Array 1 299998-301209 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JAINRL010000001.1 Lactobacillus johnsonii strain AER105 contig00001, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    299998	    36	 100.0	    30	....................................	TTCAGCCGTTAGCCTTGAATTCAAGTGGCA	
    300064	    36	 100.0	    30	....................................	TTAGGCAGTTAATAAAATTGGCAAATACAG	
    300130	    36	 100.0	    30	....................................	GTGCTTTTTCAAAAATATTAACTTCATCAA	
    300196	    36	 100.0	    30	....................................	TTTCCAACCACTTTTTTGTTTTGTTATTAT	
    300262	    36	 100.0	    30	....................................	ATCGTAACAAGAATGATTATCTATTTAGAA	
    300328	    36	 100.0	    30	....................................	AATTAAGACCCTATCAAACCGATTTAATTA	
    300394	    36	 100.0	    30	....................................	TTTACTTCGTCCCATTTTGACCATCTAGAG	
    300460	    36	 100.0	    30	....................................	TAGGACTTGCAGGAATTGTTTTTGGAGCTT	
    300526	    36	 100.0	    30	....................................	CAGCATTTCAGAAGATTAAGCAGCAATTCT	
    300592	    36	 100.0	    30	....................................	AAATGGCTTGCTAATGAAAAAAAGCACGTC	
    300658	    36	 100.0	    30	....................................	AGTAGTAATTTGAACTTCGCCTAAGTAGCT	
    300724	    36	 100.0	    30	....................................	AAATGGACAAAATTGATTTAAGTTTACCAA	
    300790	    36	 100.0	    30	....................................	AAAGCCAAAGTTCTAACAAACAAAAATCTA	
    300856	    36	 100.0	    30	....................................	GTTGGGCACAAATTATGGAAGCTCAAAGCC	
    300922	    36	 100.0	    30	....................................	CAACGTTGGTTTGGATAAAGCTTACAACAA	
    300988	    36	 100.0	    30	....................................	CTTCCTCATCTTTCTTAATTACATAGTTAT	
    301054	    36	 100.0	    30	....................................	ATTCATTGCTTGCCTCAGATGAAGTGTTCG	
    301120	    36	  83.3	    19	..........................A.A..GC.GG	GCTCAAGACCAAGTAACTA           	Deletion [301175]
    301175	    35	  72.2	     0	......AC.A.............-..TA....CTCT	|                             	
==========	======	======	======	====================================	==============================	==================
        19	    36	  97.7	    29	GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC	                              	       

# Left flank :   CTAAAAATATTTTAGATAAATATATACCTCTTATAATAAAAAAATATATCGAAAATTTAGATGAAGATAATCGAAATAAGATAATAAAAGCATATTATAATTTAGAATCTTTAGTTCAGGATTCGTTATTTTTAGAAGATTTACCGCTAGAACTTGATTTTAGTGAAGATTTAAAGAAGTTTCTAAAATTAGAAAATTTTCATTTAGATTCTAAGTTTTTAAAAGAGCCCTATGCTATAATTGAATCGATCTTAAGAATCTATCAAACATGTAATTTGAAGACTGTGCCAGTTGTCTGTAATGTCGCTCATTATTTAGATAGAACACAGTTAAACATGTTGAACAATTTACTAAAGTCAATGAAATTGAAAATGATTTTAATAGAATTCACATCTAAGGATGTTCTGGTTTATCCGAAAGATGCTGATTACTTCTACATTGATCAGGACCTTGTTGATTGGTACTGACAGCTATCATTAAAAGATAATTATAAATTATCG
# Right flank :  TTTATAAAAATCATTAGTATTAATTAAAAATATTAATGGCTTTTTGTTTTGTTGAATTTGGGAATCTTATCTAAATTATCATTTTCTTTTGCTTCTAAGTAATTAAAATATTCTTCAGAGAACTTACCGTCTGTTAGCCAGACCATGTTATCGTTCCTTTTGGTTTTATTTTTGTTCAAAATACACACCTTCAATAATTTAAATATTGTTAATTAAAATCTCTAGTTTTAAAAGGATAATAGAACAGAAAAAATGAGAAATCTAAGATTTAAAAAGGATGATTTTCTATTCATTAGAACAACATATCCTAGTTTATTTATTAAATTTAAGAATAGTTATAAAGAAAATGGAATTGTTAATGTACCTATGCAAAATGAAAGGGATTATGATTATTACTTTGATATAGTTGGGGATTATATAGCTACCTCATTGAATGAAGCGGGGGAATTAAATGAGGACGGTCTAAGACTTGAGGCTGCGTGGGATTATGCAGACTGGTC

# Questionable array : NO	 Score: 6.10
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGATGGTTGTTAGATCAATAAGGTTTAGATC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.90,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-16] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.27   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
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