Array 1 56586-58637 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKDA01000024.1 Lactiplantibacillus plantarum strain RI-191 20150702.X-R191_S9_R1_001__paired__contig_24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 56586 28 100.0 34 ............................ TCATTTTCTGTTCGAAACTGACTCAACCATTGGC 56648 28 100.0 33 ............................ CCTTTTTGAGTGCTTCTCGTTTTCTTGCCTTTA 56709 28 100.0 33 ............................ CAAGCAGAGTGGACTAAATTGTGGCAGAGAGCC 56770 28 100.0 33 ............................ TGAGCGAAAAGATATTTACAGGGGTTAAAAAAT 56831 28 100.0 36 ............................ TAATAAAGGCGCTAAATCAATCAGAATTAGCGCCCC 56895 28 100.0 33 ............................ TACATTGGGACGATTGTTGAACGGATCATTGTA 56956 28 100.0 33 ............................ CAAATCGAACTGACCGAACAGCTGACACAAATC 57017 28 100.0 34 ............................ ATGGATATAAAAAGACATACCAATCTTTTAAGCT 57079 28 100.0 34 ............................ TCTTTCCACTCATCAGGCGTTCCTTGAACAATGG 57141 28 100.0 34 ............................ ACATCATCGACTACATGGAAGATGACGGTTTTAC 57203 28 100.0 33 ............................ TACTAAAACTATATAAACACTCTAACAAAGATA 57264 28 100.0 34 ............................ CATGGTGCATGTGCAAGCGGTAAAAGCTAATAGG 57326 28 100.0 33 ............................ CAGGATTTAGCATTTGAGCGCCATTATCATTAC 57387 28 100.0 34 ............................ TATACAAAACCAAATAAAGTTGCCGCTAGGTAAG 57449 28 100.0 33 ............................ CGAGATACGGCTAGCATACGCCTGCGTCTTGCC 57510 28 100.0 33 ............................ TTGTTGACGACTTAACCGTTGTTGCAGTTCCTG 57571 28 100.0 33 ............................ TCTTGCGAAAACGCAAAACTTCGCCACAACCCC 57632 28 100.0 33 ............................ TTTAGCGAGTGAACGAAGTGAACGCTGCAAGCA 57693 28 100.0 33 ............................ CAAAATCAAGCCCAACTAAAATTATTTCTAGTG 57754 28 100.0 34 ............................ CATTAACTAAAAAGGCAGAAGAAGCTGGCTGGTA 57816 28 100.0 32 ............................ TTCGTCGTTTTCGGTGGTTTTGGCGGTTATAA 57876 28 100.0 33 ............................ CGTAACGGTCAATATCAAAATCATTGATATACG 57937 28 100.0 33 ............................ CATTACCACATTTTTGTTCACAATAAAAAAGCA 57998 28 100.0 34 ............................ ACTGCCGTCAGTCAACGGTAAATCGAATTAAAGG 58060 28 100.0 33 ............................ TCATTACCAAGCTTGATCGTTTCGCCAGAAACA 58121 28 100.0 33 ............................ CTTTGATGTCACGTTTAAATAGGTCTTGAATTA 58182 28 100.0 33 ............................ TAAAGGATTAGTGCCTTATACTGGTCTAAGGAG 58243 28 100.0 33 ............................ TAAAATAAAAATATCAAGTACAAAAGTCAGCGA 58304 28 100.0 33 ............................ TTAAAGACTAAACCTATTTTGTCTTGGTGCTGA 58365 28 100.0 33 ............................ TATGCGTATAAATGTAACGTATGTATGAAGATA 58426 28 100.0 34 ............................ CTTATCAGCATAAATCATAAAAGAATCCCCTCGC 58488 28 100.0 33 ............................ CCATGTTCCGCTTGTTAAAAGGCTATCGCACCA 58549 28 100.0 33 ............................ TTAGAAACGCAGGAAATTATAAATAGCCGTTAA 58610 28 78.6 0 ..............T...A..T.T..TT | ========== ====== ====== ====== ============================ ==================================== ================== 34 28 99.4 33 GTATTCCCCGCACACGCGGGGGTGATCC # Left flank : GTTTCTACAGATAAAATAATAGCGATTGGTGCTGTCAAATCTTACGGTAGTAATGTTGAAAATTTTTGTCAACTAATTAACACTGATCAAAAAATTCCGACAGCAGTAATCAAGTTAACTGGTTTAACCTCAGAAAAGTTGACTTCCAAAGGCGCTTCTTTAGAAAATGCCTTAAGTGAATTTCAAAAGTTCATTAGTGATTTGCCTTTAGTTGGATACAATATTCATTTCGATGAAATTTTTTTAACGGCAAGCTTTCGAAAAACTAGGTTGGCAAGTTTGGTCAATAATTTTTATGATTTGATGCCAGCCGTTAAAAATAATAATCGGTTTTTAGATAATTACCGCTTAAAAACAGTTTTGGAAACGTATAATATTAAAAACGAAAATTTCCATAATGCGTTGGCAGATGCACAAGCGACTTGTTATTTAGCAGAGCAACTCATAAAAAAAGGAGCTTTTAAATTTTAAGAATGTTGGCATGATGGGATTTGTTTAGT # Right flank : TTCATTAGGGACTCCTCGAAAGGGTCATTAGAAAAGCCCTGCATTAAAAGATAGTCAATTTTTGGACTTTACTTTGTCGTAATTGGTGATGGTAATCTTGAGTGAGTTAGGTAGTTGCTTTTTATATACATTTATCAAGTGAATGCATCACGGATTTCAGAATTAGCTCATCACATTATTTATATTGTTTAAGGTAGATTGCAAATTTAATCCGAATTTTTTGACAAATTGGTCAACATAACCTGGTAAGGTGTTTGCCAGTTAAGCACTTTAAGGGGACGCTGGTTAATTTCCAGTAACGTCGTCGTTAAATCTTGAGCACTAATGTGCTCAAAACAAGTCCCCTTAGGATAAAAATAACGTAAGTTCCGATTAAATCGTTCATTACTGCCGCGTTCAGCTGGCGTATAAGCATGGCAGTAATAGGTCTTAATACCGTATTGTGATTCAAGTGATACTAGACCGCTAAACTCAGTGCCGCGATCGACAGTAAAGCTGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //