Array 1 891397-890769 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGAG01000001.1 Candidatus Arthromitus sp. SFB-mouse-NYU SFBNYU_CONTIG01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 891396 32 100.0 34 ................................ CTTTTGTTGAGGGACTCTCTAAACGCTCTTATAC 891330 32 100.0 35 ................................ TAAGTATATTAGACAACCATTTAATTATACAAAAG 891263 32 100.0 33 ................................ AATCTCTGGTTCGTTGAATAATAGTTTTAATAT 891198 32 100.0 33 ................................ ATTAAATAACAGTATTAAGGATGGTTTTTACTC 891133 32 100.0 34 ................................ TTCATCTATACAAGATAAAATTTTATTTTCTATT 891067 32 100.0 36 ................................ ATTAAGAGGTGTCGATGCTTGAGTTAAATAAGATAT 890999 32 100.0 34 ................................ GACACAATTGGAACAGAAACAACACAAGTAAAAA 890933 32 100.0 33 ................................ TTGTGCCAAGTTATAAAACTTTTTAAAAATAAG 890868 32 96.9 35 ...........T.................... GTATAAATCTGCCCTAATTAAAAATCTTATAGTTG 890801 32 96.9 0 ...............................A | G [890771] ========== ====== ====== ====== ================================ ==================================== ================== 10 32 99.4 34 GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Left flank : GAATATCCTCCATATTTAATGAAGTAGTGAGGTGATTCAATGCTTATTTTAGTTACATATGATGTGGGATTGAATTTTGATGATGGCGCAAAAAGACTTAGAAAAGTATCAAAAATTTGTGAGAATTATGGGATTAGAGTTCAAAATTCTGTTTTTGAATGTGTAGTTGATAATTTACAATTTGAGATGCTTAAGTCAGATATAGATAAAGTTATAGATAAAGAACGAGATAGTGTAAGATATTATAATTTAGGTAATTCTGGAAGAAAAAAGGTAATTCATATAGGCAATAAACATTCCATTGATGTTGAAGATGTTATTATAATTTGATTGCGAAGTATAAGCTTACATTAAATTTATAAGTGCTTCGCGAAGCTATATTAATACTTGATTGTAGCAGAATAATTGGTATTGATATTTATAGATAAATTATGTAGAATATTAGTGTTCGCATAAGTAGTATGTCTATTTATGATTATCAGCTATTTTTAAATTTAACG # Right flank : TTAGCTTAAAATAGTTACGAATTATTTGGTATAGATCCGTTGAGATAAACGGTTCTATAGGAGGAATAATATGGATAAAAAAATAAAGTATTATCTTGATAGAGGCATGGATTATGATATGGCTAAATATTTTGCAACAGCTGAAAGAACAATTATAGAAGTTATTCCAAATAATGATTATACATTGACTCTTAAATTTGATAATGATGAGATACGGAAATATGATTGCAATGATTTAATAGAAAAAGGAACTGTATTTGAATTTTTAAGTGATTATGATAACTTTAAAAGAGTATATCTGGATGAAAGTAACGTAGTATCTTGGGATAAAGATCCAAATATTGATAGTAATTTAAATTGGAGTAATAAAGTTGATTTAAGTTCTGACACTTTGTATGTTAAAAGTATTCCTCAAGATCTGGGCAAAATGAAATTGTAGACTATTTTTATAATCAGTTATACTTTGAACTCTGAAAATTATTTGGAAATGTAAATAGTAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 67343-67049 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGAG01000003.1 Candidatus Arthromitus sp. SFB-mouse-NYU SFBNYU_CONTIG02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 67342 32 100.0 33 ................................ ATCATCTATTTTTAAAACAACAACAGATCCCAT 67277 32 100.0 33 ................................ CACCGTGGTGTTTAATGCTTTTGCCATTGCTAT 67212 32 100.0 35 ................................ TTTTCAATATTATTATCCATATCTAAATTATAGTA 67145 32 100.0 33 ................................ AGTCCTTTCTTATTTGTGAATTATTTGATATAA 67080 32 93.8 0 .............................GT. | ========== ====== ====== ====== ================================ =================================== ================== 5 32 98.8 34 GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Left flank : CCATCTTATAGATATTCATCAAGAGTTTTAAATTTTATCGTAGGATTGATACAAAAAAATCCTAACAATATTAAAGAAGTCTTAAAGAATAAAATAAAAAAATAAGCTAACCCCAGGGGCAAAGGAATTCTTGGTTTAATTTATTAAATTAAACCTACTCCTATTTAGGAACCCAGCCTTATCCATCCCAAGTTAGCTTACATTTATATAATATGTACATATCGTGTATATTATTCATATACACTTACATTGTACAATAAGTAATTTATAAAATCAATATTTTGTAGGTAAAAATCTGTTTAACTAGGCTTATTTAAGCTGGTTATTTTACTCGGAAATATAAGTTTACATAGAATTTTTAGATGTTTTGCGAAGCTATATTAATACTCGATTGTAGTAGAATAATTGGTATTGCTATTCATAGATGAATTATGTAGAATATTAGTGTTCGCAAAAATAGTGTGTCTATTTATGATTAGCAGCTGTTTTTAAATTTAACG # Right flank : TGTTAGATAAATAATAAACCGCTTGATTAATTGTCAAGCGGTTTATTTATATTTTAATCGAAATAACTTGAATCAAACGTTATATAAACATAGTTATAAGTTTTATCGCTTTTATTTAAATGATAAATTTCAACTTCTTCAACAGCATCAGATATATTTAAAAATTTTAGGTACTTGTTATTTTTTTGTTCAGCAGGTTTTATGTTCGATTTAACATCCATTCCGAATTGCTTAAAAATATCTAAATAATTATTTTCGAATTTAAACGTATTTGTCTCATTTGGGAATGCATGGATTTTAACGACAATATCTTCAAATGTTGTAATTTCTAAATATAAATTATCTATAAAATATGTATGATTTGTTAGTCTAAAATCACCTTTACTTGTTTTGTTTGTCCATTCATCTGCATATTTAGGTTCACCTAATTTTTGGTATAATTGATCTTTCGTAATTTTAGCATATTCTGGGGCATTAAAAATAACAGCTACTTCCTTGTT # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 69543-69114 **** Predicted by CRISPRDetect 2.4 *** >NZ_AGAG01000003.1 Candidatus Arthromitus sp. SFB-mouse-NYU SFBNYU_CONTIG02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 69542 32 100.0 34 ................................ ATCAATATATAAATTTATATTTTTATAGCCATAG 69476 32 100.0 34 ................................ ATAAAAGAACTATCTAATTTATTAAAAAAATAAG 69410 32 100.0 34 ................................ ATTAAGTCCAAATTTTAAACTTATAAGATTTCCT 69344 32 100.0 34 ................................ CAGCCTGTTCGGCAAAGGCTAAATGACGTTATGA 69278 32 100.0 34 ................................ CTCAAGTTTAACAACACTATAATTGCGGTCATAT 69212 32 100.0 35 ................................ GTAACGTTGATATGATCGTGCTCTTACATCGATAT 69145 32 90.6 0 .............T................GG | ========== ====== ====== ====== ================================ =================================== ================== 7 32 98.7 34 GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Left flank : TACGTTATTGGATACGGATGATAAAGAAAAAGAAATAAACTTGATAAAATATTTGAATAAAGAAATGTTTAAAGAGCATCATCTTTATGATCATATAGTACCTATTTATAATACTCCTAATTTAGAAAGTGTTTTTGAAGAAATTGGTCATGTATTTAAGAATAAAGGCGAGGCAAGAAAAAGAGAGTATAAAGATTTATTGAAACCATATCCAACCCCTAAACTTGCTCGGAATTATTTAAAAGATTTATCGGGAAAATTTGAAAAGAGCAAAAACACTAATCTTAATCATGTTATTAATTTTCTCCTTAATATATAACCCTTAAATAATTGCGAAATATAAGCTTACATTAAATTTATAAGTGCTTCGCGAAGCTATATTAATACTTGATTGTAGTAGAATACTTGGTATTGCTATTCATAGATGAATTATGTAGAATATTAGTGTTCGCAAAAATAGTATGTCTATTTATGATTAGCAGCTGTTTTTAAATTTAACG # Right flank : TGCCAGACATATAATAAAACCCCACTTGAAATTAATCAGGTGGGGTTTTAAAATCTCCGTCTAAGTTCTACGACCTTTCCGATTATGTGTATGGGTTTATCTGCAATGTCATTTTTATCGTAGTACATTGGTTCGTACTTTGAGTTTAATGATACGAGGCTTATACCGTCCTTGTGTTTTATTATTTTTTTACAAGTGGCTTCATCTCCATTAATGCAAACTATAGCTATATCCCCTGAACTAATGTCATTCTGTTTTTTAACTATCACAATGTCATTTTCATCCATTGTGGGAGACATCGAATCACCCTTGATTACGAGAGCAAAATACTATCCTTGAGATGCAAGTTTAGGTGATATCTCTTCCCATCCGATAATCTCCTCAATCGCCGATATGGGTATACCAGCTATAACAGTACCTAGTATGGGTATTTTAATAGCTTTATTGGATTGATCAGATCTGGAATCATTTATTATATCTCCTTTTTTGATTTAATTTTA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACGCAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.60,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //