Array 1 159-1103 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CNCY01000025.1 Mycobacterium tuberculosis strain Bir 42, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence               	Spacer_Sequence                                	Insertion/Deletion
==========	======	======	======	==============================	===============================================	==================
       159	    30	 100.0	    43	..............................	CGGAAACCGCATGGACCCGGGCGAGCTGCAGATGGTCCGGGAG    	
       232	    30	  96.7	     4	............................C.	AGCC                                           	Deletion [266]
       266	    30	 100.0	    43	..............................	CGGAAACCAGCGAAATACAGGCTCCACGACACGACCACAACGC    	
       339	    30	 100.0	     5	..............................	CAGCC                                          	Deletion [374]
       374	    30	 100.0	    45	..............................	CGGAAACCCTTCGACGCCGGATTCGTGATCTCTTCCCGCGGATAG  	
       449	    30	  96.7	     4	............................C.	AGCC                                           	Deletion [483]
       483	    30	 100.0	    45	..............................	CGGAAACCTTCAGCACCACCATCATCCGGCGCCTCAGCTCAGCAT  	
       558	    30	 100.0	    47	..............................	CGGAAACCCGACGATGGCCAGTAAATCGGCGTGGGTAACCGATCCGG	
       635	    30	 100.0	     5	..............................	CAGCC                                          	Deletion [670]
       670	    30	 100.0	    42	..............................	CGGAAACGCCCCGTGGATGGCGGATGCGTTGTGCGCGCAAGT     	
       742	    30	 100.0	     5	..............................	CAGCC                                          	Deletion [777]
       777	    30	 100.0	    44	..............................	CGGAAACTGGACGCAGAATCGCACCGGGTGCGGGAGGTGCAGCA   	
       851	    30	 100.0	    47	..............................	CGGAAACGCATATCGCCCGCCACACCACAGCCACGCTACTGCTCCAT	
       928	    30	  96.7	    42	...C..........................	GGAAACCCTCATGGTGGGACATGGACGAGCGCGACTATCGGG     	
      1000	    30	  93.3	    44	......G...........A...........	GGAAACTTGAACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCGA   	
      1074	    30	 100.0	     0	..............................	|                                              	
==========	======	======	======	==============================	===============================================	==================
        16	    30	  99.0	    31	GTCGTCAGACCCAAAACCCCGAGAGGGGAC	                                               	       

# Left flank :   CCCGCCGGTCGAACTCGAGGCTGCCTACTACGCTCAACGCCAGAGACCAGCCGCCGGCTGAGGTCTCAGATCAGAGAGTCTCCGGACTCACCGGGGCGGTTCACCCCGAGAGGGGACGGAAACTCGGGGAGCCGATCAGCGACCACCGCACCCTGTCAG
# Right flank :  CGGAAACTACGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCCGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTGGTCAAGCGCGGCGAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGTTGGCCGATGAGCAGGCAGGCGAACGGGCT

# Questionable array : NO	 Score: 5.37
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.83, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGTCAGACCCAAAACCCCGAGAGGGGAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [9,2] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [0.00,-1.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.78,0.37   Confidence: MEDIUM] 

# Array family : NA
//