Array 1 14868-13339 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDWD01000003.1 Acinetobacter sp. C15 contig1077, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14867 28 100.0 32 ............................ ATACCGAATGCACACCAGTCATCACCGATTAC 14807 28 100.0 32 ............................ GAGAACTTAATTTATACGATTGGTCACAATAT 14747 28 100.0 32 ............................ AGAAATGGACCATGAAGCAAGCCTATAAGAGT 14687 28 100.0 32 ............................ TTAAAAGACTAAATGATCCCAAATATGAAGTT 14627 28 100.0 32 ............................ AGAAATCTGATTATTTGTCGTAGTATTTGATT 14567 28 100.0 32 ............................ CTGTTGACCAGATGTTGAAATTCCCACAGCAC 14507 28 96.4 32 ...A........................ ATGAAAAAATTAATCCTATTATTTCTCTTTCT 14447 28 96.4 32 ...A........................ GTCGGAACCTGATTCGGATAATGATATGTTAG 14387 28 100.0 32 ............................ AAGTTCCTGTCCAACCACCTGAATCGGCACAA 14327 28 100.0 32 ............................ CATGAAGCTGACTCGAGTGCAGATGTGCGATC 14267 28 100.0 32 ............................ TAACAGAAATGCAATTGCCCAAAATAGTTTAT 14207 28 100.0 32 ............................ TGCAAAAATAGGGGCATTAATAGAAATTTGAT 14147 28 100.0 32 ............................ GTCAATTTTGAGCTGACGCAATCGCCAGCCAT 14087 28 96.4 32 A........................... TATCTTATTATCAATTAATTTATAAGTTGCCT 14027 28 100.0 32 ............................ TGAATATCCTTAACTAAGTCTGATAATTCTTT 13967 28 100.0 33 ............................ CTTATAAAAACAAGAAGTCAGAAGATGAAATGA 13906 28 100.0 32 ............................ TCAACATTATCTACCCAAGTGGCAAAGGGTAT 13846 28 100.0 32 ............................ AAGGGCATTCACTGCTTCTTGTGGTGTTAGAG 13786 28 100.0 32 ............................ TTCAGGCACTGTGTACTTAATACGCGCATCAT 13726 28 100.0 32 ............................ ATGACATAACTGTCATCTGCTCCTAGTCTTCT 13666 28 100.0 32 ............................ TTCATGCGCACAGTTTCACACCACGCGCCGAA 13606 28 100.0 32 ............................ TCCAGATGGAATTGCTTCAAGGTTTATCGATT 13546 28 96.4 32 ...T........................ TAAAGCCTACGTTGTTCAATGTAGGCTTTTTT 13486 28 100.0 32 ............................ AAGCCAGCATCCAGCATCGAGAGCGATCTGAT 13426 28 92.9 32 ...T........G............... TAAGCGAATCACAGGAAATGGCAATTCTTGTT 13366 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.2 32 GTTCGTCATCGCATAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAGCACTGTATAAAGAATTGGCCAAAGGATTTAATATTGATTTTAAACGAGATGAAGGCAAAAACTCACACGATACTCTTACCGATATCGCGAATAACTACTTAGATCACGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGTATGGGAATTAGTTTTGCATTACCTATCTTGCATGGTAAAAAACGCCGCGGAGGTTTAGTATTTGATCTTGCCGACTTAGTGAAAGATGCTTTTGTGATGCCAACTGCTTTTATATGCGCATCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAACTTATAGAAATATGCCAAGACCAAGATCTTCTAGATTACATGTTTAGCTTCATTACAGACATTTGTAGTAAAATCAAATAAAATCATACAATTAAGTCAAGTGGTTCATAACGAAGTATTTTTACTCATTAAAAGCTTATATAATTGATATTAAGGGTTTTGTTTTGACTTAACTCTA # Right flank : GGCTAAAAATACTCCTCCTCACATCGTATTTTCTTGCACCAAACTATTCATATAAGCCACCGCTGCTGTACGGTTTTCCACACAGAGTTTTTCAAAAATATGTTCAAGATGCTTATTTACAGTTCTTGGGCTGAGCTCTAATATCTCTGCAATATCTTTATTGGTTTTACCCAGTGCCAGCCAATGCGAAACTTCCGCCTCTCGCTGGGTCAGTTGCGGGCAATATTTTAAAATCTCCTCAACGCCCAAAGCCGGAGCAGACATTTTAATTTGTACCAGATAAGTGGCGTGACCCACAGGTTGATCGTGCCATGGCGTAAGTAAAATAAGTTGCAGTTGATGCGATGCACTAGAATAGGTGCAACTCATTTTCTTTTTATTGTCTTTATCGCGTTTAATTTCGGCAAACCACTGCGTTAAACCAGTTTCAAAGCGTTCACGATCTTGCAAATATTGGTTCAGCAAAATATTGGCTTTTTCTGTGGCCCATGCAATTTTCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 88544-87856 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDWD01000003.1 Acinetobacter sp. C15 contig1077, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 88543 28 100.0 32 ............................ TTTAACGTCAACAACCATCCCATCCCATGCAT 88483 28 100.0 32 ............................ TACAGCTTTAAAAGCAACACCAAGGGCATCGG 88423 28 100.0 32 ............................ ATTAATAATTGTTGAAGAAGTATCTGCACCAA 88363 28 96.4 32 ...............A............ ATCACCAAGCAAGGCCCTGTAAATGTTGTTGA 88303 28 100.0 32 ............................ ACGTATACAACGACTTCACTGTCAGTGAAGAT 88243 28 100.0 32 ............................ AGAGCAAAATCCTGCTGCCAACATGGGTGCGG 88183 28 100.0 31 ............................ TCACCAAATCCCGAGCATAAAGAAACCAGAC 88124 28 100.0 32 ............................ TGAGCTGCTCATGGGCCTACGCTCATCTGAGG 88064 28 100.0 32 ............................ GACGTGTGTCGAGCTTCGTGGGCCGTTTGTGA 88004 28 100.0 33 ............................ GCTATCAAAGGCCAAAGCTACAGGCCGATTGGT 87943 28 100.0 32 ............................ ATTTTCCAATTTTAAACTTCAATAAAATGATC 87883 28 89.3 0 .......G.....T..........A... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.8 32 CTTCACTACCGCACAGGTAGCTTAGAAA # Left flank : CCGATATCGGCAGGTGTAAATGCGATTTGACGTTGCAAATTACTGGTTTCAATGGTGTCGGCATCAATCAGCGTGATTTTGCCTACGCCTGCTCGAGCCAGTAGCTCTGCTGTTGTACAACCGATTCCACCCGCGCCTACTATCAAAACATTGGCGAACTTTAGTTTTTCTTGAGCATCTAAATCCCATCCATCGAGTAAAATTTGTCTGCTATATAAATGCATTTCGGCATCATTTAGCTCTAAATCCAGATTGTCCTGATTGTTCACTCGTGATTATCCCAATTTATCAATACCAAATTCATCGCCATGATTATAAAGACAAGCTTGTGTTGTGAGATGTTTTATTTTGACAAAAGTGAACTTTTACTCCAATATTTTACTTACTCTTTAACAGTTAAATAAAATCAAAGACTTAGTTAGAGCTAAAATAAAATAGGTCTTTTTATTTTACTTGCTTTAGTGTATTGTTTTTAATATATATTTTTATATTTTATTACT # Right flank : GTTTGACGACTCAAAATCATCAATATTCAGGTAGGTATTTGATTAAAAATGCATATACTTAAATCAACAACAATAGTTTAGATTTTGGCACTTTTTTCTTATGCTCAAACAGCCCTTCCTCAAAAAGATAATTCAATATGCGCCAGTCATTTTATTTTGCATAGCATTATTTATCATACATAAAGAACTTGAAACCCATGAGTTTTCAGGCTTACTTAAACACTGGAACAATATTCCTTGGTCAATCGCGCTAATGGCATGTGGTTTGACATTAGCCAGCTATCTATTTCTTACACTTTATGATGTTTTGGCTTTAAGGTCATTAGGATATCGCAACATCAAATATAGATATATTCTGTTCACTTCGTTTGTCAGCTTTGCTATCAGTAACAACACTGGGCATGCATGGGCCTCTGGGGGTTCAATCCGCTATCGTTTTTATCAAAAAATGGGCGTTCAGGGCTGGGATATTGCAAAAATCTCGGCTTTTTTAAGTCTGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTACCGCACAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTACCGCACAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //