Array 1 955246-955874 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP021641.1 Alcaligenes faecalis strain JQ135 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	============================	=================================	==================
    955246	    28	 100.0	    32	............................	TTTGAGAACTACACGCGCACGGCGCAAGTCTT 	
    955306	    28	 100.0	    32	............................	ATACCGGCTGCGGCAAACAGTTGCATGGCTGC 	
    955366	    28	  96.4	    32	............A...............	TTCGCGCATGGCTTTCTCTAGCACCGCAAAAT 	
    955426	    28	 100.0	    32	............................	ACATCGTAGTAGTAGAACGTCCGGCCTGAGCG 	
    955486	    28	 100.0	    32	............................	ATTAGTAATAGGCACGGACTTGTCTCACGCTA 	
    955546	    28	 100.0	    32	............................	AATGTGATCGGTGGTTCTGATTAATCGGGGCG 	
    955606	    28	 100.0	    32	............................	ATCCCCGCATTTTCAGTTTCACGACCGATTTT 	
    955666	    28	 100.0	    33	............................	TGTCGTAGCGAACTGAACAAGCGCATCCTCCAT	
    955727	    28	 100.0	    32	............................	GAAAACACCAATGTCTACGTCTGAACGTTACA 	
    955787	    28	  92.9	    32	....................T.C.....	AAGTATGGGCTGTGCTTTTTGCTAGGCGTTAA 	
    955847	    28	  67.9	     0	..G..GC..GTC...A....T.G.....	|                                	
==========	======	======	======	============================	=================================	==================
        11	    28	  96.1	    32	GTTTGCTGCCGAGTAGGCAGCTTAGAAA	                                 	       

# Left flank :   ACACTTAAATCGGGATGCCGCAGGGCGGCTTGGACATCGCCGTGCCTGTGGACCAGCCACGCCCCACCACAGAAATCCGCATCCCACACCAAAGGTGGCCCCTGGCGAAGGCGGGCATAAGCCGGATAGGGAGACGCAAGATTGAAATCGCCAAACATGACACTGTTTCCTGAAGATCAAAGCCAGCGCAGGCTAGCACTTGAGCCGGGAAGAGGCAGTCAGGAGATTGTTTCTATTAATTCTTTCAGGGTGTTTTGAGCTAATTAATGAGTTATTTGCCGTTTATGACTACTGTTAACTGTTTTTGTGTGACTGTTTTTTACAATAAAATTGATGAGCGAATTCGAGGTGATGGTCTTTTCTTTGCAGAAACCCTTTTTTTCTATGATTTAAAATTTTGTTTAAAATCAGATGCTTATGGGGTGGTGTGAAAAAAGGGTTTTAGTCGCAAAAAAAGCCATAAGATAGAGCCTGATTAGCATTCAGGGATGAACGCTCTA
# Right flank :  AAGCTTCTGGGTTTGTAGCGTGTGCAGATAAGGTTTGCTGCGATAGAGGCCGCTGAAAAGGTTTAAATGTCGGATGCCCAGCTAGCTTTTTGTCGTAGGCCATCGCCTATCCAGTGGCAAGGCCAGTGCTGGTATCGGCCCTGCAGCAATGGCAGGCTAGGACTACCGCCCTAGTCTGCTATTTATTCCAACTAATCACCGGGCATCAGATGCTGCTGGCAGTCCATCATTACTTAGTTTTTCGGTTTTACGCTGCGGCAACTTCCCGTTCAAAATAAAGTACGCCAACAGACCAATCACCAGTCCCCAGAAGGCCCCGCCAATCCCGAATAGCGTGATATTGGCAGCCGAGGCCAGGAATGTAATCAAGGCTGCTTCACGTGATTTGATATCGGCCATGGCCCCCGCCAGGCTGCCACCAATGGTTCCCAGTAGCGCCAAGCCCGCCAGGGTGGTGATGAAGGTTGCGGGGAAGGCCATGAACACGGCGGCCAGCGTCA

# Questionable array : NO	 Score: 6.06
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTGCTGCCGAGTAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [7,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-8.00,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-11] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.55,0   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
//