Array 1 109006-106350 **** Predicted by CRISPRDetect 2.4 *** >NT_187115.1 Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 109005 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 108944 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 108883 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 108822 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 108761 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 108700 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 108639 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 108578 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 108517 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 108456 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 108395 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 108334 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 108273 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 108212 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 108151 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 108090 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 108029 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 107968 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 107907 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 107846 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 107785 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 107724 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 107663 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 107602 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 107541 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 107480 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 107419 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 107358 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 107297 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 107236 29 100.0 34 ............................. GRMWTGWTKCTACGACWACAACCCSGCRGCSGTG 107173 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 107112 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 107051 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 106990 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 106929 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 106868 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 106807 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 106746 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 106685 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 106624 29 100.0 33 ............................. CGGCCTTTGCCCCCAGGARWKCGMTGATGACCA 106562 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 106501 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106440 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 106379 29 93.1 0 A...........T................ | A [106352] ========== ====== ====== ====== ============================= ================================== ================== 44 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 127617-125513 **** Predicted by CRISPRDetect 2.4 *** >NT_187115.1 Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 127616 29 100.0 32 ............................. TCTCCAGCTGATAAGGGGCGATAAGGTGATGA 127555 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 127494 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 127433 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 127372 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 127311 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 127250 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 127189 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 127128 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 127067 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 127006 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 126945 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 126884 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 126823 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 126762 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 126701 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 126640 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 126579 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 126518 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 126457 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 126396 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 126335 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 126273 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 126212 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 126151 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 126090 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 126029 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 125967 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 125906 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 125845 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 125784 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 125723 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 125662 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 125601 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 125540 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //