Array 1 614216-610746 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045482.1 Acidianus ambivalens strain LEI 10 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 614215 24 100.0 34 ........................ TTTAGGAGTGAGCGTAACCCCACGAGAGGAAAAA 614157 24 100.0 34 ........................ TTAAACAGTGGAGTGGATGAGGCGTGTATAGCAA 614099 24 100.0 35 ........................ TAGAACCTTGCAGAATTCCCCCTTTCGCATGATGC 614040 24 100.0 34 ........................ AAAAAACCATCCAAGCCTTTGACCAAATGATTAA 613982 24 100.0 33 ........................ GTGGAGAACCGCCTGGTAGTGGAGATGTTGGGT 613925 24 100.0 35 ........................ AGTTTTGAATCTAGAGAGAAAGAACAAGATTAAGA 613866 24 100.0 36 ........................ GCTCATAGCCTGCACCTGCACTAGCTTTCAGTAAAT 613806 24 100.0 35 ........................ AAAATAGTAGGAATGCTAACCCCAATTCCAGCTTA 613747 24 100.0 34 ........................ TACTCGTAACCGAACTATAAAGGGAAGAAGACGG 613689 24 100.0 37 ........................ GTATGACAAAATCCCTTCTAATGCACTATAAAAACGA 613628 24 100.0 34 ........................ CCATTTTTTATCCCCAATAAATACTATGATTTCA 613570 24 100.0 35 ........................ ATATCTTAAACATCTCCACAAATCTTTTATCTAGT 613511 24 100.0 35 ........................ CCCCCATCAAGAGAAATAGAAAAAGTAATATTTGA 613452 24 100.0 33 ........................ TTTTTCCCTGAAGTTGTAGTTTTCTCTACCACC 613395 24 100.0 33 ........................ ACGGATTTGTTACACCAAGTGCTACCATTTCTG 613338 24 100.0 34 ........................ TTCAAAGAAAAAAGGCTTTTTCACCAAAAAGTGA 613280 24 100.0 35 ........................ AATTGGGGGTATGTGCACATGTGGTGGAATGATTT 613221 24 100.0 35 ........................ GGATAATATACTCCAGGGAATTTTGAGAAGTAAGT 613162 24 100.0 30 ........................ AAGGTCTAGCTACTGCTTATAAACTATCAA 613108 24 100.0 37 ........................ TGATGAGAAAGTAATTGTAGCGTTGTAGACAGAAAAA 613047 24 100.0 36 ........................ ATATGATTATTGGAGATTACTTAATTGTGGTAGATG 612987 24 100.0 34 ........................ TTTTTGACGCGACGAATTTGCGGAAGTATTTTGG 612929 24 100.0 34 ........................ AGCTTTAGCATCTTCTCGGCATAATTCTTGTCTC 612871 24 100.0 37 ........................ AAATGAAAGTCGAAAATAAGTCTCAAAAAACACAAAT 612810 24 100.0 35 ........................ GGATATACCTCATGGATTGGTATTTTCAAAAAGTA 612751 24 100.0 35 ........................ AGAATTCCACGCTCTTTTGCTGTATAAGCTCCTTT 612692 24 100.0 34 ........................ TGGGGAAAAAGATGGAGGTAGAGGTAAAAGAAAT 612634 24 100.0 35 ........................ TGCAAACGTTACAATTATAACGCCCATTTACAAAC 612575 24 100.0 36 ........................ GAAATATGTTTATATCTTCTCGTTATGTACATATCT 612515 24 100.0 34 ........................ TACCAGGCTATTATGCCGTAGGAGTCTGGTTTGA 612457 24 100.0 34 ........................ CGAAAGTGCTTGGTGACAAATTTGCATAAGAGAA 612399 24 100.0 36 ........................ ACCCACGTGTTATCGATTTGGTAAAGAGAATCGCTG 612339 24 100.0 35 ........................ TACTGTTGAAGCCCCTATTCATTCTCCTTATTATT 612280 24 100.0 34 ........................ ACAAATTAATCAGTCAACAGTGAGGTGATATAAA 612222 24 100.0 35 ........................ GTGAGAAGGAAGAAGATAAGCATGGTATCGAATTC 612163 24 100.0 35 ........................ GGATATTCGTAAGTCACAGTAGGGCGTTTACCCAA 612104 24 100.0 37 ........................ AAGCTTACGCGAGGAAGAGCGATGTAATGAGTTTGAA 612043 24 100.0 32 ........................ AACTACGACTCTAACGGTGGTGCAGAGAATAA 611987 24 100.0 34 ........................ TAAAAACACGACATATATTGAGGCGGGAGTTAAG 611929 24 100.0 34 ........................ AATAGACATGTAGGAATTATCTTAGTATTTGTCA 611871 24 100.0 35 ........................ AAAAATCTTAAGAAAAATACTAATAGACGACATAA 611812 24 100.0 35 ........................ TTTTAGGTACAACCCCCTCGTTTGGATGATCACTG 611753 24 100.0 34 ........................ CCACTGTTATAGCCCGCCTTCAGAGGGGCTAAAT 611695 24 100.0 30 ........................ CTGTAGAAGACACTGTTTCCGTTTCCGAAA 611641 24 100.0 34 ........................ GACAGAATCCACGCAAACAAGAGCGGTAACATAT 611583 24 100.0 35 ........................ CACTATCAAGTCGTTTAACACACTGGCGTAAACAG 611524 24 100.0 35 ........................ TCATAATTTTTTATTCATCATCCTTCTCAATTTTG 611465 24 100.0 34 ........................ TACTATCGACACCGTTTGAAGTACAGTACAAGGA 611407 24 100.0 34 ........................ TCCTAATGAAGTAAAGGTGATATTTTTTGGAAGG 611349 24 100.0 34 ........................ TTTCTGAAGTTAAGCAAAGAGAAGCTTTAAAGAG 611291 24 100.0 35 ........................ CAATTTGATCAAATAAGAGAATATGCAAAGAGGCA 611232 24 100.0 34 ........................ AGCCTGGATAACAGTTCATCTCCAATTGAGTTGA 611174 24 100.0 34 ........................ CATACTCTCCTTTGATGTGGACAAGAAGCGTATT 611116 24 100.0 34 ........................ AATATGAGAAGTGCTGCAGAGAAGAGGAAAATGT 611058 24 100.0 34 ........................ AGTAATTTCTATCAGTTAACTGGGGAGTTTTTAC 611000 24 100.0 34 ........................ TATTAAAGGGCAAACTTAGAAGAACTTTGAATAG 610942 24 100.0 34 ........................ TTGATATTCGTTTGTGGTAGGATAATTGTATTCA 610884 24 100.0 33 ........................ GTGGTTGAGCATTGATTTCTCGGACTTGGGCTT 610827 24 100.0 34 ........................ ATAGAACTTCTAAACTCTTTTTCTTCGCTTCCTG 610769 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 60 24 100.0 34 CTTTCAGTTCTTCCTTATTTCAAC # Left flank : CCCCATACATGGATTATCCCGACCTTCTAAAATCCATTCACTTAGTTTTTCTGAAAGAATTGAGGCTGATTCTCCTAAAGTTTACATCTGCCTTCCTTTACGGCTTGTTGATATTCTTGAGTATTAAACTTCAAAGGACTTTAACAACTTCCTTGATTGAACTCCTTCATTTCAGTCACTTTTCCAACCCTTTCTCTTAAATACTAAGGAAGATGAGTCAATTACTCTCACGATCTTCTCTTACGGATTTTATTGAGAAACCTTCTTCACTAGGTTTAACGTCCTTAAATTCCTCAAAAAGAGAAAATAACTGCAACTTTCTTGTAGTAACATTTTTTTTCCTGATGAAGAGGTTGATATTATTAGACCAATAATGATAGAGTGCATAGGCCATGAAAATCATTGCCATATCCATTGTCATATAAGCAATATATTAGAAAATTATTTTGATGTAGATCTAACAGTGTAATAACTATGTTACTAATCTGAGTATAAATCGT # Right flank : CGTTCGTCACTTTTCACGATTTTTTCACGTGCTTTTAGGGGGTTGTGTAGATTATCTTATTTACTCCTTTATAATAAACCTTACTTTTCATCAAAAACTAGGGAAGGCAATGTAGAAAAAGTTTATTTCACGTTATTTTGAAAGTAACTTTTCAACACAAAAGTTTATAAAGAGTATTTATACCCCGAAAAAAGACGTCAAAAACTCTACCTAAAAATCTACACGAAAAAATCTCCCACAATAGAAATAATTCCTAACTCCCCTGTTTTTAGAGAAAATTGAAAGGGGATAAATTGACAAAGTAGATAGAGAAATACTAGAGAAGAAAAAGAAGAGAAAATTGAAAGAAAGAAAAGTCAAAAGAAGGTGAATTGGAATAATCTACATTTATTGTTAAATAAGACATAATTCCTAATTCCCCTGCTCTTCACGAACAATCGAATGAAAGAAATCTAGGAAAATGACTAGAAGTAGATAGAGAAATTCATCCCCTCACTAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGTTCTTCCTTATTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 1537169-1537319 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045482.1 Acidianus ambivalens strain LEI 10 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================== ================== 1537169 23 100.0 42 ....................... CATCACTCTTAGAAGCAGTTAAAATACCTAAGAACTTTATCT 1537234 23 100.0 40 ....................... TCTAAATTAGAAAAGTACAGAATTCCAACCAATGATAACT 1537297 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ========================================== ================== 3 23 100.0 42 TTCAATCCCTTTTGGGATGCAAC # Left flank : CAAAATAGCCTGAATCTAATAATTTCTTAACCAACTCCTTAGCTTTACTTATTCCGTATTTCCTGCATATTACGTAAGTTATTTCAATTAATGTTAAGTTAGTAATTACAGGCTTTAATTTTCCATCCTTGACCAATTTAAGAAATTTTTCACCCAACTCAGATCCTTCTAAAACCTCAACTATTAATCCGGTATCAACAACTACTCTCATCTTCTCTTCTCGACCTCTCAAATTCTTCCCTTATACCTTTTGCGGAACCCAAGAGGGAAAAAAGTAACTGCGGGTCCTTCTTTAAGTTCTTATTCTCTTCATAAAAGGATATTAAATATTCTACAGTATCGTTCAGACTAACCCTCTTTCCCTTGTTTAACTGCAGCTCAGCTGAAATCTTAACCAATTTCTCCTTAACTTCCTTGCTAACCCTTATAATTTCACTCATAAGATAAACTCTACGTATATGTATATAAAGTTTACATTGTATACACTACTTAGTCGATTC # Right flank : CTGTTTGTTTTATTAACCTCTGTCCTTATTTTCTCTTTTCTCATTAATAAGTTTTCATTACACCTCTTAGTTCTTCATGCGACCGATTTTCCTTGTAATTTTAATTTCGTAATACGGTCGCATGGTCTTTTTCACTAATTGAAAGAGAAAATGTATTTATAAGGCTTCAATTCTTCTTTTGATTCTCGCAACGGTCGCATTGAGGCTAAAACTTTATCGCTTTTAAACTCTTAATAAAACTCGAACCTTTTCCTACTATTTATCTGTATTAAACAATTCAAAGATTATCACATTCATTGAATTATATTTAGATTGATGCCCTTAATATATTAACTATTTTTAAAATTAGGCACAGTTATATTTTTAAATAGATTTTTAAACATCGTATTTTCCCTTGTTTATTCCTTCGCGTGGAAATAAAAATCGTTTATTATCGTGTTAAATTAATAAACAGTTAAAACTTTCTATCCAGCATGGGAGTGTTTTTACACTCTTGTAAG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAATCCCTTTTGGGATGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 1540612-1541529 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045482.1 Acidianus ambivalens strain LEI 10 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 1540612 25 100.0 39 ......................... AACTTTATACCCGCATCTTTGTCAATGTACACAAGTGCA 1540676 25 100.0 40 ......................... TATGACAGTTGACAAGAAATATAACATCGTTTTTACATAT 1540741 25 100.0 40 ......................... AAAATCCACTTCTGTCCAAGAGATACTATGCTTATTAACG 1540806 25 100.0 38 ......................... ATGTATGTTACGTGTTTGCCGTTGACGGACAGTACTTT 1540869 25 100.0 39 ......................... TAACATATTTGTCAACATAGGGTTTCGAAATCTTAATCT 1540933 25 100.0 38 ......................... TTTACTTATACAAAAAGAATACGAACTGGAAATGGCTA 1540996 25 100.0 38 ......................... GTGTGTCACAAACAGACAACTTACTGTTATCCAACGTG 1541059 25 100.0 38 ......................... TAATAACTTAGAGATAAAAAATGAACTGAAGATAGAAC 1541122 25 96.0 38 ..A...................... TTTTCATCGCAATCACATTCTTCAAAAAATTCATCTAA 1541185 25 96.0 39 ..A...................... TTGATAATTATTGCGGCTATACATAAAATACTTCTAAAA 1541249 25 100.0 41 ......................... AAATTATTCCATCAGTATAATTATTTGCATAATTTATGTAT 1541315 25 100.0 40 ......................... CTCTCCTTCTTCACGTTTCATCAGTACGAAATTAAAACAT 1541380 25 100.0 39 ......................... ATTTCACCCGCCGTCTTTAAATCCGTATTTGTATGCCTA 1541444 25 100.0 36 ......................... TTGACATATTTTTTTACTTTGTCAAATGGCATATCA 1541505 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================= ================== 15 25 99.5 39 GTTGCATCCCAAAAGGGATTGAAAG # Left flank : TTGTTAAAAATTTTTATCATACTCGCATATTCACTGTTAAATTTAAAGGAATTTTAGTATTCTGTTTCAGAAAAAATATTTTTAGTTATACGACGTTATTCCGATGAGGGAAAATACGTAGTTTAAAAATTAGCTTAAAAAGATAGCTACACTTGAAAGTAAATAGTATTAAATAAAATACGAAATATTAATGAATAAAATATAACGAACGGAAAGGATTTAGAACCGTTTATCGTGGATAGGTAAACCTAAGAGTTATATTTTTATTAAGAGTTTAAAAGCGATAAAGTTTTGGTCTCAATGCGACCGTTGCGAGAATCAAAAGGAGAATTGATGCCTTATAAATACATTTTCTATTTCAATTAGTGAAAAAGACCATGCGACCGTATTACGAAATTAAAATTACAAGGAAAATCGGTCGCATGAAGAAATAAGAGGTGTGATGAAAACTTATTAATGAGAAAAGAGAAAAATAAGGACAGAGGTTAATAAAACAAACA # Right flank : GGATAATATATCTTTAGCGATTCCTTTTAATTTTAGAGTTGAAAAACTAATCCATGTAACCACGAGTTACCTGAGCTAGCTAAAAGTTTGCTAACATGTTCAAGAATGTTTAGAGCTATTAGCTCTGCTAGGTGATGAAATTAACAAGTAATCATTAGGTATTACAATGTACTAAGTAGTGCTAGTTATTATTTTATTTATTTGTTTAGTTAACTATACTAATCTTATAGACTAAGAACTAGAAATCGTAAATAATCTTAATTTATATTAATATCATAAATCATATAATAAAGAGGTAATAGAATGTTTTATTCGTTTTTCAATTTAATTTTATTAATTTTATCAAGAAAATCCTTTAATTTACAAAAAGAATCGTCTAATAAACGCTTATATACATTGTTTATAACGTTTAAATCAGAAGGTAAAATAAAGCCTCCATGTGCAAGAAAAGAATTATTCCTAATGAAATCCATTAAGCTCATAGGAACATTATTAACACC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCCAAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 4 1556359-1555509 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045482.1 Acidianus ambivalens strain LEI 10 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================== ================== 1556358 25 100.0 39 ......................... CATTCGGATATGAGCCATGGGCTTTTTGCTCACCATATT 1556294 25 100.0 36 ......................... TTAGAGATTCGTTTGACTATAGAGAATGTACCTTAC 1556233 25 100.0 38 ......................... AGTAGATAGAATATCGGGACTAACGAAACTAGTGTCGC 1556170 25 100.0 39 ......................... ATCGATTAAGTTCTCTCTATTTTTCAGTCTGTAGATTCT 1556106 25 100.0 39 ......................... TTTTACTTGAGAAGGAGAAAGGGGTTCAACTAGGACTAG 1556042 25 100.0 42 ......................... TGATTGTTTGTTATATTATAATAATTAGGAATTATTGAATTG 1555975 25 100.0 38 ......................... GTTGTTTTTAACCCGAATTCGTCCCTATAAGCCATTGC 1555912 25 100.0 39 ......................... ATAATTTAGTTTTACAGCTCTGATGATATATCTATATAT 1555848 25 100.0 39 ......................... TTAGACTGGGAAGAAGAACTGAGCGAGGACTTCCAACAA 1555784 25 96.0 38 ........T................ CTGAATTGTTGATTCATTTCGCATTCTACAACTAATAA 1555721 25 100.0 37 ......................... TTGTTAGTCGTCCCTTTTACTATCGTCGGTGGATATC 1555659 25 100.0 38 ......................... GTAAACTGGGGTGTTTATTCGAAGTTTAGAGACTGGTG 1555596 25 100.0 38 ......................... AATATAGCAAGTTTGTTATCGTTATTGTTCAACCTTAT 1555533 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================== ================== 14 25 99.7 39 GTTGCATCCCAAAAGGGATTGAAAG # Left flank : AATAAAAAGTGTTCAATAATACTGCGTATAAATGTAAATTATATAGCTTTATTCTTGATAAAAATTTTAAGAAAACGATTTTTAGTTTTACGCTGTTAATTCTGTGAGGGAAAAATCGAGACTTATAAATTCTTTTATAAAGATATTGGCTCCTTTTTATAAAAAGCTATTATTTATTACTCTTTATTTTCTGAATAAATTCTTACGAACGTAACTATTCTAGAATCGTTTATTGACGATAGTTTAACCAAGATGTTCGAGTTTTATTAAGAGTTTAAAAGCGATAAAGTTTTGGTCTCAATGCGACCGTTGCGAGAATCAAAAGAAGAATTGAAGCCTTATAAATACATTTTCTCTTTCAAATAAACAGGAAGACCATGCGACCGTATTACGAAATTAAAATTACAAGGAAAATCGGTCGCATGAAGAACTAAGAGGTGTGATGAAAACTTATTAATGAGAAAAGAGAAAAATAAGGACAGAGGTTAATAAAACAAACA # Right flank : CATGAATAAAATAATAAATTCGTAAGAAGGAAGTATATATTATGATATCAGGGACTACAGTAAAGCACTTTGCTTACTGCCCTCAAATAGTCAGGCTTGAGGCCATGGGTTTTACCGAGAGAGTCACTGAGGCAATGCGTGAGGGGCTAGAAGTTGATAGAGAGAAGACTGTTAATTTTCTTTACGGAGTTCTTAAGCCTTTGAACATCGTCGCTAAGCCTATATTTAGATATAATGATCTTGTAGGCTCTCCGGATTACGTATTATTTTTCAACAACTACGTAACTCCTCTGGACATTAAGCAGGGAAAAGAAAGGATTGACCACGTAATGCAGATTCTTTTTTACCTTTATATCATGGAAATGAAAGGATTTAACGTGAAGGAGGGGTTATTATATTACGTCCAACAAGGGAGGTTAAAGAAGGTAAGGTACTCTTTCAGGGAGAGGAATTATGTAGCTAGGATCATAGATGAAATAAGGGACGCAATGAAAGGTAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCCAAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 5 1561916-1563341 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045482.1 Acidianus ambivalens strain LEI 10 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================== ================== 1561916 25 100.0 39 ......................... CCCAAGAACTCATGAAGTACGGCTTAGTAGTATTCGTAG 1561980 25 100.0 39 ......................... ATTTCCTTAGGTAAAGGTAATATGGTGTAAACGTAATCT 1562044 25 100.0 38 ......................... GCCCCATTGGTAGGGTAAAATCCTAGTTCTTTTAGGAA 1562107 25 100.0 39 ......................... AATAATACGCCCCGCTTAGCCTTTGTGAACTGTTCTAAT 1562171 25 100.0 40 ......................... ACAATCTGTGATGCATGTGCTAATCACTTCTTCTTGACAT 1562236 25 100.0 38 ......................... TTTTCTTATCCCCATTAATATCTATGTTTCCGCAAGTA 1562299 25 100.0 39 ......................... TTATCGGCAGAAGTAACTAAGCCAGCATTATTAAGCATT 1562363 25 100.0 38 ......................... CTTCTTATGGAAGCATCAGTAACGTTATCAGTAATGAA 1562426 25 100.0 39 ......................... ATTTCAACTTCATAACCGTTAAAATCACCGCTAATTTCA 1562490 25 100.0 38 ......................... TCAATAGCAATTGTTTCGATAACTGCACATAAAATATA 1562553 25 100.0 39 ......................... ATAATTCTAGACCTTCAATCTTCTTATCATTGATAATTA 1562617 25 100.0 40 ......................... TCATCTGACGTCTTAAATACGCTTTTGGATATAATTTTAA 1562682 25 100.0 38 ......................... ATATGCAATAATTTATGATTATGCAGAAATTATAGAAT 1562745 25 100.0 39 ......................... TTTTCATGTTCATTTCAACTTCTAGAAGAACGTAGTCTT 1562809 25 100.0 39 ......................... TACGTTGACGTTGAGCGTGATATTATTATTTGCCGTGAT 1562873 25 100.0 38 ......................... TTTCCAACGACCTCACCACTCCTACTTAGGAAGAACGA 1562936 25 96.0 40 ........A................ ATATTATGCAATTAGGAGAAATAGATATTATTTATTGTAC 1563001 25 100.0 38 ......................... AAAACTGATAAATGTCCTTGTTCTGCTAAAGTCTGAAA 1563064 25 100.0 39 ......................... TTCCCGTCTGGGTTTGTAATGTAACAAAACTCATCATCG 1563128 25 100.0 39 ......................... GCTATTTCATAGACATCTTCTAATGGTCCCCTCTTTATC 1563192 25 100.0 37 ......................... AACATTATCTAGTCTCCAAAGGAGGAAGAGGAAGGAG 1563254 25 100.0 38 ......................... TTAAGCAGAGGATAACGTTTAGATGGGAAGAAGATTAT 1563317 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ======================================== ================== 23 25 99.8 39 GTTGCATCCCAAAAGGGATTGAAAG # Left flank : TCATAAAAAGTTTTTACAAAAATCTCCAGTTTAACTTTCAAGATTTAAGAGTTTTTTAAGTAATTTTATTAAAAACGATTTTTAGTTTTACGCTGTTAATTCTGTGAGGGAAAAATCAAGACTTATAAATTCTTTTATAAAGATATTGGCTCCTTTTAATGAAAACTGATAACTATATTTCCTTATACTCTAAATATAGTTTAAGGGATGTAACTAATCTTGAACTGTTTAACGAGAATAACTGGTATAAATAAGTTCGAGTTTTATTAAGAGTTTAAAAGCGATAAAGTTTTGGTCTCAATGCGACCGTTGCGAGAATCAAAAGAAGAATTGAAGCCTTATAAATACATTTTCTATTTCAATTAGTGAAAAAGACCATGCGACCGTATTACGAAATTAAAATTACAACGAAAATTGGTCGCATGAAGAAATAAGAGGTGTGATGAAAACTTATTAATGAGAAAAGAGAAAAATAAGGATAGAGGTTAATAAAACAAACA # Right flank : GAATTCTGAGGGTCTATGATTTTTGTTAAATAATTGCATCACGTGAAGAAATTGAGGAATAAGTTTTCCTAAAACTTATAATTAATCTCTTAATTAGTTATCTTGTGATATTCACTTTTACTTTCGAAGTTAAGCCTGATAGGGACGCTATAATCCCTCCTTTTACTTCAAAACTTAGTAGATCTATTTTCCTCGACTTTTCTCCTACTTATTCGAAGTTTATAGAAGCGGAAGAACCTTATAAGCCCTTTAGGATTACGGTCTTAAAGGACGGAAGTACTCCGATTTACTCCAAGGGAAACGGCATGGTGACTTTGACCGGAGGGAAGATATATAATTTTAGCGTTACCACTACATTACAAAAGGTTGTTGAAGAAGTAGTTAGGACTACTAGTATAGATAAGGAAATATTTAACGCAAAATTTCACGTTGAACTTGATAATATGGAGATGAAGGAGGAGTTGGGACTGGAGGATTCGAGGCTTTACAAGGTTTTCTTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCCAAAAGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA //