Array 1 83449-84253 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSZP01000005.1 Alcaligenes faecalis strain GZAF3 Contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 83449 28 100.0 33 ............................ TGCCCCACCTTCAAACGAAGCGTGGGGCTTTTT 83510 28 100.0 32 ............................ ACAAGAATACGGCTTATTTGGCCGGATTAATG 83570 28 100.0 33 ............................ AAGAAGGGAGGATTACCTCAGCATGCGTTTTTT 83631 28 100.0 32 ............................ TTAGAGAAGGCGAAAGTCCTGGCTGCTGTTCG 83691 28 100.0 32 ............................ ACAACTTGTTTGACGGACAGTTCCAGGCGGGA 83751 28 100.0 32 ............................ CGTACTCGAATAAACGTTACTTGCGCCTGAAC 83811 28 100.0 32 ............................ TGAGCCCACATACTCTGCGTTTACTGCACCAC 83871 28 100.0 32 ............................ AGTATGCAGCTCCAAAAGGGACAGCTGGTATA 83931 28 100.0 33 ............................ AGTCTGAGCATTGGGAGCCTGGGCAGGTTGTGA 83992 28 100.0 32 ............................ TGTCTGACCGAGTGAACCGTGAGCGGGTAAAT 84052 28 100.0 33 ............................ ATCTTGCCCACATATTCAAGCAGAACCTCCCGT 84113 28 100.0 32 ............................ ATGCTCGGACGTTGTGGGCGGTTGTCCACCCG 84173 28 82.1 26 ...........AA....TG.T....... CGCCGATCGTTCGAGGGGGGGTAAAT 84227 27 78.6 0 ....-......CT..A......CG.... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.2 32 GTTTGCTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACACTTAAATCAGGATTACGCAGGGCGGCTTGTACATCGCTATGTCTATGAACCAGCCAAGCCCCTCCGCAGAAATCCGCATCCCACACCAAAGGCGGCCCCTGCCGAAGGCGGGCATAAGCTGCATAGGGAGACGCAAGATTGAATTCGCCAAACATGACACCGTTTCCTGAAGATCAAAGCCAGCGCAGGCTAGCATTTGAGCCGGAAAGAGGCAGTCAGGAGATTGTGTCTATTAATTCTTTCTGGGTGTTTTGAGGGAATTAAAAGTTTGTTTGCGGTTTATGGGGGAGGTTGCTTGAACTGGTGTGACTATTTTTTACAATAAATTTGATTGGTGAGTTTGAGATGACTGCTTTCTCCTTGCAGAAACCCTTTTTTTATTGGTTTTGAAATCTTATTTAAAATCAGATGCTTATAAACTGGCCTGAAAAAAGGGTTTTGGTGGCAGAAAAAGCCATAAGATAGAATCTGCTTGGCATTCAGGGATAAACGCTCTA # Right flank : AAGCTTGTGGGTCTCTATCATGCATATGCAAAGTGTGCTGCTCTATGCGCCGCTGAAAAGGTGTTTAATTTCAGTTGTTTAGCCAGTTTTGTAATTGGTTGTCGCCTGTTCAGTTGCTAGACCGTTGCTGGTAGCGGCACTGTCGAAAATGTAGTTTAGGACTACCTCCCCAGCCTGCATTAATTCCAACTAATCACCGAGCATCAGAAGCCGCTGGAAGTTCTTCACTACCCAGTTTTTCCGTTTTACGCTGCGGCAACTTCCCATTCAAAATGAAGTACGCTAGCAGACCGATTACCAGCCCCCAGAAAGCCCCGCCAATCCCGAACAGCGTGATATTGGCTGCCGAAGCCAGGAAGGTAATCAAGGCTGCTTCCCGCGACTTGATGTCTGCCATGGCCCCCGCCAGGCTGCCGCCAATGGTGCCCAGCAGCGCCAAGCCCGCCAGTGTGGTGATAAAGGTCGCGGGGAAGGCCATGAATACAGCGGCCAGCGTGACC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 102812-104099 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSZP01000005.1 Alcaligenes faecalis strain GZAF3 Contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 102812 28 100.0 32 ............................ CGGTAGAAGCGCCACCACCGCCAGCGAAAAGA 102872 28 100.0 32 ............................ GAAAAACGCCAGCCTGTAGGCGCACAGGCCCA 102932 28 100.0 32 ............................ TACAGGCGGGGCCATCTGATAGCAGTCCTTCG 102992 28 100.0 32 ............................ ACACACGCGATATCAAGCTCATGGCACAGGGA 103052 28 100.0 32 ............................ TTCCTGCTCGCGCACACCAAACAGATTGATGC 103112 28 100.0 32 ............................ TGCCTCCTTAAATACGCCCCCACGAACGTCTC 103172 28 100.0 32 ............................ TTGGGCACAACTGGGCCAGCCGTGCACAAACT 103232 28 100.0 32 ............................ GCAGCGTCGGGAGATGATGCAAGCCTGGGCGG 103292 28 100.0 32 ............................ CAAGTCTGTGGCCGAGCTGGACAACAACAAAT 103352 28 100.0 32 ............................ TCGCCAATCACGGCCAGGAGCGCAACAGTTAA 103412 28 100.0 32 ............................ ACCACCGTGCGGGCGGGGATTTCTGTTAATCC 103472 28 100.0 32 ............................ AATATGCATCCATCTTGAACATGGAGGATAAA 103532 28 100.0 32 ............................ GAGCACTATGTCAGTGATGTGTTCGAGATCAA 103592 28 100.0 32 ............................ ATAGGGACGAAAGAGTTCTCCATCGTGCCGCC 103652 28 100.0 32 ............................ CAAGCAAGCTATTGTCCTTTTGGGCCAACGCC 103712 28 100.0 32 ............................ AATGACCCGAACCCTTCCTTGAACGGCGATTA 103772 28 100.0 32 ............................ TTCACAAGGCGGCACCCAGCCCAGGCTGAGAG 103832 28 96.4 32 .............A.............. CGCGAACCAGTTGACTATATAGAGTCGATGAA 103892 28 96.4 32 ...........C................ CGAAGAAGTTCGGTGCTCGTATCTGGCTGGAG 103952 28 96.4 32 ..........T................. TGAAATTTATCGCCCCCGCAGCGGGCTACTAA 104012 28 89.3 32 .................TG.......G. GTGGCTAACACAACAGCGAAGGACTGCTATCA 104072 28 92.9 0 ...........C.............C.. | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.7 32 GTTTGCTGCCGTATAGGCAGCTTAGAAA # Left flank : TCAGAGTTGCAGGGGCTGGAGCAAACGCAGTGGTTACGTGGTATGCGTGATCATATAGAGCTCAAGGAAGTGTGCCCTGTGCCGGAAGGAGTGAAATACCGAACCGTTTATCGTCGTCAATTTAAAACGAATGTTGATCGTTTGCGACGTAGGCGCATGAAGCGGCATGGTGAAACAGCGGAGCAAGCTGCCGCAGCGATTCCAGATCGTGTTCAACAACAGCCAGACTTGCCTTTTATACAGTTGCGTAGCCAAAGCACTGCACAAGCATTTTGCCTTTTCCTGGAAATGGGGCCGGAGCATGGAGTTCCTGCGGCCGGGGGGTTTAATGCTTATGGGCTAAGTGCAGAGGCGAGCGTCCCATGGTTTTGACCCTAATTTTTGGTGAATTTAATTATCTTTAAGAATCAATGGCTTGGGGTTTTGTCTAAAAAAAGGGTTTTGGAGGTGGGAAAGCAGGAAAGCGCTGAAGATTCAGCGCTTTCAGCGTTTTGACTCTA # Right flank : ATGTTTTCACAGCGCGAAGCATCTGCGCGTGATATTTGCCTTTTTCCGAAAATTGATAATAGAATTCATTCTCATTTGAAGTGCCTGCTTCGACCCCTCCACCCCTACTTCCAGCCCATCGCTATAACTTTTACAAAATAAATGTCCGGAAAGTGGGCTCTCAAACGTCTTTATAAGGAAGGCCTGAAAAAGAACCTCTTGCCCTGTCCGCTTGATTGCGTTGGATGGGTAAGCAAGCCTCTGCCTTCTTGACCACTATTACTTTTTTGATCACCTGCCAGGCATGATGCGGCGGGTGCAGATCTACGGTTTTAACGGAATTATTTATGAAGTCCAAAGCAGTGAAGCGCCGCTGGGCGTTGGCCCTGGTGGCGGTGCTGGTACTGGGGGCGCTGGCCGCACAGGCCGGGCGTTCTTCAGAGCAGTTTGAAACGGTGGTTGTGGAACAAAGCGATATACGCGCTACCGTTGCTGCGGTGGGGACTTTGAAGCCCAGTCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTTGCTGCCGGATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //