Array 1 2611-7140 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDIU010000040.1 Bacillus renqingensis strain REN2 contig40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2611 32 100.0 34 ................................ AGCAGTAAACCATGAATATGATTGGGCCGGGGTG 2677 32 100.0 34 ................................ GAATGCACTTGCTACGGTTCCTTCTGCGTGGGTA 2743 32 100.0 35 ................................ GTACATGAGATTGGCTCGCTCCGGGTACTTCCGGC 2810 32 100.0 34 ................................ CGCACCTTACTTTTCCCACCGTTGATAAAATCCG 2876 32 100.0 36 ................................ AACAGATTTCCATATGGGATGTATTGAAGTGATGGA 2944 32 100.0 33 ................................ TGCCGAATCTGCTTTTACAGGGTCATTATTTTT 3009 32 100.0 35 ................................ GGACTTGCGTGTGAGTGCCGGTATGATGCGAAATA 3076 32 100.0 34 ................................ TTTATCCAGTCGAAGGGAGGTGTTGACGTTTGAT 3142 32 100.0 34 ................................ CGTGTGACTGATGTCAATATTCGGTTTGCGGAAA 3208 32 100.0 34 ................................ TTTATCCAGTCGAAGGGAGGTGTTGACGTTTGAT 3274 32 100.0 34 ................................ CGTGTGACTTATGGCAATATACGGATTGCGGAAA 3340 32 100.0 34 ................................ TATCACAGGACAGTCTGCCTCGGGATTTAATCAG 3406 32 100.0 34 ................................ CGTGTGACTTATGGCAATATACGGATTGCGGAAA 3472 32 100.0 34 ................................ TATCACAGGACAGTCTGCATCGGGATTTAATCAG 3538 32 100.0 35 ................................ CTGCCGGGAGTGTAGCTGCAGGAGTACCAGCTCAG 3605 32 93.8 35 .........A.............T........ AGTGAAGAAAAAAAGCCTGAATGGTTGACTGGGAG 3672 32 100.0 35 ................................ CTGCCGGGAGTGTAGCAGCAGGAGTACCAGCTAAG 3739 32 100.0 35 ................................ AGTGAAGATAAAAAGCCTGAATGGTTGACTTGGAG 3806 32 100.0 35 ................................ AGTGAAGATAAAAAGCCTGAATGGTTGACTTGGAG 3873 32 100.0 35 ................................ AGTGAAGATAAAAAGCCTGAATGGTTGACTTGGAG 3940 32 100.0 35 ................................ AGTGAAGATAAAAAGCCTGAATGGTTGACTTGGAG 4007 32 100.0 35 ................................ AGTGAAGATAAAAAGCCTGAATGGTTGACTTGGAG 4074 32 100.0 34 ................................ AATATAAAAAAATTAAATCAGATGAAAAATTAAT 4140 32 100.0 34 ................................ AGGGAGTTTATGAAGGTGGTAGTAACTAATGGCT 4206 32 96.9 34 .....T.......................... AGGGATTTTATGAAGGTGGTAGGAACTAATGGCT 4272 32 100.0 34 ................................ AGGGATTTTATGAAGGTGGTAGTAACTAATGGCT 4338 32 100.0 34 ................................ ACGTGAAACACTTTGAGAGAAGGTAAGGTATATG 4404 32 100.0 34 ................................ ACGTGAAACAATATGAGAGAAGGTAAGGTATATT 4470 32 100.0 34 ................................ ACGTGAAACAATTTGAGAGAAGGTAAGGTATATG 4536 32 100.0 34 ................................ CTTTGCCTTTTCTACATGCGAATGAGTCATCTAT 4602 32 96.9 34 ..T............................. TTTTTTATGAATTTATCCATACAATGAACAGTAC 4668 32 100.0 34 ................................ AAAAAATCAACTGACAAAGAACGCTTAACTGCTG 4734 32 100.0 33 ................................ ATATTGGGCATGATGACACACACACACAATATA 4799 32 100.0 34 ................................ ACCTTCTTAGGAATAAATCTTGACCACCCATGAT 4865 32 100.0 35 ................................ TCTCGGCACTGTTAAATAGTTCGAGTGGTGGAATA 4932 32 100.0 35 ................................ TGTACCGTATAAAACCTTTGCTCTTAACACGTCAA 4999 32 100.0 36 ................................ ACTCAACTCTTTTTTGGCTAAGTCGTAGGCTTGGTC 5067 32 100.0 33 ................................ TTAGGGATAGGCATGTAAAACGTCACCAGAAGG 5132 32 100.0 34 ................................ TAATTCTTGGTCCATAAACTCATATATTCCATCT 5198 32 100.0 34 ................................ TCTCATCTGAACCATAGTGAACATAGCCCATTGG 5264 32 96.9 34 ............C................... TAATTCTTGGTCCATAAACTCATATATTCCATCT 5330 32 100.0 34 ................................ TCACATCTGAACCATAGTGACCATAGCCAATTGT 5396 32 100.0 34 ................................ TACCAATGAGGAAATTTGGACAATGCTAGGCGTT 5462 32 100.0 34 ................................ AACTCAAGTAACAGGCGCGGTATCCGAATTGACC 5528 32 100.0 34 ................................ AACCCAACATTTATAGCAAATGCGGTTTTACCCA 5594 32 100.0 34 ................................ CATTTGATATGGATAAGGTTACATTAACGTTATG 5660 32 100.0 34 ................................ CTTTGCCTTTTCTACATGCGAATGAGTCATCTAT 5726 32 96.9 34 ..T............................. TTTTTTATGAATTTATCCATACAATGAACAGTAC 5792 32 100.0 33 ................................ ATCGAGCGGGACCAAGAATTTATTGATAGTTTA 5857 32 100.0 34 ................................ AAGCATCCAAGGCGAAAGGAGCCGTTACATTTTC 5923 32 100.0 33 ................................ ATCCACTCATCGTTGCTATTTGATGCCGTTATA 5988 32 100.0 34 ................................ AAGCATCCAAGGCGAAAGGAGCCGTTACATTTTC 6054 32 100.0 33 ................................ ATCGAGTATTCGTTGCTATTTGATGCCGTTATA 6119 32 100.0 33 ................................ GCCTCCAATATGCTTCAATGTCCACAAAAATGG 6184 32 100.0 36 ................................ AATCGGTCGCCCATCACATCTGGCAACCAAGAAGAA 6252 32 100.0 33 ................................ GCCTCCAATCTGCTTCAATGTCCACAAAAATGG 6317 32 96.9 36 ...................G............ AATCGGTCGCCCATCACATCTGGCAACCAAGAAGAA 6385 32 100.0 34 ................................ TTTTTGCAGTAGGTGTTGTGAGCCAGCGAATATA 6451 32 100.0 34 ................................ TTTTTGCAGTAGGTGTTGTGAGCCAGCGAATCTA 6517 32 100.0 34 ................................ ATATCCTCGTGTTTTTGTTGTTCGCGTACTTCTC 6583 32 100.0 33 ................................ GACTCTTTTAGTAATGATTTCGTTTAACTCATC 6648 32 100.0 34 ................................ AATGGAGATGATACCGATGACTAAAATCCCCGTC 6714 32 100.0 34 ................................ CTGATGCAGGGTCTACGTGAGCCGCTTTCTTAAC 6780 32 100.0 34 ................................ ATGATGCAGGGTCTACGTGAGCCGCTTTCTTAAC 6846 32 96.9 34 .................G.............. AAACGTACCGATGTCGGGGTCGATTACTCGTACG 6912 32 100.0 34 ................................ AAACGTACCGATGTCGGGGTCGATTACTCGTACG 6978 32 100.0 34 ................................ AACTCAAGTAACAGGCGCGGTATCCGAATTGACC 7044 32 100.0 33 ................................ AACTGTGAAGTAAATGAATTGCTTTATTTAGAA 7109 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 69 32 99.6 34 GTCGCACCCTATATGGGTGCGTGGATTGAAAT # Left flank : TCCTGAACAGAAGGCGCTCTTTGCTTTCCGTTCAGGATCGGCTGGGCTAGGCGCTCCTTGAAAAAGCTATCGCTTTTCCTTCGTACGATGCTGATCCTGCCGAAGCCTTCCTTGTGGATCTAAACAATTCCTCGAAGTCGAAATTTTTATGCTTTTTTATCTTTCAAAATAAGTGCACCTTTCAGGTACGCATCACAAATAGCCGTAAATCGCGTTTTTTAACGCTCTTTCGCAGAAATGCTCCCTATAAAAGAGGAAGAATGAGAGAAAGATAAGGAAAGCAAATGGTTAAAGATACTAAAAACTAAAATGTAGCACGGTTAAACGTTAGTGCGAACCCCAAGTGTACATAAAAACCTTAAGGGATTCGCACTAAAATTTGAGCAGAATATGTAAAAATATGTGTTGGCAGAAAAGGAAAAGCAAGGTATCCTAAGAGAAAGTACGTCATTTAGCTTCATGGAAGGGGAATTTTTCCTAATTTTTAGGAGAAAACCGCT # Right flank : TGGGTTAATCCTCCCCCCGAGTTCATCTGAGGACGTCGCACCCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTATATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 33-396 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDIU010000041.1 Bacillus renqingensis strain REN2 contig41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 33 32 96.9 36 ......C......................... CAGTAGCAAACCCGTGGGGGCTTGACAGCGAATCGC 101 32 100.0 35 ................................ TGCTGTTACAATAAAAGGTGCATATGAAATTGAAA 168 32 100.0 34 ................................ GGCACCGATGTCATGGGTGATGAGGTACTGACCG 234 32 93.8 35 ......C...............T......... CAAAAATAAGTTGTCCTTGCTATATTCATAAAACA 301 30 90.6 34 ......C...........--............ CGGCTGGAAGCTAAGAAGGCTAGTCAAGAGGTCA 365 32 78.1 0 ......CA.....A..T...A.A.......T. | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 93.2 35 GTCGCATCCTATATGGGTGCGTGGATTGAAAT # Left flank : GGTTAATCCTCCCCCCGAGTTCATCTGAGGACG # Right flank : TTATAAAACTTTGAGAATTTAAAAAAGTAATAGGGGCCATAGGATAAAAGAGCCTTTAAATTGGAAAAGAGTGGATTTAGAAATGATAAAAGCTGTTATATTCGATTTTGATGGAACTTTGTTAAACAGGGATGAATCAGTAAGGAAGTTCATTAACAACCAGTATGACCGATTAAATAAGTGGTTAAGCCACATGTCAAAAGAGAAGTACACTACAAGATTTATCGAACTCGACAATCGTGGGTATGTTTGGAAAGATAAGGTATATCAACGATTAGTTGGTGAATTTGATATTACTGGGATAACTTGGGAGGAATTACTTCAAGATTACATAAGCCAATTTAAGTATAATTGTGTTCCTTTTCCTAATCTTAATAGAATGTTGGAAGAATTGAAAAATAGTGATCTTATGTTAGGAATGATTACAAACGGATATGGACAGTTCCAGATGGATAATATGAAGGCTTTAGATATAGATAAGTATTTTGATGCGATATTAA # Questionable array : NO Score: 8.61 # Score Detail : 1:0, 2:3, 3:3, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched TTCGCATCTTATATGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.90,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 121951-132385 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDIU010000008.1 Bacillus renqingensis strain REN2 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 121951 32 100.0 34 ................................ CAGAAATACCGTTTACTTTACCTTTATCGGTATA 122017 32 100.0 34 ................................ AAGTGTTTATGCAACGAAAAACTCCTATTATCCA 122083 32 100.0 34 ................................ CAGAAATACCGTTTACTTTACCTTTATCGGTATA 122149 32 100.0 34 ................................ CCGATATGTTGATACTTCGGGTTTAGGCACTGAA 122215 32 100.0 33 ................................ TCTTTGGTAACTTGGTAAATATCCTTCGTTTTC 122280 32 100.0 34 ................................ ACTCCACCCAACAAATTGGTTTGCTTCATCAGAC 122346 32 100.0 34 ................................ ACTCCACCCAACAACGTGGTTTGCGTCATCAGAC 122412 32 96.9 34 .....................G.......... TCCACGCACCCAATCCTCAAGAGCTTCTTTACAT 122478 32 100.0 34 ................................ TCCACGCACCCAATCCTCAAGAGCTTCTTTACAT 122544 32 100.0 34 ................................ ACTCAACAAATAAAGGTCATGAAATTAGGGTTGA 122610 32 100.0 35 ................................ TGGTGATGTTACACAAATTGCAATAGCCTTCACAG 122677 32 96.9 34 ..........G..................... ACTCAACAAATAAAGGTCATGAAATTAGGGTTGA 122743 32 100.0 35 ................................ TGGTGATGTTACACAAATTGCAATAGCCTTCACAG 122810 32 100.0 34 ................................ AATTCGATCTAAACGTGCTTTACTTGCAGATACA 122876 32 100.0 34 ................................ AACATTTTAGGCTTAAAAGTAAAAGACAACCTAG 122942 32 100.0 33 ................................ ATGGTATCTATACCTCCTGATTCATTTGATAAC 123007 32 100.0 34 ................................ TTTGCCCATCCGGGCATGCGCTCCAGCACATCGT 123073 32 100.0 35 ................................ GTCAGCTGGAGCGGTGCGGGATAAAGGGGCAAGCA 123140 32 100.0 34 ................................ TTTGCCCATCCGGGCATGCGCGCCAGCACATCGT 123206 32 100.0 35 ................................ CTCAAATCCACCTACCAAAACCTTAAACTCCACTG 123273 32 100.0 35 ................................ CTCTAATCCACCTACCAAATCCTTAAACTCCACTG 123340 32 100.0 35 ................................ CTCTAATCCACCTACCAAATCCTTAAACTCCACTG 123407 32 100.0 35 ................................ GTCAGCTGTAGCGGTGCGGGATAAAGGGGCAAGCA 123474 32 100.0 36 ................................ CACCAACCTTGCTACTATCGTGATAAATTGCTTGTT 123542 32 100.0 35 ................................ TGTTAAATCTAATTTTAGATCATATACTTGGGCAG 123609 32 100.0 36 ................................ CACCAACCTAGCTACTATCGTGATAAATTGCTTGTT 123677 32 96.9 35 ..............................C. TGTTAAATCTAATCTAAGATCATATACTTGGGCAG 123744 32 100.0 34 ................................ CTATAGCGGTGATTGACCATGAAGAATGAAGATG 123810 32 100.0 34 ................................ GTAAGTCTCCCGTATTGACTCGTGGGGGCTTATA 123876 32 100.0 36 ................................ TCTTTACCAAACTGCTTAATAACCCTCTTAGCTGTT 123944 32 100.0 34 ................................ GTAAGTCTCCCGTATTGACTCGTGGGGGCTTATA 124010 32 96.9 36 .............A.................. TCTTTACCAATCTGCTTAATAACCCTCTTAGCTGTT 124078 32 100.0 35 ................................ CCCAGTTACTACACGAGTTTGGTTTGTTTGATTTG 124145 32 100.0 35 ................................ CCCAGATACTACACGAGTTTGGTTTGTTTGAGTTG 124212 32 96.9 34 .....................G.......... ATTGCTTGGTACTTCTTCACGCTAGTCTTGGACA 124278 32 100.0 34 ................................ ATGGCTTGGTACTTCTTCACGCTAGTCTTGGACA 124344 32 100.0 34 ................................ ATTCTGTCGCCGATTTTTGTGAGGCGGGTTCCTG 124410 32 100.0 35 ................................ CGTTGCCGGCGCCCCCGCCTGCTCGCCGAAGTCCT 124477 32 100.0 34 ................................ TAATTCATCCAAAAAATCGTTGTCCAAAACCATC 124543 32 96.9 34 .....................G.......... CGGCGATTGCCAGCTAATGAGCCCCCGACAAAAC 124609 32 100.0 34 ................................ CGGCGATTGCCAGCTAATGAGCCCCCGACAAAAC 124675 32 100.0 34 ................................ TTCTTCCTCCAAAAAATCGTTGTCCAAAACCATC 124741 32 100.0 34 ................................ TATAGACTCGGTGAGGTACTCACTCAATGACGAA 124807 32 100.0 35 ................................ CCTTTCCAATTCCTCGTCCATGAATTGATGGTGGG 124874 32 100.0 35 ................................ ACAAAGTGACCGGATTTGCTTATCCAGCATCCGAG 124941 32 100.0 35 ................................ CCTTTCCAAGTCCTCGTCCATGAATTGATGGTGGG 125008 32 96.9 35 .......G........................ ACAAAGGGACCGGATTTGCTTATCCAGCATCCGAG 125075 32 100.0 35 ................................ AAAATCTTCGGCTATTAAAGCAATGTAGCAATCAT 125142 32 100.0 34 ................................ TATGTATGGCAGATTAAAAAAGACAACATGATAA 125208 32 100.0 34 ................................ TACCCCCCTGTTAGTATACGGGGGTAGTACCTCC 125274 32 100.0 34 ................................ TGCTATCAATGCTATGTAACAATCATTATCCGTT 125340 32 100.0 34 ................................ TGTTAAACCAAATTCAGCTAGCAACTCTTCAAAA 125406 32 100.0 34 ................................ TATTGGTGCTATTACGGCAAGTAGTATAGTTGTG 125472 32 100.0 35 ................................ ATCAGGCTTAGAATTATTCCCACCATCACCATCGC 125539 32 100.0 33 ................................ AAAGCTATTTTCTTGTTCAATTTCCGGTCGTTC 125604 32 100.0 34 ................................ CGAATGACGTTGTAAAAGTCACCAAAATGAATCA 125670 32 100.0 34 ................................ AAACTCTTTATAGTTACGAACCCATGACCCCATA 125736 32 100.0 34 ................................ ACCTACCATTGCAACGGTAGGGCTGTCAATAATA 125802 32 100.0 34 ................................ GCAGATATTGATTTAATTACAGAATCAGGCAGAG 125868 32 100.0 33 ................................ AATGTAGTTGAACAACTAACCCAACTTATCAAG 125933 32 100.0 34 ................................ ATGGTCACTTATCAAAGGCGATAAGGGTGACACC 125999 32 100.0 35 ................................ CATACTTTGTAGATACTTTCAGGCACCTCAAAGCT 126066 32 100.0 35 ................................ CATACTTTGTAGATACTTTCAGGCACCTCACAGCT 126133 32 96.9 34 .............G.................. GATTGAGTTTGAAGCGGCTGACTTATATACACGT 126199 32 100.0 34 ................................ TTTTTTCGTGGAACTATACTACGTATATAGGAGG 126265 32 100.0 34 ................................ GATTGAGTTTGAAGCGGCTGACTTATATACACGG 126331 32 100.0 35 ................................ CATACTTTGTAGATACTTTCAGGCACCTCAAAGCT 126398 32 100.0 34 ................................ GATTGAGTTTGAAGCGGCTGACTTATATACACGT 126464 32 100.0 35 ................................ CGTTTTTTAGACCACCGGATAAAACGTATACGGTA 126531 32 100.0 34 ................................ TCGATGAATGGGTATATGGTGCAAAAGAGAGTAG 126597 32 100.0 35 ................................ CAAGTCCGCTAATGTTGCTCCGTCACCTTTAAGAG 126664 32 100.0 34 ................................ CCATCCCATTACATGAATAGCAACTAAACGATCA 126730 32 100.0 34 ................................ TTTATTTGGCGAAGAAGGAGAACTACCGGAAGAC 126796 32 100.0 33 ................................ CGGCACCAAAAGTATATCATCGAAGTGTCCGAA 126861 32 100.0 33 ................................ AACGTCCGTTTTGCGTCGAGATTAGCCAGTTTT 126926 32 100.0 37 ................................ CGACGGAGAACCTATCGGGCGATTTGCACGGCTACTC 126995 32 96.9 33 .....................G.......... AGCCGATTCTAGGACCGTTTTGGGCGCTTTGTA 127060 32 100.0 33 ................................ AGCCGATTCTAGTACCGTTTTGGGCGCTTTGTA 127125 32 100.0 37 ................................ CGACGGAGAAACTATCGGGCGATTTGCACGGCTACTC 127194 32 100.0 34 ................................ CGTTCTGAGATGTTAGAGGCGCTGGGATTCGGCG 127260 32 100.0 35 ................................ GACATCCCGGTGGGTGCCGACCAATTGCGATTCTA 127327 32 100.0 34 ................................ CGTTCTGAGATGTTAGAGGCGCTGGGATTCGGCG 127393 32 100.0 35 ................................ GACATCCCGTTGGGTGCCGACCAATTGCGATTCTA 127460 32 100.0 35 ................................ GATGACACTCTGCATCGATTGCTGTCGGTACTGAT 127527 32 100.0 35 ................................ AGCAGGATAAAAAACCGCAATTTCAAGCGAAATAA 127594 32 93.8 35 ......AA........................ TCTTACGCACCAAAGCCAGGCGGCGAGGAAGCAAT 127661 32 100.0 35 ................................ AGCAGGATATAAAACCGCAATTTCAAGCGATATAA 127728 32 100.0 35 ................................ TCTTACGCACCAAAGCCAGGCGGCGAGGAAGCAAT 127795 32 100.0 34 ................................ TTCTAACCCAATTTGACCATCCGCACCGTAATCC 127861 32 100.0 33 ................................ ACTTTTGCCACCAACAGTGAGTTATTTTTCATC 127926 32 96.9 34 ..............................C. TTCTAACCCAATTTGACCATCCGCTCCGTAATCC 127992 32 96.9 33 .....................A.......... GGATATAATTCACTATAGTCAAAGGAGGTGAAA 128057 32 96.9 33 .............A.................. ACTTTTGCCACCAACAGTGAGTTATTTTTCATC 128122 32 100.0 33 ................................ GGATATAATTAACTATAGTCAAAGGAGGTGAAA 128187 32 100.0 34 ................................ ATAAAGTCTTTTGCCTCAACAATTGCATCATTTG 128253 32 100.0 35 ................................ AAGGTGCGGGAATGGCAAAAATCAGCAAATTGGCC 128320 32 100.0 35 ................................ CAAACTCCGCAACAAATCCGTTTGGCAGCCATCCT 128387 32 96.9 33 .............G.................. TATACATGATAACACTTCCTTATTTTTAGTAGC 128452 32 100.0 35 ................................ CAAACTCAGCAACAAATCCGTTTGGCAGCCATCCT 128519 32 100.0 33 ................................ TATACATGATAACACTTCCTTATTTTTAGTAGC 128584 32 100.0 34 ................................ ATACACCACACCCGAAACTGCGATAGAAAAAGTA 128650 32 96.9 32 .................G.............. ATATACTACCGGTTCTTGGGCGAGTCACTTTC 128714 32 100.0 34 ................................ ATACACCACACCCGAAAATGCGATAGAAAAAGTA 128780 32 100.0 32 ................................ ATATACTACCGGTTATTGGGCGAGTCACTTTC 128844 32 100.0 33 ................................ AAGACATCGTCACTGTAGGCGACGGAGAAGTAA 128909 32 100.0 36 ................................ TCTAGTACCAATGCGAGCCTCATCTTTTCCAACCGG 128977 32 100.0 34 ................................ TACAACCTTCGGAGCGATACGCAATCCTAAGTAA 129043 32 93.8 35 C........................G...... ATTAAAGTGCAAAGAAAGCAGAATCCCGAAAGGGG 129110 32 93.8 36 .......A......................C. TCTAGTACCAATGCGAGCCTCATCTTTTCCAACCGG 129178 32 100.0 34 ................................ TACAACCTTCGGAGCGATACGCAATCCTAAGTAA 129244 32 100.0 35 ................................ ATTAAAGTGCAAAGAAAGCAGAATCCCGAAAGGTG 129311 32 100.0 34 ................................ TACCAAATTGTCAAAAGATGATTGTCTCGATCTG 129377 32 100.0 34 ................................ ATTTTTCGAAGCTTACCTCCTTGTTTAATGACAC 129443 32 100.0 35 ................................ CCCCATACCTGGATACACACAAAGTCGCTGTCGTC 129510 32 100.0 33 ................................ GTATCTAAATCATACAAACCGCCTTTTTCCTTT 129575 32 100.0 34 ................................ ATCGAATATATCGGTCTATTATTTTCATCATTTC 129641 32 96.9 34 ...............................G TGCCGTCTGCACCCTTAGGGCCGTGGATGCCTTG 129707 32 93.8 34 .......A.................G...... TGCCGTCTGCACCCTGAGGGCCTTGGAAGCCTTG 129773 32 100.0 34 ................................ TGCCGTCTGCACCCTTAGGGCCTTGGATGCCTTG 129839 32 100.0 35 ................................ CTTTCGCAGCCCGAGAAGGGGTGGCGCGAACCATC 129906 32 96.9 34 .A.............................. TGCCGTCTGCACCCTTCGGGCCTTGGATGCCTTG 129972 32 100.0 35 ................................ CTTTAGCAGCCCGAGAAGGGGTGGCGCGAACCATC 130039 32 100.0 34 ................................ TGGTTCGATAAGGTTTTCTGCCGTTGCTTTGCTG 130105 32 100.0 34 ................................ TGGTTCGATAAGGTTTTCTGCCGTTGCTTTGCTG 130171 32 100.0 34 ................................ CAATATTTTAATCATGCAACCATAGCTGGCATGG 130237 32 100.0 35 ................................ CGTTGCACCTGGTGGGACAGTATCTAATCGGAAAA 130304 32 96.9 34 ..........G..................... AACCATATTTGGTTCGTGATTTGCCTCTATGACA 130370 32 100.0 35 ................................ CGTTGCACCTGTTGGGACAGTATCTAATCGGAAAA 130437 32 100.0 34 ................................ AACCATATTTGGTTCGTGATTTGCCTCTATGACA 130503 32 100.0 34 ................................ TGCTTACCCTGACATGACTCACACTTAGTTAGAC 130569 32 100.0 34 ................................ TCATAGCTGTTATTATTTGACGCATTTTTGGGTC 130635 32 100.0 34 ................................ CAACTGTTTATGTGTATCTAATCTTGTGGCCAAT 130701 32 100.0 34 ................................ CAACTGTTTATGTGTCTCTAATCTTGTGGCCAAT 130767 32 100.0 34 ................................ CAACTGTTTATGTGTCTCTAATCTTGTGGCCAAT 130833 32 100.0 34 ................................ ACAAAGGTTGCCAGTGGGGTTGTAGTAAAGCCGA 130899 32 100.0 36 ................................ CAATTTCCCGGCGATGGCATCCACACGATACAATTG 130967 32 100.0 34 ................................ CGGGGTGAAGTATCTTTTGCATTTTGTCTTATGC 131033 32 96.9 35 .........................G...... GCAAAAATCACAATCGTTGAATACATCCGCCAATC 131100 32 100.0 35 ................................ GCAAAAATCACAATCGTTGAATACATCCGCCAAAC 131167 32 100.0 34 ................................ AGGGGTGAAGTATCTTTTGCATTTTGTATTATGC 131233 32 100.0 34 ................................ TAGCACACTTGCCGAAACACGAGCAGGAACAATT 131299 32 93.8 34 ...............T.......T........ CGTCGATCAAGATGCCCTCGGTGCTGCCGATGAT 131365 32 100.0 34 ................................ AGGGGTGAAGTATCTTTTGCATTTTGTATTATGC 131431 32 100.0 34 ................................ TAGCACAATTGCCGAAACACGAGCAGGAACAATT 131497 32 100.0 34 ................................ CGTCGATCAAGATGCCCTCGGTGCTGACGTTGAT 131563 32 100.0 35 ................................ TCCAATATGGCTTAGTGGTTGCAATAATGTATAAA 131630 32 100.0 33 ................................ CGACTCGTCAATTTGGATGGCTCGGGCGCTGAT 131695 32 100.0 34 ................................ CCGATATCATCCGGTGACGAATGTTCGGTTGTAA 131761 32 100.0 35 ................................ TCGCAGAACTGGACGAATCGGACTATAATGATACG 131828 32 96.9 35 .A.............................. TCGCAGAACTGGACGAATCGGACTATAATGATACG 131895 32 100.0 35 ................................ TCGCAGAAATGGACGAATCGGACTATAATGATACG 131962 32 100.0 34 ................................ TTATTGGCTCCCACGCTATGGCAAGGACAATGGT 132028 32 100.0 32 ................................ AATTCGGAAATGGAGGGATTGGATTTTGGACC 132092 32 100.0 34 ................................ TTATTGGCTCCCACGCTATGGTAAGGACAATGGT 132158 32 100.0 32 ................................ AATTCGGAAATGGAGGGATTGGATTTTGGACC 132222 32 100.0 34 ................................ CCACCCCTTTTGAATGGCAATCGATAGGAAGAAA 132288 32 96.9 34 ....................A........... ACCTCCAATAAAATGCATCACTTTATAGAAGTTG 132354 32 96.9 0 ....T........................... | ========== ====== ====== ====== ================================ ===================================== ================== 158 32 99.4 34 GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Left flank : TTAGATGAATACCCACCATTTTTATGGAAGTAGGTGTTTCATTTGTTAGTATTAATTACCTATGATGTAAGCACTGTTAGCAGTGGAGGACAAAGAAGACTGAGAAAAGTATCGAAGGAATGCCAAAATTTTGGTCAGCGAGTGCAAAATTCCGTCTTTGAATGTATTGTAGATGCAACGCAATTTACTGTTTTAAAACAAAGACTTACTGATATTATTGATAAGGATCATGATAGTCTTAGATTTTATCAGCTTGGTAATAATTATAAGACAAAAGTTGAGCATATCGGTGTAAAGGAATCTATCGATTTAGAGGCTCCTTTGATTTTTTAGTGCGAATGTATAGCGCACATGGATTTCCAGCACCTTTCGCACCTAAATTTACTGTCTTTGATTGTTATGTTTTGTCGATTTATGTAATAGTTCTTTAATTTTTAAAGAAAATGGCGGATTTTTAATCAAAAACCACCCTTTTTAATTGTTTTTGATTGAAAATCGCT # Right flank : TGAAGTAAATCCAAAATGTTTTGAATTCCCTCTTTATTGAAAATAATATATATCTAAAGTTAAGCAGTAAATCCCCCTGGAGCAAAAAATGAATAAACTCTACCTTTTAGATAAAACTAAAGGGAAAATATCCAGTGAAGGGGGTTTTAAGTGGTGACCATTAAACCAACCAAAATAGAAACGATAAAGGCGAAAAATTCCAATGAAAAATTAACAGCGGCGGAGATGGGGAAACTTTGGGCAACCTATACTGGGAATACGATGGCCAAGTGTGTTCTAACATATTTTCTGAAACATGTTGAGGATCAAGATATCAAAAAGGTTGTAAAAAATGCCCTGACTTTATGCGAAACGCTTATAGAAAATATTAAAGAAATATTTATTCAAGAAGACTTTCCTATACCAATTGGGTTTACCAAAGAAGATGTGGACTTGGGTGCGCCGAGGCTGTTTTCTGATGAGTTCTATCTTCACTACTTGAGATATACATCAAAAGCAGG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.70,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //