAGCGGAACGTGGCCCTGGCCGCCA 2420 29 100.0 32 ............................. GCCAAGGGTAGAACCGCAAGGGTCCTGAGTAC 2481 29 100.0 32 ............................. GCCGCGAGGGAGAAGGGCCTCGCGGGGAAGAC 2542 29 100.0 32 ............................. GTCATGGGCCCCGCCTGAGTGGGAACGGCTAC 2603 29 100.0 33 ............................. GGGAGTGGGGCCAGCTCACCCAGGAGGCCCGGC 2665 29 100.0 32 ............................. CCGTCCATCACCACCTCCACGTTGCGGAAGGC 2726 29 100.0 32 ............................. CCTGGACGCGGACCCCGACACCACGAGCCTGG 2787 29 100.0 32 ............................. CCATCGCCTCCGGCGACCTGGCCGCCATCACT 2848 29 100.0 33 ............................. GATCCCCTCCTCATCGTAGGAGATCCAGAGGCC 2910 29 100.0 32 ............................. TTGCCGCGCCGGCGTACTCAATAACCGCGTGG 2971 29 96.6 32 ............................T GTCCGCTACGCTGCCACACACCAGTACGGGGC 3032 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.5 32 GTAGTCCCCACGCCCGTGGGGATGGACCG # Left flank : GGATCCTACCCGCCCGGGGGGCCTTTGGGACCTCGAGGGCGAGGTGGAAGGCGGAGTGGCCTATGGTGGTGATGATCCTGGAGAAGGTTCCGAGGAGCCTTAGGGGGGACCTCACCCGCTTCTTCGTGGAGGTGGACACTGGCGTTTTCGTGGGCCAGGTGAGCGCTTTGGTCCGGGAGCTGCTTTGGGAGAAGGCTCTGGAGAAGGCGGGCGAGGGACGGGTGGCTATGGCCTACAGGGCGAACAACGAGCAGGGCTTCGCCCTCAGGCTTCACGGCTACACGGACCGGTTTTTGCGGGACTTTGATGGTATACTCTTAGTGAGCACTCGGAACGCCGAGGCAATGCGAAAAGCAGAGAAGTTGTCCAAGTTATTTGCGAGGTACGAGAAACGCCGTGCCAAAGCTTCCGAGGGGGATCTTGAAAAGGAAAATCCGTAGCCACTCCCAACTAGACACATAACGGGGGGTGAGCGGGCGTTTTTGCTGTCCTGGTCAAGT # Right flank : GGGCAGGAGGTAGAACCAAATGGGTGACGACTCCCCGGACTAAAGTCCAGGGCTTCTCGGGCATGGTATTGCTACCCCCGAAGGCCCCGTCCAGGCCCTTGCCAGGATGTTTTGGGCAGCGGCCACATCCCGGTGGAGAAGCGCCCCACACTGGGGACAGGTGTACGCCCGCACCCAGAGAGGCTTCTTCTCCCTATGGCCGCACACCGGGCAGTCCTGGCTGGTGTACTTGGGGTCTACCTTGATGACTCGCCTACCAGCCTCTTCCGCTTTGTAGGCGAGGATTTGGAGAAACTGGGCCCAGCCCGCGTCGTGTATGCCTTTGGCAGCGTAGGAGCGGGAGAGAGCAAGGATGTTCAGGTCTTCGTGGACGATGGTTCCATAGCGGTTTACCAGCTTCCTGGCTACCTTGTGGTGGAAGTCTTTGCGCTGGTTGGCGATCTTGCGGTGGAGCTTGGCTACCTTGAGCCTGGCCTTCTTCCTGCCGCTCTTTCCCTTCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGTCCCCACGCCCGTGGGGATGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //