Array 1 3100-1606 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXUX01000007.1 Pseudomonas aeruginosa strain MRSN19711 MRSN19711_contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3099 29 100.0 32 ............................. TCTATTCTCGACTTCCAGCGTTCTTACCGTGC 3038 29 100.0 32 ............................. TCACAGAGGCAATGGTAACAGCATTTGCTGAT 2977 29 100.0 32 ............................. CCTGTGCGCTCGCAGTAGAGAAGCCTGTGCTC 2916 29 100.0 32 ............................. AGCGTTTGGCAGTGCTAGACGCTATGAAAGGT 2855 29 100.0 32 ............................. GGATATCGCGCCTTATGTGATATACCAGGCCA 2794 29 100.0 32 ............................. ACCTTTCCGACGACGCACTGCGCGTTGATATG 2733 29 100.0 32 ............................. CTGACGCGGTGCGGTAGTAGCGGAGGCCGGCG 2672 29 100.0 32 ............................. GCATCACGTTCTTTCTTGTCGCTGTACCCATT 2611 29 100.0 32 ............................. TCGGCGCACGCCCGGCGAGTGTGGGAGATGCT 2550 29 100.0 32 ............................. CAGCGCCAGCCCCTCTCCGTAACATCTGCTAC 2489 29 100.0 32 ............................. AATGCCATCTACGGTTAGGCATTTGTGGCTTG 2428 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 2366 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 2305 29 100.0 32 ............................. GTGTAGCGGAACCGGGCGGCGCCGCCGGCGAG 2244 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 2183 29 100.0 32 ............................. ACAATCGTCAAAGAGATTTCGGTCTATGTCAC 2122 29 100.0 32 ............................. ACAACGCAGATCGGCGGCCACATCTTTTTCAA 2061 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 2000 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 1939 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 1878 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 1817 29 96.6 32 ...........A................. ATGTAGATGTTACGCGGTCCCGCGGTGCTGAG 1756 29 96.6 32 ...........A................. GTGATCCGCTGATAGTCGCCGTGCCCCAGGCC 1695 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 1634 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.0 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCTGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGATAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13460-12272 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXUX01000007.1 Pseudomonas aeruginosa strain MRSN19711 MRSN19711_contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13459 29 100.0 32 ............................. GCGTCAACGAAGGGTGATGCAACCACCTTTTC 13398 29 100.0 32 ............................. GCGTGAAGATTCGCAAGGACGAGGATGACGAC 13337 29 100.0 32 ............................. TGCTTTATGGTAACACTTGGCTCCTTGATCCA 13276 29 100.0 32 ............................. ATAAGTATCACATGCGCCAATAGATAAAAATG 13215 29 100.0 32 ............................. GGTGTCGTCATGCCAGCGCACTACATACCCCG 13154 29 100.0 32 ............................. GTGGAAAAGATCAAGGCGCCTGGGATTACTGA 13093 29 100.0 32 ............................. AGCCCGCTCCGCCAACACCTTCAGCCTGTTGA 13032 29 100.0 32 ............................. CGTGTTCAGGCCAAGCGCACGGCAAAGGACAT 12971 29 100.0 32 ............................. GCAGAGCGGATTGCTGCCCGCTTTGTCGGCAC 12910 29 100.0 32 ............................. GCGTACATGACTGAGGGAGAGTCCACGGACCT 12849 29 100.0 32 ............................. TCATATAGCTTGTATTTTTCCTTGCTATGAGA 12788 29 100.0 32 ............................. GCGTTCATTTCCCAGGACGTGGACCAGCTGCG 12727 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 12666 29 100.0 32 ............................. TAGGTGTGCTGGGCGTAGTCGGTGGAGTTCTG 12605 29 100.0 32 ............................. TTCATGAACGGCAGAACGTTGAGCGCCGATTT 12544 29 100.0 32 ............................. GTTGTTCTAGAGTCCGTTCAGGAGATGCTTCT 12483 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 12422 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 12361 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 12300 28 79.3 0 A..........A..C.....-..A....T | C [12291] ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.5 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGAATGGTCGAGGGGGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTAGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //