Array 1 163727-162354 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRDU01000004.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000202 CFSAN000202_contig0003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 163726 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 163665 29 100.0 32 ............................. GGTGACGGCTTTGTCCGACCGCATCCGGGCCA 163604 29 100.0 32 ............................. ACGAGGGACGGCTGGCGCTGGAGAGATTTTCA 163543 29 100.0 32 ............................. ACCCGCTCCGCGCAGCTCGCAGCGTAATTCGA 163482 29 100.0 32 ............................. ACACATATACTCTCCCCGTTTGCATCATCAGG 163421 29 100.0 32 ............................. ATCGCTAAATCTAAAATGCCCTCGTACAGTGA 163360 29 100.0 32 ............................. CGCAATAAACGGCATCAGCTATAGCTTGATAG 163299 29 100.0 32 ............................. AAACTGCGTTTGAGTTCCAGCCGCTTTTTCCT 163238 29 100.0 32 ............................. GCCGACGACAAAATCACGGTCACAACGGGTAT 163177 29 100.0 32 ............................. GATTCGACTTTATAGGGATTGATTAGAGGAGA 163116 29 100.0 32 ............................. TTATCTATGCCATAGTGACCCCACGTTACATA 163055 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 162994 29 100.0 32 ............................. ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT 162933 29 100.0 32 ............................. CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC 162872 29 100.0 32 ............................. GATGCCAAACTGGTCAAGCTGGCGATTATCAA 162811 29 100.0 32 ............................. ACCATTACTGACGTGATGGCGGCGCAAGGGTT 162750 29 100.0 32 ............................. GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC 162689 29 100.0 33 ............................. TGTGAACGTCGGATAAATACCGATTCCGCCTGC 162627 29 100.0 32 ............................. AGTTTCTTGTGACGCTTCTATTCAGGACAAAA 162566 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 162505 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 162444 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 162383 29 96.6 0 ...............A............. | A [162356] ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180974-179849 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRDU01000004.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000202 CFSAN000202_contig0003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 180973 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 180912 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 180851 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 180790 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 180729 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 180668 29 100.0 32 ............................. CAGGCTGGTGCCATAGTTTTGAGTTTCTACCG 180607 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 180546 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 180485 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 180424 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 180363 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 180302 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 180241 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 180180 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 180119 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 180058 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 179997 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 179936 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 179876 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //