Array 1 477215-478035 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEQS010000002.1 Salmonella sp. 32010601201800023SM NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 477215 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 477276 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 477337 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 477398 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 477459 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 477520 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 477581 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 477642 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 477703 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 477764 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 477825 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 477886 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 477947 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 478008 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 494206-495946 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGEQS010000002.1 Salmonella sp. 32010601201800023SM NODE_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 494206 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 494267 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 494328 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 494389 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 494450 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 494511 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 494572 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 494633 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 494694 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 494755 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 494816 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 494877 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 494939 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 495001 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 495062 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 495123 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 495184 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 495245 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 495306 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 495367 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 495428 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 495489 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 495551 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 495612 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 495673 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 495734 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 495795 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 495856 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 495917 29 93.1 0 A..............A............. | A [495943] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGTTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //