Array 1 154996-153258 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXLG01000003.1 Salmonella enterica subsp. houtenae serovar 48:g,z51:- strain 234-85 NODE_3_length_345909_cov_4.40617, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 154995 29 100.0 32 ............................. GAAAGGTTAATTGCCTATGGCTTGATTTTACT 154934 29 100.0 32 ............................. GGTATTTATTATGACTTGTGGCAAGGATTATT 154873 29 100.0 32 ............................. CGCTGGTTAAATGTGATTATGACCCGCGTTTT 154812 29 96.6 32 ............................T TCCAGCAACTTCAGCGTATCGGGGCTGAAGCC 154751 29 100.0 32 ............................. ATAAATTTGGCACCGGGAAAAACGGGTTTACC 154690 29 100.0 32 ............................. CGACTTCATGGATGCGCAAGACAGTGCCATTG 154629 29 100.0 32 ............................. GACGAGGCGGTCGCTCTTGGGGAGGGGTGCGC 154568 29 100.0 32 ............................. AGGGCGCATTGCATGAAAAAACAGATGCCCTA 154507 29 100.0 33 ............................. CGGAAATATGACAATGACCAGCCTTGAAATCGC 154445 29 100.0 32 ............................. GGTTTGCCGAGGTGTGGGAGCAGATAGAGTCG 154384 29 100.0 32 ............................. CGACCTCGCCGCCTCAATCCTCAGGGGCGCGG 154323 29 100.0 32 ............................. CAGCCTCAACGCCGTAACAAAGCTCGGCGGTA 154262 29 100.0 32 ............................. GGGTTTGTGGTCAAGGCAGAAATTCGAGGGCA 154201 29 100.0 32 ............................. AAAAAAATTTCGATGATAAAAATGTCGGATTA 154140 29 100.0 32 ............................. CTGTTGCTCTTGGTGCGACGCTTTCAGAAAAA 154079 29 100.0 32 ............................. TCACCTGGTTTGATGAGGATAAGTTCACAGGG 154018 29 100.0 32 ............................. AGATTATGCCAGGGATATCGCGCCACAAATAG 153957 29 100.0 32 ............................. GGACCCTCATGGCTAAGCAACCGAACGCGGCT 153896 29 100.0 32 ............................. GCTCGGGATAGATTGGCGCTTGCGACAGCGCA 153835 29 100.0 32 ............................. GTTCCGGTAATCAACCTTATCGACTTCAAAGA 153774 29 100.0 32 ............................. ATGCTCAAATCATATAGCATTGAATATGAATG 153713 29 100.0 32 ............................. CACAATCACAAAACCCAATGCAGGGAACGAAA 153652 29 100.0 32 ............................. CCACCCACCAGCCCAGCGCCAAAACCGCCACC 153591 29 100.0 32 ............................. CGTGTAAACCGCCGTGAGCGTGCGCCTCATAA 153530 29 100.0 32 ............................. AGTTGCAGTGGTGTATTAATATTGCAATGTCA 153469 29 100.0 32 ............................. ATTTGAAATATGAACTGGATGAAGAATATCGG 153408 29 100.0 32 ............................. ATGGCGCACATGGCCCGCCAGTAGTCGGCGTA 153347 29 100.0 32 ............................. GATCTGTCCGGTATGGTTATTGTCTGCGGATA 153286 29 89.7 0 ............T..............GT | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGAGGTCCTTGCCGCCGGAGAAATCCAGCCGCCGTCTCCTCCTGAAGATGCGCAGCCCATTGCGATTCCACTTCCTGTTTCTCTGGGAGATTCAGGCCATCGGAGTAGCTAACGATGAGTATGTTGGTTGTTGTGACGGAAAATGTACCGCCACGTCTGCGAGGCAGGCTGGCCGTCTGGTTACTGGAAATTCGCGCTGGTGTTTATGTTGGCGATGTTTCAACAAAGATCCGCGAGATGATATGGCAGCAGATCTCCGTTCTGGCTGAGGGCGGGAATGTTGTGATGGCATGGGCGACGAACACTGAATCAGGGTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTGGATCTTGATGGATTGCGATTAGTGTCTTTTCTGCCTGTTGTAAATCAATAAGTTAGCGATCTTTAAAAATACGGAAAAGTTGGTAGATTTTGGTATGCTAAAAAAAGCCTTTTAATTCAGTTGGGTATATTTAGA # Right flank : TTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //