Array 1 129939-128848 **** Predicted by CRISPRDetect 2.4 *** >NZ_BASU01000001.1 Streptococcus constellatus subsp. constellatus SK53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 129938 36 100.0 30 .................................... AAATGTAATATCGCTACTACAAATGACTGT 129872 36 100.0 30 .................................... CTTTGATTACATTTTGAAGGCGCAAAATAA 129806 36 100.0 30 .................................... TGCTCTATATCTTGAGCAAGCCGGATGACT 129740 36 100.0 30 .................................... TTCATGTTGATAATTACTTCGACGATGTTT 129674 36 100.0 30 .................................... TAAAACGAAACCATGCAAATATCCTTATTC 129608 36 100.0 30 .................................... AGCAAGTCTTGCCAACCATTGGCTACCCTA 129542 36 100.0 30 .................................... GGTTGGATGTGGACTTGGTCAATGGACTGG 129476 36 100.0 30 .................................... AACATTGCAAGAAATCTTAAAAGAGATGAC 129410 36 100.0 30 .................................... TGGTGATGGCTCTGGAGCTAAGTCACGCTT 129344 36 100.0 30 .................................... TTCAGTAAATGAAGATTCTATAAAATCTTC 129278 36 100.0 30 .................................... CTTACGTAGACGGTATTTCTTCGCATTTAT 129212 36 100.0 30 .................................... AAAGCTCCAGCAATGATTGTCTTTCACGCT 129146 36 100.0 30 .................................... ATTTATCGTTATCGGTATGATAGCAGGCTA 129080 36 100.0 30 .................................... CGTCCTGTGCAACTCTATGCTCTTAACTGA 129014 36 100.0 29 .................................... TGGTGGTAAAGGAAAATCTTCATCTTTCG 128949 36 100.0 30 .................................... ATGAAACATCACTAGCATCTGGCGGTACAA 128883 36 97.2 0 ..........................C......... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : ACAGTTGAATGAAAAGCCTGAAGTGAAATCTATGTTAGAAAAATTAGTTGCAACTATTACAGAACTAATTGCTTTTGAATGTTTAGAAAACGAGCTGGATTTAGAGTATGATGAAATAACAATTTTGGAATTGATTGATGCTTTAGGTGTAAAAATTGAAACACTGAGTGATACTGTTTTTGAGAAAAGTTTAGAGGTTGTTCAGGTGTTTAAATATCTTTCTAAAAAGAAACTGCTTGTCTTTGTGAATGTGTCATGTTATCTGTCTGAACATAAACTAGCTAAATTGGTGGAATATATTCAACTTCATAATATAAATGTACTGTTTGTTGAACCAAGAAAAGTATACGACTTCCCTCAATATGTAGTGGATGAGGACTATTTCTTATCTTGTGAGAATATGGTATAATATTAACAAATATAAGGAATCGTTCGAGCTGAAGTCTAGCTGGGACGAATGGCGCGATTATGAAATTTCGAGACAAAAATTGGTCCACGAG # Right flank : TAACCTATTCTTTTCTTCCAAATTCCCAAAATTCCCAAAAATTCAGACACAAACCATCTGATTGTAAAGCTTGCAAATTTTTTTAATCGTGCTATAATATTTCTTAGAGACATACCGCTGGTTGGAATTTTTTAGAGAGCGCGTGGGGCTGGAAAGCGTGTAGAGGAAGGCAGTTGGGACTACTCTAAAGTAACTTTTATGCAAACATAAAACGGTGGCTACGTTAGAGCCAATCAGAGGTGTCAACAGTTTTTGTTGTACATAAATGAAGGTGGAACCACGTTGCGACGTCCTTTTATGGATGCCGCTTTTTATTTTGTCAGAAGGAGGAAGAATGATGCTTTATATGATTGGCGGATCGCCTTGCAGCGGGAAGTCAACAATTGCTTCACTTCTTGCTAGACAGTATCAGCTGCTTCATATCAAGCTGGATAATTTGGTGGACGAGATGATGAGTCAAGCAAGTGTAGATTCACAGCCGATTTGCCTTCTTAGACAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 7797-9083 **** Predicted by CRISPRDetect 2.4 *** >NZ_BASU01000031.1 Streptococcus constellatus subsp. constellatus SK53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 7797 32 100.0 34 ................................ AGGAACGGCCACTCGACGTTGGCCCATTTTGACT 7863 32 100.0 35 ................................ GTTGCATAAAAGCTGTTATTACCTGTCAAATCCAG 7930 32 100.0 34 ................................ ATGGACGAAAATGGCGACAAGTTACTAGCTAAGA 7996 32 100.0 33 ................................ TCTAGCAAATATAGCCCATGGCAGTCTGACTTT 8061 32 100.0 33 ................................ CAAAATGCTTGTGAGTGCACCTTGCATCAATTT 8126 32 100.0 34 ................................ ATCGATAAAACGTTTTTGCCAATCTTCCATTTTT 8192 32 100.0 34 ................................ ACTCATGGATTGGGATAGCGACAACGTGATTACA 8258 32 100.0 33 ................................ TACAAACAAAAATTAAAGAAAACAGTCTACACA 8323 32 100.0 34 ................................ AGACAAGAGGAGCCTTAAACAATGCGCATGATGT 8389 32 100.0 34 ................................ ATAAAGCTAGTGTGTACGATGTGATTGAGTTATT 8455 32 100.0 34 ................................ TTCGACATTTAATCACTCCCCGTAAATAGCAACA 8521 32 100.0 34 ................................ AGACCTGTATAGCTCGTTTGAAATGATGTATTTC 8587 32 100.0 34 ................................ TATTTCCAAACTCTGTTATTTTACTAAAAAATGT 8653 32 96.9 34 ........T....................... AATAAAAGTTTTGGAAAAACTATCTTTAAATTTA 8719 32 100.0 34 ................................ ATCTTGATTGGATATTAAATTTAAAGACCGATTT 8785 32 100.0 36 ................................ ATTAAAAATATCTATTTTTTGTAACGTTGGATTTTT 8853 32 100.0 35 ................................ AAAATTTGCGAAAATGCTTGCCTTTATCGGCGAAG 8920 32 100.0 35 ................................ TGAAATAATAAAATAAATATCTTGTTTTTTCAAAG 8987 32 100.0 33 ................................ CGGATCGCCTAGCTCATAAACTCCCGCTGCTGA 9052 32 87.5 0 ......................AA...A.T.. | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 99.2 34 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : CAAAGCAATTCGTGGAGAATTAGAATCCTATCCGCCATTTTTAATCTAGGAGTAAATTTATGATGGTTTTAGTAACTTATGATGTCAATACGGAAACTTCCGCAGGCAGGAAACGTCTGAGGCATGTCGCAAAACTTTGTGTTGATTATGGTCAGCGTGTGCAAAATTCCGTTTTTGAATGCTCAGTAACTCCGGCTGAATTTGTAGAAATAAAAAATAAACTGTTGACAATCATTGACCAAGAATCAGATAGTATACGATTTTACTTGCTTGGTAAAAATTGGCAAAATCGTGTAGAAACCCTTGGTCGAAATGACAGTTATGACCCTGATGTCGGGATATTACTTTTATAAAAACTTGTGTGCGAACCTAGGTTGCACATCAAAACCTAGGACATTCGCGCATAAAAACAGAATGATAGTGGCAAAAATCCAGTTTTTATTAAATGAAATAGCTCAATAGATTCTTAGATATAGTCACAAACGGTGCAACCATGCGCT # Right flank : TACACCTAAACTCTTGTTTGCTTTCAAAAACATGCTAAATTTTTCCGAGATATCTTGGCTTTGGATGATGCCAAAATTTTGCAGAAATGTCTCGAGTTTTTGACTGCATTTTGCGAAACTCTCTTACTTGATGGAGAAAATGACCTGTCTAGTGAGGAACTGTACCAAAAATTAGGTTTGGATAAATAGCGGAGTAAACTAACATCTGAGGACAGAAAGGTTCCAACTATACATATCTGAAGTAGAGTACCTGAAATAATAAAGTTCCCTATATTTCCAACAAATAAGTCAACATTACTTCAACAAAAAAACAGCTCAATAGTAAAGCTGTTTTTTTTACCTATTTGAAAGTTTAAAATTGTGATTGGTCTTGTATTTACGGATGATTAGACGTTTAAACTTCAACATTATAAAGATCTGTTGATAAATAGCGTTCGCCATTATCTGGAGCAAGAGCTAGAATTTTTTTACCTGTTCCTAGTTTTTTGGCTACTTCAAGT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //