Array 1 299998-301209 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINRL010000001.1 Lactobacillus johnsonii strain AER105 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 299998 36 100.0 30 .................................... TTCAGCCGTTAGCCTTGAATTCAAGTGGCA 300064 36 100.0 30 .................................... TTAGGCAGTTAATAAAATTGGCAAATACAG 300130 36 100.0 30 .................................... GTGCTTTTTCAAAAATATTAACTTCATCAA 300196 36 100.0 30 .................................... TTTCCAACCACTTTTTTGTTTTGTTATTAT 300262 36 100.0 30 .................................... ATCGTAACAAGAATGATTATCTATTTAGAA 300328 36 100.0 30 .................................... AATTAAGACCCTATCAAACCGATTTAATTA 300394 36 100.0 30 .................................... TTTACTTCGTCCCATTTTGACCATCTAGAG 300460 36 100.0 30 .................................... TAGGACTTGCAGGAATTGTTTTTGGAGCTT 300526 36 100.0 30 .................................... CAGCATTTCAGAAGATTAAGCAGCAATTCT 300592 36 100.0 30 .................................... AAATGGCTTGCTAATGAAAAAAAGCACGTC 300658 36 100.0 30 .................................... AGTAGTAATTTGAACTTCGCCTAAGTAGCT 300724 36 100.0 30 .................................... AAATGGACAAAATTGATTTAAGTTTACCAA 300790 36 100.0 30 .................................... AAAGCCAAAGTTCTAACAAACAAAAATCTA 300856 36 100.0 30 .................................... GTTGGGCACAAATTATGGAAGCTCAAAGCC 300922 36 100.0 30 .................................... CAACGTTGGTTTGGATAAAGCTTACAACAA 300988 36 100.0 30 .................................... CTTCCTCATCTTTCTTAATTACATAGTTAT 301054 36 100.0 30 .................................... ATTCATTGCTTGCCTCAGATGAAGTGTTCG 301120 36 83.3 19 ..........................A.A..GC.GG GCTCAAGACCAAGTAACTA Deletion [301175] 301175 35 72.2 0 ......AC.A.............-..TA....CTCT | ========== ====== ====== ====== ==================================== ============================== ================== 19 36 97.7 29 GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Left flank : CTAAAAATATTTTAGATAAATATATACCTCTTATAATAAAAAAATATATCGAAAATTTAGATGAAGATAATCGAAATAAGATAATAAAAGCATATTATAATTTAGAATCTTTAGTTCAGGATTCGTTATTTTTAGAAGATTTACCGCTAGAACTTGATTTTAGTGAAGATTTAAAGAAGTTTCTAAAATTAGAAAATTTTCATTTAGATTCTAAGTTTTTAAAAGAGCCCTATGCTATAATTGAATCGATCTTAAGAATCTATCAAACATGTAATTTGAAGACTGTGCCAGTTGTCTGTAATGTCGCTCATTATTTAGATAGAACACAGTTAAACATGTTGAACAATTTACTAAAGTCAATGAAATTGAAAATGATTTTAATAGAATTCACATCTAAGGATGTTCTGGTTTATCCGAAAGATGCTGATTACTTCTACATTGATCAGGACCTTGTTGATTGGTACTGACAGCTATCATTAAAAGATAATTATAAATTATCG # Right flank : TTTATAAAAATCATTAGTATTAATTAAAAATATTAATGGCTTTTTGTTTTGTTGAATTTGGGAATCTTATCTAAATTATCATTTTCTTTTGCTTCTAAGTAATTAAAATATTCTTCAGAGAACTTACCGTCTGTTAGCCAGACCATGTTATCGTTCCTTTTGGTTTTATTTTTGTTCAAAATACACACCTTCAATAATTTAAATATTGTTAATTAAAATCTCTAGTTTTAAAAGGATAATAGAACAGAAAAAATGAGAAATCTAAGATTTAAAAAGGATGATTTTCTATTCATTAGAACAACATATCCTAGTTTATTTATTAAATTTAAGAATAGTTATAAAGAAAATGGAATTGTTAATGTACCTATGCAAAATGAAAGGGATTATGATTATTACTTTGATATAGTTGGGGATTATATAGCTACCTCATTGAATGAAGCGGGGGAATTAAATGAGGACGGTCTAAGACTTGAGGCTGCGTGGGATTATGCAGACTGGTC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //