Array 1 237431-236684 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHNK01000018.1 Pasteurella multocida strain GH161213 NODE_35_length_501637_cov_244.248230, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 237430 28 100.0 32 ............................ AAGCACCATCGAAGATATCCTCTGCTCCGATT 237370 28 100.0 32 ............................ ATAATATTGACATGGTTACTTTCTACCCATTC 237310 28 100.0 32 ............................ ATTTAGCACAAAGGCTCGAAAGAGACATCAAG 237250 28 100.0 32 ............................ ACCAAGTTTGGCTTTCGTGACCAAATTTTAGA 237190 28 100.0 32 ............................ TTTTCGATAAACATCCGACACTTAATGAGAAG 237130 28 100.0 32 ............................ TCAATCGAAGCTTGGACTACTCGACGTTCAAC 237070 28 100.0 32 ............................ AAACTAGACCTACTACCTGTCCGTCCGCTTCA 237010 28 100.0 32 ............................ AGCTGCCTATGATGCTGATAAAGCAGTGAAAG 236950 28 100.0 32 ............................ AGCTTTGGGGCTGGTAATGCAGTAATCACTTC 236890 28 96.4 32 A........................... AGCATCGGAAATGGGCAGAGTTGCAGATGTAT 236830 28 100.0 32 ............................ TTTCACTAGAACGCCTGAAAGCAATTTACCCA 236770 28 100.0 32 ............................ GCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGT 236710 27 82.1 0 ............A.......T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.3 32 GTTAACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAGTCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCACCTCGCACCAAAGCACCGAAAGAGGGAGAAATTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAACAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCTTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16318-17368 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHNK01000019.1 Pasteurella multocida strain GH161213 NODE_42_length_193993_cov_221.597092, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16318 28 100.0 32 ............................ TTTTGGGCACCGAAATGATGACCACCAGACCC 16378 28 100.0 32 ............................ TTTCACATTGCCCGCTTTTTGAAACTCGGCGA 16438 28 100.0 32 ............................ TAATAACTGAATCTAACTGATTGAATTAGATT 16498 28 100.0 32 ............................ AAGCGGAAGGCTACCAACAAAACGGCACAGAA 16558 28 100.0 32 ............................ ATTCATTTTTACTGCTGGAAACAAATAATTAT 16618 28 100.0 32 ............................ TGCAGTCAACCACTTTGATGTAATTAATACAA 16678 28 100.0 32 ............................ TGAGATTGAAGCTCGATTTGATGCAGAGAAAT 16738 28 100.0 32 ............................ CTGCAAAGTTTAAACTACTGATTAAACTCGTG 16798 28 100.0 32 ............................ TAGAATCAAACGTGCTGCGGATTTTTCACACC 16858 28 100.0 32 ............................ ATCAATGCGTGTGCGATTTCTTGTTGATGTAA 16918 28 100.0 32 ............................ ATCAATGCGTGTGCGATTTCTTGTTGATGTAA 16978 28 100.0 33 ............................ CCAAATCATCGCCCAAATATCAGGTGTTTTTTC 17039 28 100.0 32 ............................ TTAAAGGCGCTTTACAAGTGGAAGAAGTAAAA 17099 28 100.0 32 ............................ TCAGGAATATTATCTAAGTTATCAAACAATTG 17159 28 100.0 32 ............................ AATCAACTGTTTAAAAGTTCCGCGCTACACAC 17219 28 96.4 33 ............T............... ATCGCGGAGCGATTCTCGCAAAGAACCCGCGTA 17280 28 100.0 33 ............................ AAAAAAGAGCTTGAGTTACTCAAAGCAAAACGT 17341 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCAAAGTGAGTAAAACGCCGTTGCCTACCGAGCACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGTCGCAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCTCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //