Array 1 158-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNYE02000176.1 Streptococcus pneumoniae strain NP7006 isolate 04WB3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================ ================== 157 32 93.8 28 ..................G.......T..... GCCATCCTGTTACCATAGCACCATTGCT 97 32 100.0 28 ................................ GCCAGCCTGTCGCCATATCACCATTAGC 37 32 96.9 0 ...G............................ | ========== ====== ====== ====== ================================ ============================ ================== 3 32 96.9 28 GTTTAGGTAGTACCATGAACCATTGTATTGGA # Left flank : CTTGCTTTCATAGCACCTGATGCTTCAAGATAGTACCAGGTATCTCCATCTTTCACCCAATCTGTTGCCATTGAACCGTTAG # Right flank : AACCAT # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGGTAGTACCATGAACCATTGTATTGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 84-408 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNYE02000056.1 Streptococcus pneumoniae strain NP7006 isolate 04WB3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =================================== ================== 84 25 100.0 35 ......................... TATTGGAGCCAACCTGTTGCCATTGAACCGTTAGC 144 25 100.0 35 ......................... ACTTTAGCCCAACCTGTTGCCATAGCGCCGCTAGC 204 25 84.0 35 ...T..A...........G..A... TATTGGAGCCATCCTGTCGCCATAGCGCCATTGCT 264 25 92.0 35 ..................A..A... TTTTGGAGCCATCCTGTTGCCATAGCACCGTTAGC 324 25 84.0 35 A..T.....A...........A... TTTTGGAGCCAACCTGTTGCCATAGCACCATTGCT 384 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =================================== ================== 6 25 93.3 35 GTTGAGGTAGTACCATGATCCGTTG # Left flank : CTTGCTTTCATAGCACCTGATGCTTCAAGATAGTACCAGGTATCTCCATCTTTCACCCAACCTGTTGCCATTGAACCGTTAGCG # Right flank : TTTTGGAGCCATCCTGTCGCCATTGAACCATCAGTATTGTAGAAGTACCACATACCATTTTCTTGTTTCCAGCCTGTTTTTGGAGTTTCTGGTTTAGGAGCTGGAGCTGGTTTTTCTGCTGGCTTTTCTGGTTTAGGAGCCGGAGCTGGAGCTGGAGCTGGTTTAGGAGCCGGAGCTGGAGCTGGTTTAGGAGCCGGAGCTGGTTTAGGAGCC # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAGGTAGTACCATGATCCGTTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //