Array 1 15-247 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEJA01000217.1 Staphylococcus pseudintermedius strain ST496 8 77_S35_L001_R1_001_contig_217, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15 36 100.0 29 .................................... GCTAAAAGTCAATGTTACTTCATTCCTTA 80 36 100.0 29 .................................... TCACAAACCGTTTATGAAAAAAATACATC 145 36 100.0 30 .................................... CGAAAGTAAAGATAGTATGCAAGGTGCAAG 211 36 86.1 0 ..........................AC.TC.T... | C [244] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 96.5 29 GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Left flank : TTCTTCTACTTCGAG # Right flank : CCTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGTAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCGCATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 2012-1188 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEJA01000385.1 Staphylococcus pseudintermedius strain ST496 8 77_S35_L001_R1_001_contig_385, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2011 36 100.0 29 .................................... AAGTCATCAGCCGAAAACGCTTCTGATGT 1946 36 100.0 29 .................................... GGAGAAAGCTTTGTGTCGACAGATACTAA 1881 36 100.0 30 .................................... AGAATACGCCGTCGTCTTACCGCTTGCAGT 1815 36 100.0 29 .................................... CATTAACTGCTTTGTCAAACTCACTAATT 1750 36 100.0 30 .................................... GGAAAATGTGGTAATGAAGGAGGATTTTGA 1684 36 100.0 30 .................................... AGAGAAGAAATTGTGGCAATACGGTATTGT 1618 36 100.0 31 .................................... CGTCGATTTCGACATAATCAATCGCCTTATG 1551 36 100.0 29 .................................... AATATAAAAGGCGCTAAGAGGCGTTATAT 1486 36 100.0 30 .................................... TGAGCCTTTATCATTTAGAACAGCTAGAGT 1420 36 97.2 30 ............................A....... ACAATACTTGATGCAGGCAATAACAAGCTG 1354 36 97.2 30 ............................A....... ACAATACTTGATGCAGGCAATAACAAGCTG 1288 36 97.2 29 ............................A....... GGACAACAACAAGATATTGCTCAAGCCTA 1223 36 97.2 0 ............................A....... | ========== ====== ====== ====== ==================================== =============================== ================== 13 36 99.1 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : | # Right flank : TTTCAATGTAATAATATCATAAGTATTCACAATTATCAAATGATTTGCGATAATATTAATAAATAAATTAAATGGAGGTAAGTGTAATGGGTCGAAAACCTTATATTTTAAGTCTCGATATTGGTACGGGAAGCGTCGGATATGCGTGTATGGATAAAGGTTTTAATGTTTTAAAATACCATGATAAAGATGCGTTAGGTGTATATTTATTTGACGGTGCACTAACAGCTCAAGAACGGAGACAGTTTAGGACATCAAGAAGAAGAAAAAATCGTCGGATTAAACGTTTAGGACTACTTCAAGAATTATTAGCGCCATTAGTTCAAAACCCTAACTTTTATCAATTTCAAAGACAGTTTGCGTGGAAAAATGACAACATGGATTTTAAAAATAAGAGTCTTTCTGAGGTTTTAAGTTTCTTAGGCTATGAGTCAAAAAAATACCCAACGATTTATCATTTGCAAGAAGCACTTTTATTAAAAGACGAAAAATTTGACCCT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //