Array 1 144111-144474 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQL010000007.1 Clostridium sp. MSJ-4 Scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 144111 30 100.0 37 .............................. TTATCCACTACACCATTGTAAACTTTTCTGATATAGT 144178 30 100.0 37 .............................. TTGTCTATATAATTTTTCACAGAATCTATTGCAGGTA 144245 30 100.0 37 .............................. GATAAGGCACTTATAATAGCTAATCGAAATGGAGACT 144312 30 100.0 37 .............................. AATGGTTCTGTTATGCTAATTATCTCAATACCGTATT 144379 30 90.0 36 .........C......T..........G.. GGTGTTTCGCCACCATTAAGGGCGACCGATAATAGA 144445 30 86.7 0 A..C........................GC | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 96.1 37 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : GAGAACCCAAATCTGCGATTTGGTGTGAGTCGCTTACTCCTTCGACAAAGAGAGAAGGAGTTTCATCAAAATCAATTGATAAATCTTTTATTAAACCTTAACATAGGATGTATTTAAATTAAAGCCAACCAGTTTTCATGGAACCATCTGGGTTGTTAAACCTTAACATAAGATGTATTCAAGCAGAGAACCCAAATCTGCGATTTGGTGTGAATCGCTTACTCCTTCGATGAAAAGAGAAGGAGTTTCATATTATAATCAACTCTTGATCTCCAAACTCCTATTGGAACATAACCCCAAAAGCCTTCAATTTAGCATTATATTTTTCCAACCTCCAATTAAACAAGACACCCCCTAAGTCATTGAAAATACAAGGTTTAAAGGGTGTTTTCTATCAACTTTTTTAAAAACACAAATCGGTTGGAAAAATTTCAAAGAAACCCTTTATTTTCAACACTTTAAAGGATATAATGAAATTAAAGAATGGCTTAACTCCAGTG # Right flank : AGAGAACCCAAATCTGTGATCTGATGTGAGTCCCTTACTCTCCGAGTACTCCTTCGATGAAAAGAGAGGGAGTTTCATTTTCTTATTAAAAATTAATGAATCTATTTAACCTTGGCAAAATAATTGAAAAAGTCTCACT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 116-409 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQL010000018.1 Clostridium sp. MSJ-4 Scaffold18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 116 30 96.7 36 ...............A.............. TAAGGTCAATTCCTGCATTAGCTCCAACTAATTGTT 182 30 96.7 37 ...............A.............. CTAACGATGTTGATGACAATGAAAATCCTCGCTATCA 249 30 100.0 35 .............................. GCGTTAACTTCTATTACTCTTGCACCGCTTAAAGT 314 30 100.0 36 .............................. GTATTTGCGCAATTAGAACGTGAAACTATAGCTGAA 380 30 93.3 0 A.......C..................... | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 97.3 36 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : TGTTTTTTATAAAATTTTAAAAAAACACAAATCGGTTGGAAAAATTTCAGAGAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAAATAAAGAATGGCTTAACTACAGTGG # Right flank : TGGTGTTTCGCCATCATTAAGGGCGACCGATAATAGAGTTGAATCGCTTACTCTTCGAGTACTCCTTCCATAAAGAGAGAAGGAGTTTCATTTTATAATCAGCTCTCGATAACCAAAACCTTCGATTTAGAATTATTTTTTCCAACCGTCACTTAAACAAAACATCCTCTAAACCATTGAAATCTCAAAGTTTAAGGCGTGTTTTTCATCAACTTTTAAAAAAACACAAATCGGTTGGAAAAATTTCAAAGAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAAATAAGGAATGGCTTAACTGCAGTGGTTGAACCCTAACATAGGATGTATTTAAATCTAAAAATCTCCGTATTAGCAGTATTTAAGCCATGGTTGAACCCTAACATAGGATGTATTTAAATTAATTTAATACGTAGTTTCCCAAAGGATTAACTTCGTTGAACCCTAACATAGGATGTATTTAAATTTTTATTCCAACCCTAAACAACCTAT # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : GTTGAACCTTAACATAAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 723-1472 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQL010000018.1 Clostridium sp. MSJ-4 Scaffold18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================== ================== 723 30 100.0 35 .............................. CTAAAAATCTCCGTATTAGCAGTATTTAAGCCATG 788 30 100.0 35 .............................. TAATTTAATACGTAGTTTCCCAAAGGATTAACTTC 853 30 100.0 37 .............................. TTTTATTCCAACCCTAAACAACCTATTGGTTGCCCGT 920 30 100.0 35 .............................. GATATTGTTTTGGTGGTCCAGCTACCGCCACGCTT 985 30 96.7 36 ........T..................... AACCATCCCGGAAGAAAGTAGAAGCACCACATATGA 1051 30 90.0 38 ........T......GA............. TAACTTTCTAAGGAGAACCCCTTGATACACTTGTACAA 1119 30 90.0 35 ........T......GA............. TAAGTGTAAACAGCCTGTTTGCTTACACTTAGTAA 1184 30 90.0 36 ........T......GA............. TAGAATAAGTATTGAGAAATATTAGGGCATTCCCCT 1250 30 83.3 98 ........T......GA...........GC AGAGAACCCAAATCTATGATTTGGTGTGAATCGCTTACTCCTTCGACAAAAAGAGAAGGAGTTTCATTTTTTCATAAAACTCAATTTATAAATTTATT 1378 30 93.3 35 A......T...................... TAGATATATCCATTTATCCATGCCTTGCCTTGTCT 1443 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ================================================================================================== ================== 11 30 94.2 42 GTTGAACCCTAACATAGGATGTATTTAAAT # Left flank : GATGACAATGAAAATCCTCGCTATCAGTTGAACCTTAACATGAGATGTATTTAAATGCGTTAACTTCTATTACTCTTGCACCGCTTAAAGTGTTGAACCTTAACATGAGATGTATTTAAATGTATTTGCGCAATTAGAACGTGAAACTATAGCTGAAATTGAACCCTAACATGAGATGTATTTAAATGGTGTTTCGCCATCATTAAGGGCGACCGATAATAGAGTTGAATCGCTTACTCTTCGAGTACTCCTTCCATAAAGAGAGAAGGAGTTTCATTTTATAATCAGCTCTCGATAACCAAAACCTTCGATTTAGAATTATTTTTTCCAACCGTCACTTAAACAAAACATCCTCTAAACCATTGAAATCTCAAAGTTTAAGGCGTGTTTTTCATCAACTTTTAAAAAAACACAAATCGGTTGGAAAAATTTCAAAGAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAAATAAGGAATGGCTTAACTGCAGTG # Right flank : CAGAGAGCTTAAATCTATGATTTGGTGTGCCTTCGACTAAGAGAGAAAGAGTTTCATTTTTTATCAAAATTAATAAATCTATTTAGCTCCTGCCAAAGTAATCGAAAAAGTCTCAATCTACCCTTTCCTTCTAATTTCCTAATCTCACCAACTCTCGATAATCAAAACCTTTAATTTAGCATTATATTTTTCCAACCTCCAATTAAACAATACACCCTCTAAGTAATTGAAAATACAAGGTTTAAAGGGTATTTTTTCTTAACTTTTTAAAAACATAAATCAGTTGAAAAAATTTTAGATAAACCCTTTATCTTCAACAGGTTAAAGGATATAATGAAAATAAGGAATGGCTTAATTGCAGTGGTTGAACCTTAACATAGGATGTATTTAAATTGGTACTTCCTTAATTGATTGGACATATTTGATACGTTGAACCTTAACATAGGAGGTATTTAAGCAGAGAACCCAAATCTATGATTTGGTATGAATCGCTTACTCCT # Questionable array : NO Score: 5.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.55, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCTAACATAGGATGTATTTAAAT # Alternate repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 2246-2668 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQL010000018.1 Clostridium sp. MSJ-4 Scaffold18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================================================================== ================== 2246 30 100.0 37 .............................. CCAGTTGTCCAGTAATTTAAAGATTTTCCTGTAACAT 2313 30 100.0 37 .............................. CTGTGTAGCCATCCAAAGAAACTTTTAAGTATAGATA 2380 30 93.3 36 ...............GA............. GTTCCAGATACAACTTAAATTAAAATATTTTAAGAA 2446 30 93.3 35 ......G.C..................... TAGTAAGTTACCCCTACAGCATATGCCTGCCATAT 2511 30 86.7 98 ...............GA...........GC AGAGAACCCAAATCTGGGATTTGGTGTGAATCGCTTACTCCTTCGATGAAAAGAGAAGGAGTTTCATTTTTTCATTAAAATCAATTGATAAATCTTTT 2639 30 86.7 0 A.......C......GA............. | ========== ====== ====== ====== ============================== ================================================================================================== ================== 6 30 93.3 49 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : ATAAATCAGTTGAAAAAATTTTAGATAAACCCTTTATCTTCAACAGGTTAAAGGATATAATGAAAATAAGGAATGGCTTAATTGCAGTGGTTGAACCTTAACATAGGATGTATTTAAATTGGTACTTCCTTAATTGATTGGACATATTTGATACGTTGAACCTTAACATAGGAGGTATTTAAGCAGAGAACCCAAATCTATGATTTGGTATGAATCGCTTACTCCTTCGACAAAGAGAGAAGGAGTTTCATTTTCTAATCAACTCTTGATAATCAAAATTTCCTACTGTAATGTAATTCTTAAACCTTAAATTCAGCATTATATTTTTCCAACCTCCAATTAAACAAGACACCCCCTAAGTCATTGAAAATACAAGCTTTAAGGCGCGTACCCTATCAACTTTTTAAAAACACAAATCGGTTGGAAAAATTTTAGATAAACCCTTTATTTTCAACACTTTAAAGGTTATAATGAAAATAAGGAATGGCTTAATTGCAGTG # Right flank : GGTATTTCGCCACCATTAAGGGCGACCGATAATAGAGTTGAATCGCTTACTCTTCGAGTACTCCTTCCATAAAGAGAGAAGGAGTTTCATTTTCTTATTAAAAATTAATGAATCTATTTAACCTTGGCAAAATAATTGAAAAAGTCTCACT # Questionable array : NO Score: 4.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-1.24, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 37616-40339 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQL010000008.1 Clostridium sp. MSJ-4 Scaffold8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 37616 37 100.0 36 ..................................... GTATTTTTTCAATTATTAAACCTCCAACACTAACAG 37689 37 100.0 35 ..................................... TCTTTAGATGTTTCCCACGCAACACAGTTTCTTGC 37761 37 100.0 36 ..................................... GGTTCTCCAGTTATAACTATGTGTACCATTTCTAAA 37834 37 100.0 35 ..................................... TATTTCTCCACACTCCTATGTTGCACCACTGTGCT 37906 37 100.0 35 ..................................... GTATAGTTAACCTTATAACCTTCGTGTATTTCACA 37978 37 100.0 35 ..................................... TGTTTAAAAGAACGTCTAGAAGAAGTGGTGGCAAC 38050 37 100.0 36 ..................................... GCTTGTAAGTTTATATTGCCTAGCTTGGCTCTGCTC 38123 37 100.0 35 ..................................... GCTAATATTTCGCCTTCTTCTCTATCTGTTATAGC 38195 37 100.0 36 ..................................... TTGGAGCAATCCCAGTTAAAGAAAGCAAGATTTATA 38268 37 100.0 35 ..................................... ATTGGGATAGTTAAAAAATAACCCAGTGTGGGAGT 38340 37 100.0 36 ..................................... GGGTTGACAGTTAGAGAGTTGTCTGAGAAATCCAAT 38413 37 100.0 35 ..................................... AAAACTAGAATGGATGCAAATGAGGCTTTGTTTGT 38485 37 100.0 36 ..................................... TCAATGATGGTAAAGCGGGAACTCCAGATGTGGTGC 38558 37 100.0 36 ..................................... AAGCAGAAGATACTATTAGCGGACAAGAGGCTAGAG 38631 37 100.0 36 ..................................... AACATAAGATATAAGAAGGTGGTTTTATGACCAATC 38704 37 100.0 36 ..................................... ATGTACTAATCCAGAAAATACAAGTAGCGGCTGAAT 38777 37 100.0 35 ..................................... GATCGGTAGCATTATAAGAATCCTCGCTTGTCCAA 38849 37 100.0 36 ..................................... TTTTGCCTTTTTTATTACCTAAAAGAGAATATGAGG 38922 37 100.0 35 ..................................... CATTTTTGAAAATAAAATCGTGGCTATGGGTGATG 38994 37 100.0 35 ..................................... CACAGCAAATAATTTCTTTCATTTTTTCCTCTTAA 39066 37 100.0 34 ..................................... CTATTCTTGAAACTCATTTTTAAATATGATAAAC 39137 37 100.0 36 ..................................... AACGCTTTGTAGTACACTTTACTTATTAAAGGTACT 39210 37 100.0 36 ..................................... TATGGTTTGATTACTGACATAGTACAATTGATAAAC 39283 37 100.0 35 ..................................... TAAATAAGGACATTCGAATACTCCTTGGCTGTAGT 39355 37 100.0 36 ..................................... CAAAGATTGTCTCTTTATAAAAGCTTTTACTTCAGG 39428 37 100.0 36 ..................................... TACAATCTATATGGAAATACACAGCCTGAAAATACC 39501 37 100.0 36 ..................................... TTTGGAAGTGCAGAAGCAGGTAAGGCGGCTTTAATT 39574 37 100.0 37 ..................................... CTAATATAAGTTTCACCAATAATAATTTTATGCTTCT 39648 37 100.0 37 ..................................... AAACAAAGGATTTAAACTTAGCATGGTTATTATATCA 39722 37 100.0 36 ..................................... TATTTTTTAACTGTTTAGTAGAAAAAAATTATATGA 39795 37 100.0 35 ..................................... CAAGACAGTAAAGGTACTAGGAGCTTCAGATAATA 39867 37 100.0 35 ..................................... CAAGTTCCATTTTCCGTAACAGCATACTTTATACT 39939 37 100.0 37 ..................................... AAAGGATTTTCGGAAGATATTAAATACTCAAATAGCT 40013 37 100.0 35 ..................................... ACGCTTCCACAAGGTTAAGATATGTCTTATATTGC 40085 37 100.0 36 ..................................... AGGGGGAATAAGTTTGTTTGGGGATAGATTAAGAGA 40158 37 97.3 35 ......A.............................. CCTCCAGGCACTTGTTGTAGTCCAAATAAGCTGTC 40230 37 100.0 36 ..................................... ACACAAGGTATATTTTAATATTCTTATATTTTTTTG 40303 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 38 37 99.9 36 ATATTAGAAACTAATCCATTAAAACAAGGATTGAAAC # Left flank : CCTTGGATATCGTTAAGTCAAAAAAATATTGAAGCTTACAGAAGGGGCAATAAAATAGAGCAGGAAGAAATATTAAAGAAAATTTTAATAGGAAATATTATTTCTATGTCAAAGGGAATAGACTATACTGTGGATAAAAGAATTAACTGTTGGGTTAATTTAAAAGAAAAAGAAGTTATGCTAAAAGGTATTAAGCATATAGCATTCATAGGGAATTTTAAAGTGAACTTTAATATTCCAAACTATTTTGGTATTGGTAAATCTGTATCAAGAGGATTTGGAACCATAGAAAGAGTATAAAATATAGTGGAATTTTAAGAAGTAGACAAGTGATAAGTTTTTTAACGTTGATAAATCAATAGGCTTTAGGGTATACTAAGTATGTAATGTGGACAGAAATAGGAACTTTTTAGATTATAAAAGTATGATTAATGAAACTTTTAAACTTGTCTTTAAAATGCTATAAAGCGCACTAACTCTATAAAGTTTAAGAAATTGCT # Right flank : CATATTACTATTGAATCATTTATAACCTCAAATATATATTAGAAACTAATCCATTATCTCAACCTAGTTTGTTTTTTTATTTTCTCTTTGCATAACAGGCCGCCTTTTACTTTATTACTTGTTATTCTATACTATGGAGTTATTAAATTGTAGGCATCAATTTTTTTACGGTTACGTATTAGTTGTGTAAGACTGTAGATGAATACAGTAGGAAATACCAGAATTAGGTTCTTTAAGGGTTAGGGCTCATGATTTTTAATAAATAATTGATGAAGGAAAAACTCCTATTGTAGGTGAGAGAAACCTAATTTATGATATAATTTAAGTGAACAATGGGGGGATAACTATGGAATATACAATTATAGGAGTTTTATTAATGGCGACCTCACTTCTTATAATGCATATCAGTGAATTAAAAGACAGGATGAGTCGTATGAATTCAACTTTACAAAAGATTGCTAGCAAAGTTGGAGTGGAAGAACCTTTTATAGACCAAAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATATTAGAAACTAATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 2 87947-87652 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQL010000008.1 Clostridium sp. MSJ-4 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 87946 30 100.0 35 .............................. TTGGGTTACAATCTAGCCGTTCTAAGCAATACATA 87881 30 100.0 36 .............................. CCTTTTATTATGCCTTTTCTTTTACCAGCAAGAGAA 87815 30 100.0 36 .............................. TTCCAGTTGAATACTTGAAATACTATTAACTTTTTA 87749 30 93.3 38 ...............AT............. ATATCTGGACATGCTAAAAGCACTGTAAACAAATGGTA 87681 30 93.3 0 ........CT.................... | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 97.3 36 GTTGAACCTCAACATGAGATGTATTTAAAT # Left flank : CCTTAACATAGGATGTATTTAAATTCACACAGGTTATTACAGATCCATTTCTATACCAAATGTTGAACCTTAACATAGGATGTATTTAAATTATAGATCCTAAGCTATATGCTAGAGACCTTTATAAAGTTGAACCTTAACATAGGATGTATTTAAGCAGAGAACCCAAATCTGTGATTTGGCGTGAATCGCTTACTCTTCGAGTACTCCTTCGATAAAGAGAGAAGGAGTTTCATTTTTTATCAAAATTAATGAATCTATTTAGCTTCTGATAAATTAGTTTGAAAAAATCTCAATCTCCCCTCCCCTTCTAACTTCGTAATTTTTCCAACCGCTGATTAAACAAAACATCCTCTAAACCATTGAAATCTCAAAGTTTAAGGTGTGTTTTTCATAAACTTTTTAAAAACCACAAATCGATTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAGGTTAAAGGCTATAATGAAAATAAGGAATGGCTTAACTACTGTG # Right flank : GGTGTTTCGCCACCATTAAGGGCGAGAATTGAACCTTACCCCTTACCCCTTACCAACTTTAGTAGCCACGATAAAATCGTATTATACTAAAAGTGAAGGGACTGATTTAAGTGAACAAAAAATATAGTGCAGAATTTAAACTAGAAGCGATAATCTCAGTCCAGAAGACGAAAAACTTAGAAAACTAGAAAAAGAAAATGGAGAACTTAAAGAAGAATTTCAAATATTAAAAAAAGCCTCAGCTTTCTTTGCCAAGAACCTAAAGTAAAGAGATGTGAATTTATCAAGGCTACCCGCAACAAATACCGTATAGCGAAGCTATGTGAGGTTCTCAATATTGTTCTCAGTACTACCAAATTCTTGCATAAGCATAATTTCGCCTCCAGCATGCCCCGTAAAAATAATTGTTAGGTCAATACTCCCATGGAATCGTTTTGGGGTAAACTTAGATGTGAGTGGCTCCATGGAAAACACTTTAAAACACATGATGAGGCTAGAAT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTCAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.70,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 3 88915-88289 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQL010000008.1 Clostridium sp. MSJ-4 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 88914 30 100.0 36 .............................. TGTCTGCTACAGGTAATATCCATGAGCGTTCTATAA 88848 30 100.0 36 .............................. TTTATTTTTGATAGCCATGCAGTATTATAACAATTA 88782 30 100.0 35 .............................. AATAAAGATTATGGAATAATTGATATTGGCGGATT 88717 30 100.0 36 .............................. ATGTATTTTTTCATAATTACTGCCTACCTCTATTAA 88651 30 100.0 37 .............................. GCCAAAGATAGCTTATTTTTATCCGCATGGTCTTTCA 88584 30 100.0 36 .............................. ACCTTAAGCTTGTCTTTATCTATAAGTGCCATAATA 88518 30 100.0 36 .............................. TCAAATTAGATAAATAAATACTTTTCTCTATATTTT 88452 30 100.0 37 .............................. TCACACAGGTTATTACAGATCCATTTCTATACCAAAT 88385 30 100.0 37 .............................. TATAGATCCTAAGCTATATGCTAGAGACCTTTATAAA 88318 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 99.3 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : TAAAACGTTCAAAACCCCCGTAGCCATCCATCTACGGTTAACAAATTATACTTGAATATTATACCATAAGTGATATTTAGAATCTATGATTTTGTCATGGAGCTTTTATCCAATAACAAATGTAAATAATCCTTTTTTTAATATATAAGGAGTTTCATTTTCTTATCAAAATCAATATGTAATATTGGATATATTTAGCCCTGCCAAAATAATTGAAAAAGTCTCACTCTACCCTCCCCTTCTAGCTTCCTAATCTCATCAACTCCTAGTTGCCAAAATCCCATACTTCAATATAATTCTTAAACCTTAAATTCAGCATTATATTTTTCCAACCTCCCCTTAAACAAAAACTGCTTTAAACCCTTTAAATCCCAAGGTTTAAAGGGTATTTTTTATCAACTTTTTTAAAACACAAATCGGTTGGAAAAATTTCAGAGAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAATTAGAGAATGGCTTAACTGCAGTG # Right flank : AGAGAACCCAAATCTGTGATTTGGCGTGAATCGCTTACTCTTCGAGTACTCCTTCGATAAAGAGAGAAGGAGTTTCATTTTTTATCAAAATTAATGAATCTATTTAGCTTCTGATAAATTAGTTTGAAAAAATCTCAATCTCCCCTCCCCTTCTAACTTCGTAATTTTTCCAACCGCTGATTAAACAAAACATCCTCTAAACCATTGAAATCTCAAAGTTTAAGGTGTGTTTTTCATAAACTTTTTAAAAACCACAAATCGATTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAGGTTAAAGGCTATAATGAAAATAAGGAATGGCTTAACTACTGTGGTTGAACCTCAACATGAGATGTATTTAAATTTGGGTTACAATCTAGCCGTTCTAAGCAATACATAGTTGAACCTCAACATGAGATGTATTTAAATCCTTTTATTATGCCTTTTCTTTTACCAGCAAGAGAAGTTGAACCTCAACATGAGATGTATTTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 4 91188-90636 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQL010000008.1 Clostridium sp. MSJ-4 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 91187 30 100.0 36 .............................. ATATTAATTACTAGGCTTGCAATAAAAATTAATTAT 91121 30 100.0 37 .............................. GAAATGACTATTATTAGGCAAAACACAGAGAATCATT 91054 30 100.0 34 .............................. AAAGGAATTGAAAAAAATACTAGTAGACGAAGAA 90990 30 100.0 34 .............................. CCTACGCCAGTAAAACCTACATATGGTCTTTTTT 90926 30 100.0 34 .............................. AAATCAAATTCTATTTATTGTGTATGTGCCTGGC 90862 30 100.0 36 .............................. ACATCTATAACTCCTAAAAGAATGATGTTGTCTAGC 90796 30 100.0 36 .............................. AATTTAAGCTTATATGTGTGCATAAAAAAAGATACG 90730 30 86.7 35 A..A........................GC GAAGGAAGAGTTAGAGATACAGCAACTCCAAAAGG 90665 30 90.0 0 ...A........................GC | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 97.4 35 GTTGAACCCTAACATAGGATGTATTTAAAT # Left flank : AAAATCTATGCACGTATCTGTTGAACCTTAACATATGATGTATTTAAATTTACAAAAGCTTCTGATTTAAAATTAAAAAGAAAGTTGAACCTTAACATATGATGTATTTAAGCAGAGAACCCAAATCTATGATTTGGCGTGAATCGCTTACTCCTTCGACAAAGTGAGAAGGAGTTTCATTTTTTATCAAAATTAATGAATATATTTAGCCCTGCCAAAGTAGTTGGAAAAGTTTAAATCTCCCCTACTTTTCTAATTTCCTAATCTCATCAATTCTTGGCAACCAAAACTTCCTACTGGAAACCTTCAACTTAGCATTATATTTTTTCAACCTCCCTTTAAATCAGACCTGCTCTAAACCATTGAAAACACAAAGTTTAAGGTGTGTTTTTCATAAACTTTTTTAAAAACACAAATCGGTTGGAAAAATTTCAGAGAAACCCTTTATTTTCAACAGGTTAAGGGATATAATAAAAATAAGGAATAGCTTAACTACAGTG # Right flank : AGAGAACCAAGATTTAAAATCTTGTGTGAATCGCTTACTCCTTCGACAAAGTGAGAAGGAGTTTCATTTTATAATCATCTCTTGATATCTAAATCCTTACTGGAACGTAATCCCAGAAGCTTTCAATTCAGCATTATATTTTTCCAACCTCCAATTAAATAAAACACCTTTTAAGTCATTGATAACACAGGTTTCAAAGGATGCTTTTTATGACTTTTATTAAAAACACAAATCGCTTGGAAAAATTTCGAAGAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAAATAAGGAATGGCTTAACTACAGTGGTTGAACCTTAACATGAGATGTATTTAAATTTTCATCACCAACTTATTTTCGATATGTTTTATATTGTTGAACCTTAACATGAGATGTATTTAAATTATAACTTCGCCATCTATATCTCCCCTATCTTCTTAGTTGAACCTTAACATGATATGTATTTAAATGTTTTTTTATAATTATCTATGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 5 91733-91577 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQL010000008.1 Clostridium sp. MSJ-4 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 91732 28 100.0 36 ............................ ATTGGTTACATTTTTGAAAAATCTATGCACGTATCT 91668 28 100.0 36 ............................ ATTTACAAAAGCTTCTGATTTAAAATTAAAAAGAAA 91604 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ==================================== ================== 3 28 100.0 36 GTTGAACCTTAACATATGATGTATTTAA # Left flank : ATAAATAAAGAAGAAGATTTTATATGTATTATTAAACTTCTAAATGAAAAAGTGTATGGTGAAGAAATACTAGGAATTCAACAAAATAATACAGGTGAAGATCTCATAATATAATTTTTCCAACCTTCCTGTAACCAAAACATCCCCTGACCATTGAAAACACATGGTTAAGGGGTGTTTTTAATCAACTTTTGAAAAAACACAAGTCGATTGAAAAAGTCTCACTCTCCCCTACCCTTCTAGCTTCCTAATATAATCAAGTCTTGATAACCAAAACCTGCTACTGAAACATCATTCCAGAAACCTTAAATTTAGCATTATATTTTTCCAACCGCCGATTAAACAAAACACTCCCTAAACCATTGAAAATTGAAGGTTTAAAGGGTGTTTTTCATAAACTTTTGAAAAAACACAAATCGGTTGGAAAATTTTTAAACAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAAATAAGGAATTGCTTAACTGCAGTG # Right flank : GCAGAGAACCCAAATCTATGATTTGGCGTGAATCGCTTACTCCTTCGACAAAGTGAGAAGGAGTTTCATTTTTTATCAAAATTAATGAATATATTTAGCCCTGCCAAAGTAGTTGGAAAAGTTTAAATCTCCCCTACTTTTCTAATTTCCTAATCTCATCAATTCTTGGCAACCAAAACTTCCTACTGGAAACCTTCAACTTAGCATTATATTTTTTCAACCTCCCTTTAAATCAGACCTGCTCTAAACCATTGAAAACACAAAGTTTAAGGTGTGTTTTTCATAAACTTTTTTAAAAACACAAATCGGTTGGAAAAATTTCAGAGAAACCCTTTATTTTCAACAGGTTAAGGGATATAATAAAAATAAGGAATAGCTTAACTACAGTGGTTGAACCCTAACATAGGATGTATTTAAATATATTAATTACTAGGCTTGCAATAAAAATTAATTATGTTGAACCCTAACATAGGATGTATTTAAATGAAATGACTATTATT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATATGATGTATTTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 6 102886-102201 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQL010000008.1 Clostridium sp. MSJ-4 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================================================================== ================== 102885 30 100.0 36 .............................. CTTAACGTTTTTGCCATTTAAAACAACCCCTTTTTT 102819 30 100.0 36 .............................. CTTTAGACATTTTATCCATATCATCACTATTACCAC 102753 30 100.0 34 .............................. GCCCCCCAACCTATAAAACTACTAAAGAAGTTTT 102689 30 100.0 36 .............................. TTTACCCAAGGATCTATAGCTTTTCCATTTTGCTCT 102623 30 100.0 35 .............................. ACTTTACCAAGTTTTTTATTTATATATTCTTTATA 102558 30 93.3 36 ........C.......G............. TAGATGTTATTTCAGGCTGTATAGCCAGTTCTCTAT 102492 30 83.3 100 ......T........GA...........GC AGAGAACCCAAATCTGCGATTTGGTGTGAATCGCTTACTCCTTCGCCAAAGAGAGAAGGAGTTTCATTTTCTTATTAAAAATCTATTGATGAATCTATAA 102362 30 90.0 36 A.......C.......G............. GTATATCCATACGGAACAATACCGCCCATCCATTTA 102296 30 93.3 36 ...A.....C.................... TGCCTTGAACAAATTTTAATATTTCTAATAAAGTCC 102230 30 90.0 0 .......T...................GC. | ========== ====== ====== ====== ============================== ==================================================================================================== ================== 10 30 95.0 43 GTTGAACCTTAACATATGATGTATTTAAAT # Left flank : ATAGATGATGATGGGTTCCATAAAAATGAAGTTCGAAAGGCAATAACCTTGCTGTGTAATAAAGGATAAATCTATAATTTGATATAATCATGTTAATATAAACAATCCTTAGAACAAAGGCAGATAACCCAATCACTTACTGATCCAAGGTAGTAAGTAAAAGCTCCTCTACGGTGAAGTAAAACTTTCAATCCTGCATATACATCATCTATAAAAAATTTATTTTTATCTTAAAACTTAATCATAAAATTTAATGTACATAGAGATCCTCTTATTAAGAATCTCAATTCTAAGAACCCATTATTCTTCACTTAATATTATATTTTTCCAACCTCCCCTTAAACAAAAACCGCTTTAAACCATTGATACTACAGGATTTAAACTGTGTCTTCTATCAAATTTTCTAAAAGCACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAGGTTAAAGGATATAATAAAATTAAAGAATGGCTTAACTACAGTG # Right flank : CTGCCAAAATAATTGAAAAAACTCTCAATCTCCCCTCCCCTTCCAATTTCACTAATCTCATCAATTCCTAATAACCAAAGCCTCCTACTAGAATATCATTCTAAAAACCTTCAATTTAGTATCATATTTTTCCAACCTCCCCTTAAATGAAAACCGCTTTAAACCATTGATGCTACAGGATTTAAACTGTATCTTCTATGAAATTTTCTAAAAGCACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATTTTCAATACTTTAAAGGCTATAATGAAAATAAGGAATGGCTTAACTGCAGTGGTTGAACCTTAACATAGGATGTATTTAAATAACAAAAATTCTACTTCTTCAAATTTTCCTTCTCTAAGTTGAACCTTAACATAGGATGTATTTAAATGATATATATAATACAACTGGTGAATTATTTAATGAACGTTGAACCTTAACATAGGATGTATTTAAATTGGTACTATTTAGATACTCTTTTAGATTTACA # Questionable array : NO Score: 5.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.64, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATATGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 7 104677-103994 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQL010000008.1 Clostridium sp. MSJ-4 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 104676 29 96.6 37 ...............G............. AGTTCTTCAGTAAGTGGATTCCAATTCTTAAGTTGCG 104610 29 96.6 35 ...............G............. ATATTTCCATGCCACAACAAACGTTAATTGCTGTG 104546 29 96.6 38 ...............G............. GCAAGTATCTTTAATCTATTGGCAGCTACGTCATAGTG 104479 29 100.0 37 ............................. TAAAATGATCGAAAGAGACGGAATGGCTACGCTTGAA 104413 29 100.0 36 ............................. TTAAGCAGCTAATAGATCTCTCTTTGTCTTTCTTAA 104348 29 100.0 36 ............................. TACTTAAAACCTTTGGAAGTATAATATTCTATTACA 104283 29 100.0 36 ............................. TAATGACTTCTTGCTGTTACTCCAGGGTTGGCAGTA 104218 29 100.0 36 ............................. ACGTTTAAGGGATTTGCATTTCTATTGAAACTATCA 104153 29 100.0 37 ............................. AACCTCTATAATAATCTTCTTGAGAATATTTTGGCTA 104087 29 100.0 36 ............................. AATTAACAACTAAACTTTTATCTAATTTACTTTCTG 104022 29 96.6 0 ...............T............. | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 98.8 36 TTGAACCTTAACATAAGATGTATTTAAAT # Left flank : TAAGGAATTTCATTTTCTTATCAAAATTAATGAGTAATATTGAATATATTTAGCTCCTGACAAATTAGATGTATTTAAATGGTGTTTCACCACCATTAAGGGCGACCGATAATAGAGTTGAGTCACTTACTCTTCGAGTACTCCTTCCATAAAGAGAGAAGGAGTTTCATTTTCTAATCAAAATTAATAAATCTATTCAGCTCCTGCCAAAGTAATCGAAAAAGTCTCACCCTCCCCTTCTAGCTTCCTAATCTTTTTAACTTCTAATAGCCAACCCCTCCTACTAAAACATCATTCTAAAAACCTTCAATCTAACATTATTTTTTCCAACCTCCCCTTAAACAAAAACTGCTTTAAACCATTTAAATCCCAAGGTTTAAAGGGTGTTTTTTATCAACTTTTGAAAAAACACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATCTTCAATAGGTTAAAGGATATAATGAAATTAGAGAATGGCTTAACTGCAGTGG # Right flank : ACTTGAAAAATTATAGATTGGCTGGATTATATACGTTGAATCCTAGACAAGTGACTTAGGTTTTCTTTAGAACTACTAATATTACTAGCTTTAAGAGTAGTTATAGTATTCTAAATACTATAATTACCTAAATTTATATAAAAATATGTGTTTATTATTATATAAATTTTGATATAATAATATTAAGGAAACTTCACAGCCAAGCTCAGGAGTTCATAATTCTAAAAAAGTTTATAATAATTCTAGTAAGAAATGCAGAAAATAAAAATAGGGTGTTGGTAGCACCCTATAGTATACAATTCCAGTTATTTAGGCAACTGGTATCACTAGAATTTCTTCATTTAAAAATAGTAGCAACCAATTGCGGTAGGGGCTACTATTTTTTTGATATTTTATCTATAAGTAACACTACAAATGTTAATAGTGCAATTAAAAATAATCCACCAGTAAATAGTAACATCAAAATGTCATTACTCAAATGTATCACCTCCCTTCAAAAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACCTTAACATAAGATGTATTTAAAT # Alternate repeat : TTGAACCTTAACATAGGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 8 106382-105896 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQL010000008.1 Clostridium sp. MSJ-4 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 106381 30 100.0 36 .............................. TCACACCATTTCCCCCAACTATCACTAACAATATCC 106315 30 100.0 37 .............................. AATGGAGTTCCACTGTAATCCTCTGATTCTACATTAG 106248 30 100.0 34 .............................. TAAAGAGTTAACATTCCATAACTTGTGGTTGAGT 106184 30 93.3 36 ...............GA............. CTAACAATAATAATATAAAACAAAGTAATGAAACAT 106118 30 93.3 37 ...............CA............. CTTACTATGTTTCCCCATTCTGCATATTCACCATCAC 106051 30 93.3 36 ...............GA............. TAATTTTTTCTTTCCCTTCTAATAAATTTTCGATTT 105985 30 93.3 30 ........C................C.... TCAAAAGTAGAACCCTTTGTTTCTTTATAG 105925 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 96.6 35 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : TTTGGTGTGAATCGCTTACTCCTTCGACAAAGAGAGAAGGAGTTTCATTTTTTCATCAAAATCAATTGATAAATCTTTTATTTAACCCTAACATAGGATGTATTTAAATATACAGTATTTAATCTTTTGATTAAATTAGCTTTAGTTGAACCTTAACATGAGATGTATTTAAGCAGAGAACCCAAATCTGCCATTTGGTGTGAATCGCTTACTCTTCGAGTACTCTTTCGATGAAAAGAGAAGGAGTTTCATTTTATAATCAGCTCTTGGTATCCAAGCTCCTACTGGAACATAATCCCAAAAACCTTCGATTTATCATTATTTTTTCCAACCGTCACTTAAACAAAACATGATCTAAACCATTGAAAATTCAACGTTTAAAGGGTGTTTTTTATAAACTTTTAAAAAAACACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGAAAATAAGGAATGGCTTAACTACAGTA # Right flank : ACTTGAAAAATTATAGATTAACTGGATTATATACGTTGAATCCTAGCACAAGTGACTTAGGTTTTCTTTAGAACTGCTAATATTACTAGCTTTAAGAGTAATTATAGTATTCTAAATACTATAACAACCCAAATTTATATAAAAATATGTGTTTATTTTTATATAAATTTTGATATAATAATATTAAGGAAACTTCACAACCAAGCTGAGGAGTTAATAATTTTAAAAAAGTTTATAAGAGTCCTATAATAAGAAAAGCTTAGTGCGTCAACACTAAGCAATCCTTAGAACATTTATTTTGTTTTAGGGCTATTGGATTTTAACTATATTATTTGCTTAGTTAAGTAGAGAGAAGCACTAATCTTTGCGGGATGGGTGCTTTTTCTCTTTGCCATCAACTTCTATGTGGATACCAAGAAACTTTATCTTGATAATTAACTTAGAAACAAAAAGATTATGTTTTAAAACTAATTTAATAATATAAATAGTAGCAAAACTTT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 9 123626-122703 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQL010000008.1 Clostridium sp. MSJ-4 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================================================ ================== 123625 30 100.0 34 .............................. TATTTTCTTATTCTTTTACTAAAATTTCTCATAT 123561 30 100.0 36 .............................. AGAAGCCAATGTTATCTTTCTTGAAGGGAAATTGGC 123495 30 100.0 35 .............................. AATATTAATATTAGCACTGACATAATAGCTTTAAT 123430 30 100.0 34 .............................. ACTCTTTTATTAGCAATCTCTAAAGCTCTTTTCA 123366 30 100.0 35 .............................. GAACAAAATACCTTTTCAACCATAATATTTTTCAA 123301 30 100.0 38 .............................. GATAAAACAAAGTTAATAAACTCTGTTTTATCCTCCAA 123233 30 96.7 34 ........T..................... TATAGATATGGCTATGGAGGCATTAAGAACTAAA 123169 30 96.7 37 ........T..................... TCTGTTAATCGATTCCATCCACCCAATTTTGACCAAC 123102 30 96.7 37 ........T..................... TAAGGGTTAAGTGTAAGTTCTAGCACTTCACATGTCC 123035 30 93.3 37 ...............GA............. AGATAACAATGGCTATGTAAACATGCGACCTTTCCAA 122968 30 83.3 140 ........T......GA...........GC AGAGAACCCAAATCTATGATTTGGTGTGAATCGGTTAAGCAGAGAACCAAGATTTAAAATCTTGTATGAGTCGCTTACTCCTTCGACAAAGAGAGAAGGAGTTTCATTTTCTTATTAAAAATCAATTGCTGAATCTATAA 122798 30 86.7 36 A.....T.T.......A............. GATGTAGCAGAAATACAGAACGTAGTCGACGTTACT 122732 30 93.3 0 ...A............A............. | ========== ====== ====== ====== ============================== ============================================================================================================================================ ================== 13 30 95.9 44 GTTGAACCCTAACATAGGATGTATTTAAAT # Left flank : ATTATCATCGTGTTTATGCACGTTATTTCAAATCCAATCCCGCCTCTGGAAAGATAATGGAGAAGTGTGGAATGGCATACGAAGGCACTCTAAAAGATCATATTTATAAAAACAACTCTTTTGAAGACATTGTTTTTTATGGTATTATTAATCCCATGAAATAAGTATAATATGTGATATTTTATTATGCACTCTAATCCCCTTCAACAAATTATCAAAAATCATTGAAATTAGGTTATCCATGAAGATAGCCTAATTTTATATAACAAATCAACAATTTACTCTAACAGAGCCAATTTATAAAATTAAAAACTTAACATTATTTTTCCAATCGTGGCTTAAACAAAATATGATCTAAACCATTGAAAATCCAAGGTTTAAAGGGTGTTTTTCATCAACTTTTTAAAAAACACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAGTTTAAAGGATATAATGAAAATAAGGAATGGCTTAACTACAGTG # Right flank : ATTTTAAGACAAGGCAACCGGTATTTACATAAAGTTATTTTTATTTATATAATTACTGGAATTATAAGCCATAAATTATGTATAATAAGAATATAAATTATTGAGCAATTGTATTATTATGTGAGTTAGTTGTTTATTAAACTAACTGATAAATAGGAAGAAATATGATATAGCAATAATAAGATTATGGAGATTTTATATGAAGAATGTAAATATATATGGACTAATTATAATTACAATGCTTATGGGAGGACTATTTACCTTTTTGGGGTGGGTAATTAAAAGTCAAAATGCGGGAGATATGCTAAATGGGTTTGATGCAAAAAAATACGATAAAGATAAAGTATCAAGAATAGTAGGCGGAGATATCCTGTATACTGGTCTATTAGTTATCCTCGTTGGAGGTGTTGGTGTTTTTTTGAGTAGTAAATTCTATAATTATATAACTTTTACACAGGTCGGTATTGTAGTATTAGGAATTATAAAAAGTATGTATGAAA # Questionable array : NO Score: 4.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.83, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCCTAACATAGGATGTATTTAAAT # Alternate repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 10 127889-127271 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQL010000008.1 Clostridium sp. MSJ-4 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 127888 30 100.0 36 .............................. AGTCTGTTACAGAGATTTTATTTATCTGTAACACTC 127822 30 100.0 34 .............................. AAGAATGGGGTTTAGAAAAGTCTAAAGAATATTT 127758 30 100.0 37 .............................. ACTTATTAAATAAATTTAACTAACTAAATAAATAAAT 127691 30 100.0 37 .............................. AATTGAAGAAGCTAAAGAGGAAGAAATAAATATTATA 127624 30 100.0 34 .............................. TTGAATCTATATAGACTTTTCCATTTAGTAAAGT 127560 30 100.0 35 .............................. AATAATTCTTTTGTTACATCTTTACAAATATTATT 127495 30 96.7 36 .......G...................... CATTGTAACCCTCGTAGAAAGCCTTCTATAAAGCTT 127429 30 100.0 35 .............................. TGGATATACCCAACGCTTGTACCAATTAAATTAGC 127364 30 100.0 34 .............................. TTAACATAGAAGTTCCCTATTCCCGTAAAGGGTT 127300 30 86.7 0 ................G........C..GC | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 98.3 35 GTTGAACCTTAACATAAGATGTATTTAAAT # Left flank : CCTAAAAGCCATAGTTAAACCTTAACATAGGATGTATTTAAATCCAAAGTTTTTATAATAAGTTATTGCAGTTTCTTTGTTGAACCTTAACATAGGATGTATTTAAATTATATACCGACTAACTTGACTAAACCTTCTTCTCTTGTTGAACCTTAACATAGGATGTACTTAAGCAGAGAACCAAGATTTAAAATCTTGTGTGAATCGCTTACTCTTCGAGTACTCCTTCGACAAAGTGAGAAGGAGTTTCATTTTATAATCAGCTCTTGATATCCAACCTCCTGCTGGAACATAATGCCAAAATCCTTTGACTTAGCATTATTTTTTCCAACCGTCACTTAATCAAAATATGATCTAACCCATTGAAAATTCAAGGTTTAAGGGATGTTTTTTATTAACTTTTGAAAAAACACAAATCGGTTGGAAAAATTTCAGAGAAACCCTTTATTTTCAACAGGTTAAAGGCTATAATGAAATTAGAGAATGGCTTAACTACAGTG # Right flank : AGAGAACCAAGATTTAAAACCTTGTGTGAATCGCTTACTTTTCCAGTACTCCTTCCATAAAAAGAGAAGGAGTTTCATTTTCTTATAAAACTTAATGAGTAATATTGAGTATATTTAGCTCCTGACAAATTAGATATATTCAAATAGTAATATTAACTCCTGATATCCATGTCCTATGAATATTTAATTTCAACATAGAAGAGAAATATATTTAGATAAGTTACTTAAATTTAGACAGCATTGTAAAAAATATAGAAAAAAGATATTAAAATTTATATTGAAAACTATATTAATAATGACTAGAAATATAAATATTTATTTTTTATAAATATTTGATATAATAATGTTAAATAACCTCTACAGTAAGGCTGAGGAGTGCAGAATTCTAAAGAAAAAGGTTTCTAAGAATTCTAGTAAGAAGCTTAGTGCTAGAACACTAAGCTGAGTCTTAGAATATTTATTTTGTTTTAGAAATATTAGATAAAATTTACAATGTGGAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 11 128574-128215 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQL010000008.1 Clostridium sp. MSJ-4 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 128573 30 100.0 37 .............................. AGTGACCCCTTATTAATTAAAAACTTACTCCCTACCT 128506 30 100.0 35 .............................. TTTCCTCCTACATACTTAATTGGCTATTAGCCATC 128441 30 100.0 36 .............................. TAATATACATAAGCACCATTACCCCTAAAAGCCATA 128375 30 96.7 35 ...A.......................... CCAAAGTTTTTATAATAAGTTATTGCAGTTTCTTT 128310 30 100.0 36 .............................. TATATACCGACTAACTTGACTAAACCTTCTTCTCTT 128244 30 90.0 0 .......................C....GC | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 97.8 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : TTTTTCCAACCGTCACTTAAACAAAACATGATCTAAACCATTGAGAATTCAAGGTTTAAGGGATGTTTTTTATTAACTTTTGAAAAAACACAAATCGGTTGGAAAAATTTCAGAGAAACCCTTTATTTTCAACAGGTTAAAGGCTATAATGAAAATAAGGAATGGCTTAAGCAGAAAACCAAGATTTAAAACCTTGTGTAAATCGCTTACTCTTCGAGTACTCCTTCTACAAAAAGAGAAGGAGTTTCATTTTCTAATCAACTCTTGATCTTCACACCCTTCTACTAGAATATCATTCTAAAACTTTCAATCTAGCATTATATTTTTCCAACCTCCAATTAAACAAGACACCCTCTAAGTCATTGAAAATACAAGGTTTAAAGGATATTTCTCATCAACTTTTTTAAAAACACAAATCGGTTGGAAAAATTTCAAAGAAACCCTTTATTTTCAGTAGGTTAAAGGCTATAATGAAATTAGAGAATGGCTTAACTGCAGTG # Right flank : AGAGAACCAAGATTTAAAATCTTGTGTGAATCGCTTACTCTTCGAGTACTCCTTCGACAAAGTGAGAAGGAGTTTCATTTTATAATCAGCTCTTGATATCCAACCTCCTGCTGGAACATAATGCCAAAATCCTTTGACTTAGCATTATTTTTTCCAACCGTCACTTAATCAAAATATGATCTAACCCATTGAAAATTCAAGGTTTAAGGGATGTTTTTTATTAACTTTTGAAAAAACACAAATCGGTTGGAAAAATTTCAGAGAAACCCTTTATTTTCAACAGGTTAAAGGCTATAATGAAATTAGAGAATGGCTTAACTACAGTGGTTGAACCTTAACATAAGATGTATTTAAATAGTCTGTTACAGAGATTTTATTTATCTGTAACACTCGTTGAACCTTAACATAAGATGTATTTAAATAAGAATGGGGTTTAGAAAAGTCTAAAGAATATTTGTTGAACCTTAACATAAGATGTATTTAAATACTTATTAAATAAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 12 134525-133707 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQL010000008.1 Clostridium sp. MSJ-4 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 134524 30 100.0 35 .............................. GATTGTATTAAAACTAGACTTAAATTTTTATTTAT 134459 30 100.0 37 .............................. TTATTTTCAATATAGTATTTTGAAGCTTCAAGTGCAG 134392 30 100.0 36 .............................. GAAAGAAAATTGGAATTATGCTTGGTTAGAAGATGA 134326 30 100.0 37 .............................. AGCTTGTTTGGTCTTCTGTTGGATTATAATAACTTCC 134259 30 100.0 35 .............................. TATCTGCAGTTATTGAAAGCTATTTCCCTTCCTGG 134194 30 100.0 34 .............................. TCTTTAACAACTACTGCATAAGCGCCTTTTATTT 134130 30 100.0 35 .............................. CGTAAAATAACTTCTATTTCTTTTTCATCCAACGG 134065 30 100.0 37 .............................. CTACTATCTGTTAGTATTATTCTTTTCCAAAATGGCA 133998 30 100.0 35 .............................. TTACTCCAGCAGCTGATACGCTGTAAGTATTCATA 133933 30 100.0 37 .............................. CAAAGTGGGGATAATACTGCTTTAGCTATGGTTACAG 133866 30 100.0 36 .............................. AGATAATTAAAATAATTATTGGCGTGATACAATGTA 133800 30 90.0 34 ............T..AT............. TAAGTGTAGTAATTAGAGTTATAAGAATTACAAT 133736 30 86.7 0 ...............AG...........GC | ========== ====== ====== ====== ============================== ===================================== ================== 13 30 98.2 36 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : ACATAGGATGTATTTAAACAGTATTTAAAATCTTCTCCCGCTGGCACGCTTGTTTGTTGAACCTCAACATATGATGTATTTAAGCAGAGAACCCAAATCTGCGATTTGGTGTGAATCGCTTAAGCAGAGAACCAAGATTTAAAATCTTGTATGAGTCGCTTACTCTTCGAGTACTCCTTCGACAAAGAGAGAAGGAGTTTCATTTTTTAATCAACTCTTGACAAACAAAATTCCTCAAAGGAGTTTCATTTTTTAATCAACTCTTGACAAACAAAATTCCTCACTGGAACATAATCCTAAAAACCTTCAATTTAGCATTATATTTTTCCAACCGTCGCTTAAACAAAACATGATCTAAACCATTGAAAATTCAAGGTTTAAAGGGCGTTTTTCATCAACTTTTTAAAAAACACAAATCGGTTGGAAAAATTTCAGAGAAACCCTTTATTTTCAATAGGTTAAAGGATATAATGAAATTAGAGAATGGCTTAACTACAGTG # Right flank : AGGGAACCCAAATCTATGATTTGGCGTGAGTCGCTTACTCCTTCGATAAAAAGAGAAGGAGTTTCATTTTCTTATCAAAATCAATGAGTAATATTGAATATATTTAGCTCCTGCCAAAGCAATTGGAAAAACCTTCACTCTCCCCTACCCTTCTAATTTCCTAATCTCATCAATTCCGCCAAAATCCCATACTTCAATTATAAAACCTTCAATCTAGAATTATATTTTTCTAATCGTTGCTTAAACAATACACTCTCTAAGCCATTGAAAATACAAAGCTTAAGGAGCATACCCTATCAACTTTTTCAAAAAACACAAATCGGTTGGAAAAATTTCAAAGAAACCCTTTATTCTCAAGAGGTTAAAGGCTATAATGAAAATAAGGAATGGCTTGACTACAGTGGTTGAACCTTAACATATGATGTATTTAAGCAGAGAACCCAAATCTGTGATTTGGTGTGAATCGCTTACTCCTTCGACAAAGAGAGAAGGAGTTTAGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 13 135234-134940 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQL010000008.1 Clostridium sp. MSJ-4 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 135233 30 100.0 35 .............................. GTATATTTTTATAGTATCTTTACGATTTTATTATT 135168 30 100.0 36 .............................. TTAGAAGGATATGATAAAAGTATATATTCTAACTCC 135102 30 100.0 37 .............................. CAAGCATATGCTCTTTTGTCTGTTTTTAATTTTACTT 135035 30 100.0 36 .............................. AGTATTTAAAATCTTCTCCCGCTGGCACGCTTGTTT 134969 30 90.0 0 .........C......T...........G. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 98.0 36 GTTGAACCTTAACATAGGATGTATTTAAAC # Left flank : TGATCCTCTGCATTTGCACATAGTTGAACCTTAACATAAGATGTATTTAAATGAATATACACCTATAACTGGTGACTTACTATCTTCGTTGAACTTTAACATATGATCTATTTAAATTTGCATAGGTCCACTAAATAGATCCTATCTTGTTTAGTTGAACCTCAACATATGATGTATTTAAGCAGAGAACCCAAATCTATGATTTTGTGTGAGTTGCTTACTCCTTCAACAAAGAGAGAAGGAGTTTCGTTTTTTAATCAACTCTTGATAAACAAAATCCTCACTGGAACATAATCCCAAAAACCTTCAATTTAGCATTATATTTTTCCACCCTTCAATTAAACAAGATACCCTCTAAGTCATTGAAAATACAAGGTTTAAGGAGCATACCCTATCAACTTTTTAAAAAACACAAATCGGTTGGAAAAATTTCAAAGAAACCCTTTATTTTCAACAGGTTAAAGGCTATAATGAAATTAGAGAATGGCTTAACTACAGTG # Right flank : AGAGAACCCAAATCTGCGATTTGGTGTGAATCGCTTAAGCAGAGAACCAAGATTTAAAATCTTGTATGAGTCGCTTACTCTTCGAGTACTCCTTCGACAAAGAGAGAAGGAGTTTCATTTTTTAATCAACTCTTGACAAACAAAATTCCTCAAAGGAGTTTCATTTTTTAATCAACTCTTGACAAACAAAATTCCTCACTGGAACATAATCCTAAAAACCTTCAATTTAGCATTATATTTTTCCAACCGTCGCTTAAACAAAACATGATCTAAACCATTGAAAATTCAAGGTTTAAAGGGCGTTTTTCATCAACTTTTTAAAAAACACAAATCGGTTGGAAAAATTTCAGAGAAACCCTTTATTTTCAATAGGTTAAAGGATATAATGAAATTAGAGAATGGCTTAACTACAGTGGTTGAACCTTAACATGAGATGTATTTAAATGATTGTATTAAAACTAGACTTAAATTTTTATTTATGTTGAACCTTAACATGAGAT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 14 136703-135551 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQL010000008.1 Clostridium sp. MSJ-4 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 136702 30 100.0 36 .............................. TGCTATAGTCTTTATTGTTTTTAGTCTTAATATTAT 136636 30 100.0 37 .............................. AAATGATATGGGTAAGTATGATGCAGATAAAATAGCC 136569 30 100.0 36 .............................. CTATCTAAGTTGCTTATAACCTCTCCCATATCATTA 136503 30 100.0 36 .............................. TTGTCTAAAGCTTGTTTATACAATATGTCTTTAGTT 136437 30 100.0 36 .............................. TTTGTTTCTTTAATTACGTCTCCTATTATTATTGAC 136371 30 100.0 38 .............................. ATTTTATCGAAGACAACCATGGAGCAACAATAGAACAA 136303 30 100.0 35 .............................. TAATTTTCTACCTCAGAATATGATCTAGCTTCTTC 136238 30 100.0 36 .............................. CTCTGTTTTTAACCAAAAGAGAAGCAGAAGAGCATT 136172 30 100.0 35 .............................. GATTTCATTGGTTCAACTTTAGATAATCTTAATAT 136107 30 96.7 37 ................T............. CTGCCTTTTCATCTATTTCAACATAATCTATAGCCTT 136040 30 96.7 37 ................T............. TACTAAGATCAGGTTCATACCCTTTCTTAGCTGCTTC 135973 30 96.7 35 ................T............. ACACTGGAGAAATCCAATGCAGAGCTTACAACCTT 135908 30 96.7 35 ................T............. AAACTACAATCTAATAGTATTTCATCCGCATCGTT 135843 30 96.7 35 ................G............. GATTCTTGTATATATATTGTTCTTTCTTTGCAGCT 135778 30 96.7 37 ................T............. AATGATGTCCTTACTTGATCCTCTGCATTTGCACATA 135711 30 100.0 35 .............................. GAATATACACCTATAACTGGTGACTTACTATCTTC 135646 30 90.0 36 .......T........T...C......... TTGCATAGGTCCACTAAATAGATCCTATCTTGTTTA 135580 30 86.7 0 .........C......T...........GC | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 97.6 36 GTTGAACCTTAACATAAGATGTATTTAAAT # Left flank : TGTTTAGTTCCAGTTTTCCGTTAGTTGAACCTTAACATGAGATGTATTTAAATTTTCTTTGTTCTACTCCCCTGTTCAATTGACTTAAGGTTGAACCTTAACATGAGATGTATTTAAATTTTCTATCCTTACAATTCTTTCTAATATTTCTTGGTTGAACCCTAACATAGGATGTATTTAAGCAGAGAACCCAAATCTATGATTTGATGTGAATCGCTTACTCCTTCGATGAAAAGAGAAGGAGTTTCATTTTCTAATCAACTCTCGATAACCAAAACCTCCTACTGGAATATCATTCTACAAACCTTCAATATAACATTATTTTTTCCAACCTCCAATTAAACAATGCACCCTCTAAGCCATTGAAATACCAAGGCTTAAAGGGTGTTTTTTATCAACTTTTGAAAAAACACAAATCGGTTGGAAAAATTTCAGAGAAACCCTTTATTTTGAACAGGTTAAAGGATATAATGAAAATAAAGAATGGCTTAACTACAGTG # Right flank : AGAGAACCCAAATCTATGATTTTGTGTGAGTTGCTTACTCCTTCAACAAAGAGAGAAGGAGTTTCGTTTTTTAATCAACTCTTGATAAACAAAATCCTCACTGGAACATAATCCCAAAAACCTTCAATTTAGCATTATATTTTTCCACCCTTCAATTAAACAAGATACCCTCTAAGTCATTGAAAATACAAGGTTTAAGGAGCATACCCTATCAACTTTTTAAAAAACACAAATCGGTTGGAAAAATTTCAAAGAAACCCTTTATTTTCAACAGGTTAAAGGCTATAATGAAATTAGAGAATGGCTTAACTACAGTGGTTGAACCTTAACATAGGATGTATTTAAACGTATATTTTTATAGTATCTTTACGATTTTATTATTGTTGAACCTTAACATAGGATGTATTTAAACTTAGAAGGATATGATAAAAGTATATATTCTAACTCCGTTGAACCTTAACATAGGATGTATTTAAACCAAGCATATGCTCTTTTGTCTG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAAGATGTATTTAAAT # Alternate repeat : GTTGAACCTTAACATATGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 15 137574-137020 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQL010000008.1 Clostridium sp. MSJ-4 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 137573 30 100.0 37 .............................. GCAAACCCAGCTAGCATAACCATCATCATTTTGCCAG 137506 30 100.0 35 .............................. GCATTTAATAACTCCTCAAGTCTTATTTCCATTTG 137441 30 100.0 34 .............................. GTTTTTTAAAAGTATGGCATTGGATCAAGTAAGT 137377 30 100.0 36 .............................. GATGGTGCTTTGTTTTTTACAAGCATGAGTATGCCA 137311 30 100.0 36 .............................. CAATCAAATTCTATGTTTAGTTCCAGTTTTCCGTTA 137245 30 100.0 36 .............................. CAATCAAATTCTATGTTTAGTTCCAGTTTTCCGTTA 137179 30 100.0 36 .............................. TTTCTTTGTTCTACTCCCCTGTTCAATTGACTTAAG 137113 30 100.0 34 .............................. TTTCTATCCTTACAATTCTTTCTAATATTTCTTG 137049 30 83.3 0 ........C......AG...........GC | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 98.1 36 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : CCTTAACATATGATGTATTTAAATTATGGGAATCACTTAATAATAAAATAATAAGTTGTCGTTGAACCTTAACATAGGATGTATTTAAGCAGAGAACCCAAATCTGTGATCTGATGTGAGTCCCTTACTCTTCGAGCACTCCTTCCACAAAGAGAGAAGGAGTTTCATTTTTTATCAAAATTAATGAATCTATTTATCCCTGCGAAAATAATTGAAAAAGTCTCTATCTTCCCTCCCATTCTAACTTTCTAATCTCACCAACTCTTGATAATCAAAATTTCCTACTGTAATGTAATTCTTAAACCTTAAATTCAGCATTATATTTTTCCAACCGTCGCTTAAACAAAACATGATCTAACCCATTGAAAATACAAGCTTTAAGGAGCGTACCCTATCAACTTTTTAAAAAACACAAATCGGTTGGAAAAATTTCAAAGAAACCCTTTATTTTCAACAGGTTAAAGGCTATAATGAAAATAAGGAATGGCTTAACTGCAGTG # Right flank : AGAGAACCCAAATCTATGATTTGATGTGAATCGCTTACTCCTTCGATGAAAAGAGAAGGAGTTTCATTTTCTAATCAACTCTCGATAACCAAAACCTCCTACTGGAATATCATTCTACAAACCTTCAATATAACATTATTTTTTCCAACCTCCAATTAAACAATGCACCCTCTAAGCCATTGAAATACCAAGGCTTAAAGGGTGTTTTTTATCAACTTTTGAAAAAACACAAATCGGTTGGAAAAATTTCAGAGAAACCCTTTATTTTGAACAGGTTAAAGGATATAATGAAAATAAAGAATGGCTTAACTACAGTGGTTGAACCTTAACATAAGATGTATTTAAATTGCTATAGTCTTTATTGTTTTTAGTCTTAATATTATGTTGAACCTTAACATAAGATGTATTTAAATAAATGATATGGGTAAGTATGATGCAGATAAAATAGCCGTTGAACCTTAACATAAGATGTATTTAAATCTATCTAAGTTGCTTATAAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 16 138600-137984 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQL010000008.1 Clostridium sp. MSJ-4 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 138599 30 100.0 34 .............................. AATGGTTGCAATTATGGCTGTAGCACAATTGATA 138535 30 100.0 35 .............................. TATATAGAATTAGTTAAAGCAAATTTATCTACTTC 138470 30 100.0 36 .............................. ATCAGTAGGATTAGCAGTAATGGTTGATAATAACTC 138404 30 100.0 33 .............................. ATAATACTACTAGCTGGTACATAAGGTTTCTTG 138341 30 100.0 36 .............................. CATTCCTTATGCCATTTTTTTGAGCCACTCCATTTA 138275 30 100.0 37 .............................. ACCCTATCTATTTCTATAAGTCCCATGGCTTCTAACT 138208 30 100.0 35 .............................. TTGTGGAAAGGACAATTAATATATCCTTCCCTGTT 138143 30 100.0 34 .............................. ACAAAGTTTAACTGCTTTCCTGCAAAACTGAAAC 138079 30 100.0 36 .............................. TATGGGAATCACTTAATAATAAAATAATAAGTTGTC 138013 30 90.0 0 ................G...........GC | ========== ====== ====== ====== ============================== ===================================== ================== 10 30 99.0 35 GTTGAACCTTAACATATGATGTATTTAAAT # Left flank : AGAATGGCTTAACTACAGTGGTTGAACCTTAACATAGGATGTATTTAAATATAAAAAGTACATTTTATTGAAATGGAAGGAAGCTTTGTTGAACCTTAACATAGGATGTATTTAAATTACAACTTTACCGACTCCCCTGTTTCTTCTTCTACAAGTTGAACCTTAACATAGGATGTATTCAAGCAGAGAACCCAAATCTATGATTTGGTGTGAATCGCCTACTCCTTCCACAAAGAGAGAATGAGTTTCATTTTATAATCAGCTCTTGATGTCCAATCTCCTACTGGAACATAATCCTAAAAGCCTTCGATTTAGCATTATTTTTTTCCAACCGTCACTTAAATAAAACATGATTTAAACCATTGATGCTACAGGATTTAAACTGTATCTTCTATGAAATTTTCTAAAAGCACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAGGTTAAAGGATATAATAAAAATAAGGAATGGCTTAATTGCAGTG # Right flank : AGAGAACCCAAATCTGTGATCTGATGTGAGTCCCTTACTCTTCGAGCACTCCTTCCACAAAGAGAGAAGGAGTTTCATTTTTTATCAAAATTAATGAATCTATTTATCCCTGCGAAAATAATTGAAAAAGTCTCTATCTTCCCTCCCATTCTAACTTTCTAATCTCACCAACTCTTGATAATCAAAATTTCCTACTGTAATGTAATTCTTAAACCTTAAATTCAGCATTATATTTTTCCAACCGTCGCTTAAACAAAACATGATCTAACCCATTGAAAATACAAGCTTTAAGGAGCGTACCCTATCAACTTTTTAAAAAACACAAATCGGTTGGAAAAATTTCAAAGAAACCCTTTATTTTCAACAGGTTAAAGGCTATAATGAAAATAAGGAATGGCTTAACTGCAGTGGTTGAACCTTAACATGAGATGTATTTAAATGCAAACCCAGCTAGCATAACCATCATCATTTTGCCAGGTTGAACCTTAACATGAGATGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATATGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 17 139080-138918 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQL010000008.1 Clostridium sp. MSJ-4 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 139079 28 100.0 39 ............................ ATATAAAAAGTACATTTTATTGAAATGGAAGGAAGCTTT 139012 28 100.0 39 ............................ ATTACAACTTTACCGACTCCCCTGTTTCTTCTTCTACAA 138945 28 96.4 0 .........................C.. | ========== ====== ====== ====== ============================ ======================================= ================== 3 28 98.8 40 GTTGAACCTTAACATAGGATGTATTTAA # Left flank : AACCTTAACATAGGATGTATTTAAATATTAAATTATTTACAGCAAAAGGAATTTTATAACGTTGAACCTTAACATGAGATGTATTTAAGCAGAGAACCCAAATCTGCGATTTGGTGTGAGTCGCTTACTCCTTCGATGAAAAGAGAAGGAGTTTCATTTTCTTATCGAAATCAATGGTAATATTGGATATATTTAGTTCCTATCAGAGTAATCCAAAAATCTTAATCTCCCCTCCCTCTCTAACTTTCTAATCTAATCAAGTCTTGATAACCAAAACCTGCTACTGAAGCATCATTCCAGAAACCTTAAATTTAGCATTATTTTTTTCCAACCGTCACTTAAACAAAACATGATCTAAACCATTGAAAATTCACGTTTTAAAGGGTGTTTTTTATAAGATTTTAAAAAAACACAAATCGGTTGGAAAAATTTCAGAGAAACCCTTTATTTTGAACAGGTTAAAGGATATAATGAAAATAAAGAATGGCTTAACTACAGTG # Right flank : GCAGAGAACCCAAATCTATGATTTGGTGTGAATCGCCTACTCCTTCCACAAAGAGAGAATGAGTTTCATTTTATAATCAGCTCTTGATGTCCAATCTCCTACTGGAACATAATCCTAAAAGCCTTCGATTTAGCATTATTTTTTTCCAACCGTCACTTAAATAAAACATGATTTAAACCATTGATGCTACAGGATTTAAACTGTATCTTCTATGAAATTTTCTAAAAGCACAAATCGGTTGGAAAAATTTTAAACAAACCCTTTATTTTCAACAGGTTAAAGGATATAATAAAAATAAGGAATGGCTTAATTGCAGTGGTTGAACCTTAACATATGATGTATTTAAATAATGGTTGCAATTATGGCTGTAGCACAATTGATAGTTGAACCTTAACATATGATGTATTTAAATTATATAGAATTAGTTAAAGCAAATTTATCTACTTCGTTGAACCTTAACATATGATGTATTTAAATATCAGTAGGATTAGCAGTAATGG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 18 140475-140050 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQL010000008.1 Clostridium sp. MSJ-4 Scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 140474 30 93.3 36 A..A.......................... AGCTTAACTATACTATTATAAACTTTATTTATTGCA 140408 30 100.0 35 .............................. AATCCAAAGTCCATTCCAACTTTATAGATTGGTTT 140343 30 100.0 34 .............................. TTGATACTATTAAGTAATTTTTCATATTGTTCTT 140279 30 100.0 37 .............................. TCTTTCGTTAGGGGTATAAGTTGCTGAATAATAATAA 140212 30 100.0 35 .............................. TGTGTAAACTCTATTCTTCTCTCTTTTTCTGAACC 140147 30 100.0 38 .............................. AAGGTATTAGAAAAGGAAATTGATTACAAATTGGAAAA 140079 30 83.3 0 ...............GA........C..GC | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 96.7 36 GTTGAACCTTAACATAGGATGTATTTAAAT # Left flank : TGTTTTTTATAAAATTTTAAAAAAACACAAATCGGTTGGAAAAATTTCAGAGAAACCCTTTATTTTCAACACTTTAAAGGATATAATGAAAATAAGGAATGGCTTAATTGCAGTGGTTGAACCTTAAGCAGGCAACCCAAATCTGCGATTTGGTGTGAATCGCTTACTCCTTCGACAAAGAGAGAAGGAGTTTCATCAAAATCAATTGATAAATCTTT # Right flank : AGAGAACCCAAATCTATGATTTGGTGTGAATCGCTTACTCCTTCGATGAAAAGAGAAGGAGTTTCATTTTCTAATCAAAATTAATAAATCTATTTAGCTCCTGCCAAAGTAATCGAAAAAGTCTCAATCTCCCCTGTCCCTCTAATTTCCTAATTTCATCAACTCTCGATACCCAAAACCTCCTACTTGAATATAACTCTAAAAACCTTCAATTTAGCATTATATTTTTCCAACCGTCACTTAAACAAAACATGATCTAAACCATTAAAAATTCAAGGTTTAAAGGGTATTTTCTATAAACTTTTCAAAAAACACAAATCGGTTGGAAAAATTTTAAAGAAACCCTTTATTTTCAACAGGTTAAAGGATATAATGGAAATAAAGAATGGCTTAACTACAGTGGTTGAACCTCAACATAAGATGTATTTAAATTAATTAAATGTGACCTTATTATGTCTATCTAACTGTTGAACCTTAACATAGGATGTATTTAAATATTA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //