Array 1 80908-80345 **** Predicted by CRISPRDetect 2.4 *** >NZ_POWV01000008.1 Neisseria subflava strain C2007002879 C2007002879_S10_ctg_1811, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 80907 35 83.3 30 AAA.....AT.-........................ GACGGCTCGTTGGTAAAAAACCATCTTGAA 80842 36 100.0 30 .................................... CAGGGATACCGTGAATAAATATTTTCCGAC 80776 36 100.0 30 .................................... ACCACCGCCATTGCTTCCGCCACCGCCACC 80710 36 100.0 30 .................................... CCGTCCATCACTTCAAGGGCGTACAAGTCG 80644 36 100.0 30 .................................... AAAGAAGAGCAGGAAGAGAGCATTAGACGG 80578 36 100.0 30 .................................... TCCATAAACAGCTTTTCGCTGACTGTCTTT 80512 36 100.0 30 .................................... TCTTCGAACTGGCGTTTGCGTTGTAAGAAG 80446 36 100.0 30 .................................... CACCTGCCAGTGCAACCGTGAACAAACTGA 80380 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 98.1 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TCGGCCAAACAACGGCTATATACCTAACCGTTCATCTCCTTACCGCACATTTCAAAAACGCCAACCACTTTACAGCATTCGCTGGCATGAGCCCGCAACAGAAAAAATCAGGGACAAGCGTCAACGGCAAAGAAAAGCTGACAAGGTATGGCAACAGAAAACTACGCGGCGCCCTCTTCATGGCCGCCATGGTAGCTATGCGTCAAAACTACTTTCCCGACTTCACCAAAAGACTGCAAAAAGCCAAAAAGCCCAAGATGGTTATTATCTGCGCCCTGATGAGAAAGCTGCTCGTCATTGCCTACCATCTGCACAAAAACCAAACCGACTTCGATCCGAGTCGGTACAAACAAGCGTAAAGAGCCTTAACAAAAACGCAAAAGCCACGCGGATAATCGTAAAATATTCGCGCGGCCAAGTTCATTCTGAAAAATTTCAAAACTAAATAAACAGAAAAAACAATAATATACAAAAATGACAGTAAATTACTATTGCATGTT # Right flank : ACTTCGATGGGAAATCCTTATTCTATAAGGGTTTCCCGTTTTATTTTGTCTAATAAAATGAGCTTAAAATAATAATAGTTGGTCGGAATTTACCCTTTTTTCTTGGGTTTTCAGCTCTCCCAACAGCAGTTTCATGGTGGCATATTGCTTTTCTGTTACTTCCAAACAGCGGATTGAACCTTCTTGCGGTAGGTTTGCACATAGCCTATTGTGGTGTTTTTGTAACGAGTCTCGACCTTTGACAATACGGCTGTATACAGAAAGTTGGAGCATTTGGTATCCATCTTTTAATAGAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGTTGTGGTGACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGCAAGATTTCAGGCAGTTTCAGCTGTTTGGCGTTTTTATCGGTTACGCTGGCTTGAAATGAGGAAATCATTTTGTCTATGGCAGCCAAGGTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 2 88946-88777 **** Predicted by CRISPRDetect 2.4 *** >NZ_POWV01000008.1 Neisseria subflava strain C2007002879 C2007002879_S10_ctg_1811, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 88945 36 88.9 30 T...G..GC........................... AAACAGCGACTGATTATGTTGTGTCTCAGA T [88939] 88878 36 100.0 30 .................................... GCGGCATATTGTTGGCAGCCTCTTTTATCA 88812 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 96.3 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TGACATTAGGTTCTAAATTAGAAGCTTGGCCGCCTGTAGGCTTAGAAAAGCCGTAAGTTTGAAGATTAAAGGATAATGACATGCGTCATCGTAATGGCAACCGCAAATTAAACCGTACTAGCAGCCACCGTGCTGCGATGCTGCGCAATATGGCGAATTCCTTGTTGACTCACGAAACCATCGTGACAACTTTGCCTAAAGCAAAAGAATTGCGCCGCGTAGTTGAGCCCTTGATTACCTTGGGCAAAAAACCTTCTTTGGCAAACCGTCGTTTGGCTTTTGACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGCGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGATAAAGCAGCTGATTCTGCTGAATAAGCACATTAATATGAAAGCACTACCTGTTTAGGTGGTGCTTTTTTA # Right flank : AATTCGTTTTTCCTTGTACGGATTAAACGGGTTGTAGCTCCCTTATATATTTCGCTCCATCGAGGGGCGCAATTTTTTACACTTCTTATAGAACTTTAAGCCCCTTTAACTCTAGCCAGTGAAGGGGCTTTCTTATGTGCATCGCATTTTATACAGTCAATTCAGATAGTTTTTACAGTTTTGAAGAACAAAGAGCCGTTATCGTCCGCGTTTTCAAAGATGATGAGCTTGTAGAAACCGTTTCATTTCCTATTACAAATCCCAAACAAAAATATAAAACAGAAAAACAGGCTGAAGAGTATGGCCGTCTTGCTGTCCGTTCTATTTTGAACCAATGGGAGGCAGACGCATGAGAGCCGAAGAGAGAGCAGAAACGGCGGGGGCGTGTGGGGGCGCGCCTTGCGCGCCGCAAACGGCCACGCCGTTGAATGCCCCCCCTAGGCTAATAGGGGGGGAGCAAAAAAAACCTAATCCACAAAGTGGGGAGCAAACCGAAAAAA # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 1 30015-32575 **** Predicted by CRISPRDetect 2.4 *** >NZ_POWV01000001.1 Neisseria subflava strain C2007002879 C2007002879_S10_ctg_1797, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 30015 33 100.0 32 ................................. CAAAGTTGGCCGAAAAACCAGAATCCAAACCG 30080 33 100.0 33 ................................. TATACAAAAGAAGACTAAATTTAAGAGACTCGG 30146 33 100.0 33 ................................. AAAAGGGAATGACAGACTTTTGAACTGTTCGAA 30212 33 97.0 33 A................................ CCGATTTTGTCAAACGCCTGAAGGCCAAAAACA 30278 33 97.0 33 A................................ TTGGTATAAATGTGTTACAAACCTTGATAATCC 30344 33 100.0 33 ................................. TTGGTATAAGTGTGTAACGAGCCTGGATAATCC 30410 33 100.0 35 ................................. TTGGTATAAGTGTGTAACGAGCCTGGATAATCCCG 30478 33 100.0 33 ................................. CAAAATGGTGCAAAGGTCGGCAGTTAAGAGATA 30544 33 97.0 33 T................................ ATTGGAGATTCTCCTTACTCATAATTTCACTTA 30610 33 100.0 33 ................................. CATAAAAACGCAGAGCGGTTCATAGCTGATTTG 30676 33 97.0 33 T................................ TATAAAAGCTGTTACCAACTTGGCCCGGATAAC 30742 33 97.0 35 G................................ AGCAACAAGATAGCCTGAATACGCATTACAAAAAT 30810 33 100.0 33 ................................. AAATGCTCGAAAGCAGCTTTATCGACTAAGCCG 30876 33 97.0 33 G................................ CCTTGGGAAATGTCGGTTTACGCGCAGGCGGAA 30942 33 97.0 33 T................................ CTTTTTCATTGGAGATGCTCCTTATTCATGATT 31008 33 100.0 33 ................................. GTTATCGGTTTTCAACCCGTTAAGAAAGGCTGA 31074 33 97.0 33 T................................ AAGAATTAACTGAACTCCGCCATTATGGCCATA 31140 33 100.0 33 ................................. TTCGTCGGTATGTTTCATTTTCAAGTTCCTTCG 31206 33 97.0 33 T................................ TTTGATTATGATGCTTTGCATAAAGACACTTTA 31272 33 100.0 35 ................................. ACTCAAAAAATTGGTTTGTCAACTCGCTATGGTTT 31340 33 97.0 33 G................................ AGGCAAAGCAGCATAAGCAGATGTGGCCAGTGA 31406 33 100.0 34 ................................. AAGGTGTGTATGTTTTGAAACGAGATTGCGTACA 31473 33 97.0 35 A................................ AAGTTGCTTCAGTGCTTTGCGTATCAGCAATATAA 31541 33 87.9 34 G...........TA...G............... TTAGTATAGGGTTTATACATGCGCAATATATCCC 31608 33 90.9 34 ............TA...G............... TTAATATAGGGTTTATACATGCGCAATATATCCC 31675 33 90.9 33 ............TA...G............... ACATAGCCCGCAAACACATTTTTTAAACATTTC 31741 33 90.9 34 ............TA...G............... TCGCCAAACAGTGCGTCCATCGCGCCCAATCGGT 31808 33 90.9 33 ............TA...G............... GGAATCCGCTGATTGATGCGGTGTGTAATGCCG 31874 33 87.9 32 T...........TA...G............... ACATAGCCCGCAAACACATTTTTTAAACATTT 31939 33 90.9 37 ............TA...G............... GGGGGCGGCTAAAGATGAAGAGAAGCGTTTTTAACTG 32009 33 87.9 34 A...........TA...G............... GGGGCGGAGGAAGGCAGATTTTGCAGTTTCTCCA 32076 33 90.9 34 ............TA...G............... GTCATTTAGAGGTAAAGCCAGATATAAAAATGGA 32143 33 93.9 34 .............A...G............... TTGTGATTCCTCTAAAGAACAACCGCAAAAGACA 32210 33 84.8 35 AT...........A...G....A.......... TTTTAATTGTTGCAGCAAATTAACCAGCTTATAGA 32278 33 87.9 33 GT...........A...G............... TTCGCGCATCAGGCGCGTGCCGATGCGCGTGAA 32344 33 93.9 32 .......A.........G............... CGCAAGGGCGATATGATCGTGATTTCCAACCG 32409 33 84.8 34 T......A.....A..TG............... CGCCCATGATGCTAAAGCAACCTTGGAAAAGCTT 32476 33 81.8 34 GA.....A........TC..........A.... TCTAGCAGCTACAAACTTTATGCCGACCTATCCC 32543 33 78.8 0 GT....A.........AG..........C...T | ========== ====== ====== ====== ================================= ===================================== ================== 39 33 94.4 34 CCCAGCCGCCTTCGGGCTGCTGTGTGTTGAAAC # Left flank : TGTATATGGGAATACAAAATGCTAATGCTGATTACTTACGATATTTCGTTGGAAGACGCGGACGGACAGGCAAGGCTACGGCGCGTGGCGAAATTGTGTTTGGACTACGGCGTGCGCGTGCAGTATTCGGTGTTCGAATGCGACATCGCGCCCGACCAGTGGGTTGTTTTAAAAGACAAACTCTTGAAAATCTACAACCCTGAAACCGACAGTCTGCGTTTTTACCATTTAGGCAGCAAATGGAGGCGGAAAGTAGAACACCACGGCGCAAGACCGGCAGTAGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAACTGGGATTGTTCTTTAACAATCAGGATATTGCGAATACGGACGCAACGGAAAAGGCTGTGTTATACTCGCATTTCTGCTTTTCTTGGGAGCTTAGCGAAATTGGTGCTGTGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : TATCGTCCAAGCAGGCCGCTCTTCTTTTGATCCTTCGCTTTCCGAGGCCTTAGTGAAAGCAGTAGAGGATATTAGAAGCAAGTTATAAAGGTTAATCAATAACAATGCCGTCTGAAAAAGTTTCAGACGGCATTTTTTCTATTTACATATTAAATTTAATATCATATTATCATTGTATCTGTATCAATTTGAATTTTTTAGAATTTCAATATGAAACCCCTAATTTACTACGTCCATTCCGTCCAATATGAACTCGGCAATCTCTTACCTTACGAACATTGGCAAACCTTATAAAGCGATTCGGTAAATGTTGGCGAAATGGTGGCGGAGTTTGCCCGAGTTTTTGGGGCACAGGAAATTACCTGTTAAACGGGACAGATTCATGACTTAGGGAAATATTCGGAAGCCTTTAATTATCGATTGCATGGCGATCCTTCAGGTGATCATGCTACCGCCGGAGCGAAAATTGCAAAAATGCTTGCTTTAGAGTGGAGGTCAAA # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCTGCTGTGTGTTGAAAC # Alternate repeat : CCAGCCGCCTTTAGGCGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //