Array 1 11978-13421 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORM01000025.1 Cohnella xylanilytica strain J19TS2 sequence025, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================================================================== ================== 11978 33 100.0 35 ................................. TGCCGCGTCCGCCGCTTGCATGGCCGCAAGTTGTT 12046 33 100.0 36 ................................. TCGCTAGCCCGTCTATCCCGGTTTGGGTTTGTCTAC 12115 33 100.0 35 ................................. CAAGTTGTCGCGGTGAAAGGAAAACGCGCTGTACG 12183 33 100.0 33 ................................. ACGACTAGCGTGATTAAAGTAGCAAGGTTCGAA 12249 33 100.0 33 ................................. TCTATCCTGTTATCCATCTTGGTTGTCCTCCAA 12315 33 100.0 37 ................................. CGTAATCTCAGCGATCTGACAACAATCGTATTCCATC 12385 33 100.0 36 ................................. TTCCTCCTCTCTATATACCAGCAGAGTGATAACAGT 12454 33 100.0 36 ................................. CGGCCTCTCTCAAGGCAAAATACAAGCTATTCAAGG 12523 33 100.0 36 ................................. CGCATGGACTCCCGCAGATCCGCAAGAGTAATTGTC 12592 33 100.0 34 ................................. CTGTGTCACGATTCCTGATTCAAAGTCGTCTTGC 12659 33 100.0 32 ................................. CGATCGGCGGGCAGATCACGACGGACACCGAA 12724 33 100.0 32 ................................. CGATCGGCGGGCAGATCACGACGGACACCGAA 12789 33 100.0 36 ................................. CGGCTGAGTTAGTAGTGGCACCAGAATTCCTTCGAA 12858 33 97.0 38 ...............A................. TCGACGTCCACGGAGACGATCGTCATCCCGGGGCCAAC 12929 33 100.0 38 ................................. TGCAATATGCCTCGGATCACGGCATCGAGGGGCTGTCG 13000 33 100.0 38 ................................. TTTACGGAATGATGCAATGTCTGCGAAGTCGTCCGGAC 13071 33 97.0 83 ........................T........ ATCGGCTGTGCGCCAGCGTGTCGTGAGGGTCTGATGCATAGATTGAAATTGGAATCCATCCGCCAGTCGGTCCATGTCTCGAA 13187 33 87.9 36 .............A.....ATA........... TGCACGATCAGCAGGGACTGCCGGTTGGCAACCTGC 13256 33 90.9 30 .A.......T...G................... GAGAGTTGCGTTGATGTCCGCGTCGGTGTG 13319 33 90.9 33 .....G..G.C...................... CGGCAGATTCCGGTGTTGCTACTCGCTGAGGAT T,C [13323,13333] 13387 33 84.8 0 .............G.......TCA........A | GT [13416] ========== ====== ====== ====== ================================= =================================================================================== ================== 21 33 97.5 37 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : AAGGCGGTCGTTTTTTCACTTGACGATGCGTATACCCCAAAACCATCCAAGCCAAGGCGCGCTGGTTTGCCCGGGATGCTGAAGGCGCTGGGCGAAGCAGAGGTGCAAGTCACGTTCGGCATGCTGCCTCTTGCGCGGCATTTGCGACTATTTGCAAAGAAAACAGGGTAAGCTTTTAGCGGCGGACATTTGTCCATCGCTTTTCTGGTTGCAAAAAGGAATTTCACTCCCGTGAAACTTGAATTGTTGAACCATGCCGAATTGCCCAGCAAGAGGCGAGGATCTGACCATTAAAAATGTGTATGTACCACGAACCCCGATTTTGTGGAACACGTGAACCGATACGTGAGGGATGTTGAGCAAGGAAGACCCGTTTAGCGGATTTTTCGAAGAATTTAGGAAGTTGCATTTATGTTTCTGTTAATTTTGGAATTTGTTTGTTTTAGAGTGCTATTCCTTCTGAATGGGATCTTTCGGACCCATTCAGAAGGAGAATCGCT # Right flank : AAAGCCGACTCCATTGAGCCGGCCATTCCATCTTTATAAGAATGTGCATAGGTAACAACTGCCTCAATCTAGGTTGGAAATAGGGGAAGTCAGTTCTTACCCCTGCCCGATCGCCTTAAACGAAGCCTCGGCCGCATCCAGCGTGGCGTCGATGTCTGCGTCGGTGTGCGCGGTCGTCAGGAACCAAGCCTCGTACTTCGACGGCGCGAGGTAGACGCCGCGCTCCAGCATCTCGCGGAAAAAGCGGGCGAACAGCTCGCCGTCCGTATCCTGCGCCTCGTCGTAGTTCGTGACCGGGTGGTCGCAGAAATGGGTCGAGAACGCGCCGACGATGCGGTTGATCGTGAGCGGCACGCCGTACCGCGCGGCCGACTCGGCCAAGCCGCCCGTCAGCCGCGTCGCCAGCGACTCCATGCGCGCGTACACGCCCGGCTCGCGCAGCACCTCGAGGCAAGCGATGCCCGCGGCGACGGAGGCGGGATTGCCCGCCATCGTGCCGG # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.40,-9.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 905-597 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORM01000078.1 Cohnella xylanilytica strain J19TS2 sequence078, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 904 33 100.0 33 ................................. ACTGTAGTCGATGAAGACGAGAGCGGAGTTTAT 838 33 100.0 37 ................................. GAAAATAGGGGGGGTACTAACTATTTGTAAGTGACGT 768 33 100.0 35 ................................. TACACATCCTAAGTGTGAGCAAAACGGACATCTCA 700 33 100.0 38 ................................. CGATTTCGCCCGGCGTGAACCCAAGATCAAGGTCCATG 629 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 5 33 100.0 36 GTCGCATCCCGCGAGGGATGCGTGGATTGAAAT # Left flank : AGAGGCAGACGGCGGCCGACCTAACGGGCATTCGCCGGGAGTTCTGGGGCGATGAGGCCCCGTTGCCGTACACGGTCGTCTTTGGCCATACGCCGACGTTCAAGATGGGCGCCGAGCCCGGCGAGCTCTGGTTCGGCCGCGACCGGATCGGCATCGACACCGGCGCCAAGCATGGTTGCCGGCTGACGCTCGTCGACCTGACCAACCGGCTCAGCTATTCGTGCTCGACAGGGGCCGCCGAACGGTACTCCGACTTTCGGCAAAGTTCTTGGGGGTAGAATCAGGCGTTTAAAGGTGCATTTACAAGAAGAAGGGGTCATTCGAAAAAAGGTGCGAATGTGAAGCTCACATGATTTTCCGGGGACATTCGCACCGAAATAAAAGAGGTCTTTACCTATCACGCCTTCGTTTTGTATGATTTTGGTAGAGGTTCTTGAAGCTTTAGCTAGTTTTTAGGCTATAAAAAGGCATATTTGGGCCTGTAGTAGCTAAAAAACGCT # Right flank : TCTGACGACGATCTTCCGTTTTAGAGAGCGTAACATCTGAGAGCAAGAAAATGCTTTAAGACCTCAGTAAAATCAAGGGGTTTTAAAGCATTTTAACTGTGTAATGGTAATCTTCATTTACGACCAGCATCCACGGTTTATTAAGATCGCATGATGTTGAGTAAAGTGTGTAATACGTTATGACAGTCAATGTAGTCTAGTGATGATGACCATCCTTATTTCAAGATGTGGGTGCAGCCCCGTAGTGAGAAGTTGGGTGTGGGTAAGTCGTAAGACTTATCCACACCCAACTTTGAACTAGGGGATAGCCAGAGAAAGCTTATTACGTTTGACCAATATGCATAATGAAAGGAACGAGAGTATAACAATGGCATTTGCACAAAGAAATGACGAAGAACGTGGCGAAAGAAAGTTTGCTCCACGTAGAGGTGGCAAAGGTAAACGTAGAAAAGTTTGCTACTTTACAGTTAATAACTCAACTTTCGCACTTAGAAAATCAA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCGAGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.80,-7.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9699-8793 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORM01000068.1 Cohnella xylanilytica strain J19TS2 sequence068, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 9698 32 100.0 34 ................................ GCCCTGGGTCGATTCGGTCGGGTCGATGCAGATC 9632 32 100.0 36 ................................ TCTATCCCTCCTCAGAATCGGACGACGCCGCGGATC 9564 32 100.0 37 ................................ GCCAGCGTGGACGAGTACCATCTCCACCCGACGAACC 9495 32 100.0 38 ................................ GCTCGCTCGTTGTGGCGACTTATCGTGATGGTGATAAT 9425 32 100.0 36 ................................ CGTTCGAAGAAAGCGGCCCGGACGGCCGTCGACCGC 9357 32 100.0 36 ................................ CAGGAGCAGGCTTCGGCCGGCGTCCACGGACTTCTC 9289 32 100.0 35 ................................ AGAATGCACCAAGCATAACTAAGAGGTTGACTGGC 9222 32 96.9 35 ............A................... CGAGTCATCTCTCGCCTCGGCCAACTCCTTTTTAA 9155 32 100.0 38 ................................ GACCGAAAGGCGCAAATCATGTACGACCTGCTACGCAA 9085 32 100.0 33 ................................ ATCGCGGGGTTCGCTAGCAGCGAAGCCGCCAGC 9020 32 96.9 33 ........C....................... CATCAGTCATCCGCCCAATCTTCGCCGGCCGAA 8955 32 90.6 34 ........C..T.T.................. GCTAACGGCTTCCTAGCGGCGGCGGCCGCGGGCA 8889 32 90.6 33 ........C...........A..........C ACCTTCGACGGCTTTACGAGGAATATTTCGTCC 8824 32 78.1 0 .......TC.TA.T........A.T....... | ========== ====== ====== ====== ================================ ====================================== ================== 14 32 96.6 35 GTCGCTCCTCACGCGGGAGCGTGGATTGAAAT # Left flank : TGCGAATGGTCCGATAAAGTATGAGGAGCCGCCCAACTGCCGTCATCGTTTTTACGTACATGCGCGATAAGTTCCGTAATCATGCCAACATGCTCTCCTTTTAGGAGCGTTCCTTGTAAAGTTCGACATAATTTTGGAAAAACCTTCATGATTCAATTAGATAATCGTTATTTTGGGCTCAAAAATGAAAAACAATCGTAAGCAACCAGGTAAATGTGACTAAAACTTAAGTCTTGTTGCCTGAGTATATAGTCGTAGACAAGGCTCGTTATATAGAGGTGAGAGACTTCAGATTTTCGACAAATTGCAAGCCTGGGTATGCTATGATAGTGGTGCGAACCCCAAGCGCACATGATTTTCCTGGGAGATTCGCACCTCTTGATTTTACTGGGTTGTCGGGAATTTTATAGAAATATGAATACTTTAACATGGTTACATCTTGGCGATTCGCGAAATTGGGCTCGCCAGCCCTTGTGGCACAAGGGCCCGTGCTACCCGCT # Right flank : CGCTATTGCCCATTTCGGGTCCCCTTCTACTTTTTCTGTGGTTGCTGCTCTCAGGAGTTCAAATAGAAATCTCCAAAACAACATATCATTCGGGAAAGTGATTTCAAACAATTTCCTATTTGAGAATGAAAGGGACGGCTTTCATACAACCATTCCATTGACTGTATCATCTCAAATTCTATCTTCATCTGGCTTTCCTGCTCTAAACAATCGTACCACAACTAGCGTTCCGGCTCGATCAGCCCCTTGTCTTCATTCATCACCGCCAGTTTCTCGGCGCCCTCCCTCACATCATGGCCTCGTCGATCACGGCTATTTTCCGCTCCACAGCGACAATGTCGGCCTCCAGCTTCCATATACTCCGTCCACCTTTCCAACCCTATACCGCCACTCAAGTCGCCCGTCTTGCGAATACTGACGTGCCGTGAAATAGGATGTCGTATTAGGACCGTTACTGTTGTTCCGCACGATAATGAAGATGCGCAAGCCTTGTTCAGATC # Questionable array : NO Score: 9.09 # Score Detail : 1:0, 2:3, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCACGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCACGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 15982-19100 **** Predicted by CRISPRDetect 2.4 *** >NZ_BORM01000068.1 Cohnella xylanilytica strain J19TS2 sequence068, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 15982 32 100.0 36 ................................ TCCATAGCAAGCGCGCCCAGCTTTTTATCGTCGATC 16050 32 100.0 36 ................................ TGAGGAGTCAGCCAAACCTTGTGGTGGACGATCCTC 16118 32 100.0 34 ................................ GGATCGTACTTAGCAAGGCATTCAAACATGCGTT 16184 32 100.0 36 ................................ AATAAGTCGGCGTACTTCCGGCCAGAGGTGACGGTC 16252 32 100.0 32 ................................ TTCAGCCAGTAGCGCGGAAACCTATCCATGAC 16316 32 100.0 37 ................................ GACTACGATGTTATATCCGCAAGCCTCGCCATCGTGG 16385 32 100.0 30 ................................ GTCGTGTCGTCCCGATCGATCGTCACCTGC 16447 32 100.0 35 ................................ AAGGCCACAAGCCGGGCAACGATAGACATAGCGAG 16514 32 100.0 34 ................................ CTTACCCGATGGGCAATCTTTGCGAGTCTTGCTT 16580 32 100.0 34 ................................ GGTGCCCATTCGGAGTAATCCAGCGACTCCTCCA 16646 32 100.0 37 ................................ CCGATCGGGTGGACCGACTTAAAGCCCTCGGAAATGC 16715 32 100.0 37 ................................ GATGTTGGTCAGTCATAACCACTAAAGAGAGGATATG 16784 32 100.0 33 ................................ ACAATCGCAAGAAAGTGAAGACGCGCAAGAATC 16849 32 100.0 36 ................................ TCTCCATGCACTTTTGAGTGTCGCGGCGATGTACTC 16917 32 100.0 36 ................................ ACCCCTTTAACGAGGAATTGGAGAAGAAGATTGCGT 16985 32 100.0 37 ................................ TGATCGAGGATTATCCCGGTGGTGGTATAGTGGTGGC 17054 32 100.0 36 ................................ CTTGTGAAGTCAACTTGTACGATCCCTTCGTCCATC 17122 32 100.0 36 ................................ TGCATCTAAGGATGTATGCTGCCCGGTATGCTTGTA 17190 32 100.0 34 ................................ GCTGCAGCCTTCGCCAGTTGCCAAGCTCTCGTCA 17256 32 100.0 36 ................................ TTCCTCTGTGTAATCCTCACCCTCAAAATGGGCCGC 17324 32 100.0 36 ................................ CCACGAGGAGCCGAAGCATTACCACTTCTCGAACGA 17392 32 100.0 36 ................................ TCGAACGAGGCGGACATGATTAACCGAATCGTCCTC 17460 32 100.0 34 ................................ CGGGAGGCGAACGGAATCGCCCGCGGAGAGTCGA 17526 32 100.0 37 ................................ GTATCGAATCGAGAATACAGTCCTTCCGAACGACCGG 17595 32 100.0 33 ................................ CGATGAAACCAGAGAAGATCCGGAGATGGGCGA 17660 32 100.0 33 ................................ CGATGAAACCAGAGAAGATCCGGAGATGGGCGA 17725 32 100.0 35 ................................ CGCGATGTCACCACCAACCACGTATGGCCTCCGAG 17792 32 100.0 34 ................................ CCTGCCGCCGACGAAGTCTTCCAGGCGCAGGTCA 17858 32 100.0 34 ................................ TGGAGCACGACGCTGCTCTCCGACCGGCAGTTCA 17924 32 96.9 33 ..............T................. GTCACGTAGCTGCCCGACTCCGAATTTACGACC 17989 32 100.0 35 ................................ GCGAGATCCTCGCCCAAGTTCCTTGTAAACGAGAA 18056 32 100.0 34 ................................ CACAGGTGTCTCAGGAACGGACGCTTTTGCGGCT 18122 32 100.0 35 ................................ ATCTCGAACACCCCTGTACTCATAATCTTCCTGCA 18189 32 96.9 35 .......T........................ ATGAACTTCGGCAGATCAATCGCCAGCTCTTCGAC 18256 32 96.9 34 .......T........................ TGTTAAACTAGTATAAAGGGGGTGCTAGTTTTGG 18322 32 96.9 33 .......T........................ CCGAATGGCCGTAACGTGTGGGGTAAAGGCTTT 18387 32 100.0 34 ................................ TGAGGGGGGCAGCCCAAAAATGATGCACTTGCTC 18453 32 100.0 38 ................................ ATATAATAGTTTGTGTCGAAGCCGGCGGCCCCGAGCGG 18523 32 100.0 39 ................................ TTGTAGGCAGGCACGACCTGGATATGGATGCCGCGGCGA 18594 32 100.0 35 ................................ GATAAGCGGCTGTATGCGAGTGCGCGGAAATTCTT 18661 32 96.9 36 .......T........................ TTCAATCGTTTCAGAAAGTCCACTCGCGTCCATGGC 18729 32 100.0 41 ................................ TTTAAGCATCCTCTTACCTCCGATTCGCTAATTGAATTACC 18802 32 100.0 37 ................................ AGACAAGGGGATGGAGCCGGGGAAAGCGGGCCTAAGG 18871 32 100.0 32 ................................ TGCGGCAGCTGCGTAGATATTGGCCGAGCTGG 18935 32 96.9 34 ................A............... ACGGGATACGCTTCGTGGAAGACGACGGAATGAC 19001 32 100.0 36 ................................ GAAAGGTACTGGGGTGGTAGGCATGATGTATCTCGG 19069 32 96.9 0 ...........T.................... | ========== ====== ====== ====== ================================ ========================================= ================== 47 32 99.5 35 GTCGCTCCCCACGCGGGAGCGTGGATTGAAAT # Left flank : CGCGCATGGCTTTGTCTCGGCCCCTCTTGCGAATCAAACCGGTTTCTCAGAAATTGACCTGGAACTTCTGTGGGAATCGCTCGAAAATTTGTTTGAACATGATCGTTCCGCTGCCCGCGGACTAATGGGAACAAGAAAACTCATCATTTTTGAGCACTCGTCCAAGATGGGAAATATCTCGGTACAGAAGCTTTTTGACGCGGTTACTGTGAAACGGATTGATGAGAATAAGCCAGCTAGAGAATTCAGCGATTACATTATTGCAGTAGATCAAGAAATGATTCCTCCAAGTGTCAAACTGATTGAAAGGTAAATTGTATCGTTCATCCGTGGTGCGAATCCCAAGCGCACATGAATTTCCCGGGGGATTCGCACCACTTGATTTTACTGGGTTTGAGGGATTTTAACGAAAAACTGAGACGTTTTTGGGGACTATGTAACGGCGATTCGCGAAATCGGGCCCGCGAGCCCTTGTGGCACTAGGGCTTACGGTGCCCGCT # Right flank : TTTTCGCCAAGAGGCAAACTTGGTCAGGCCGCAAAGTCGCCTCTCTCGGGAGTGTGAATTGAATTAACATTTTTATCACAACATTTTTTCTACGACTGCTCATTCTCTAACCATCCATATGGTTGAGAAAACGTAACGGACACTACGAACGTTTAGGTTAACGGACACATTGCGCTTATTTCGCAAATAACGCCTGTATTGACCGTCTGTGGAGCCATTAAGGGCCGTGGTGACAGAAATTTTGCTAAGAACATAACACGGTTGAAAAATTTTATAAAAGAAAGGGGCTCCTATACCGTAGTAAGTAACGACAACCCTACGGAAAGGTCTACTAGCGTACCGAAAGTTATAGTCGTACGTCAAGTATTAGGGGGGAGCGTAAGCTCTATTTAAGTTTCATAACTAGGCTTGTTCATGCTCTTGATCGTGCGGAACAACGGTAACTGCCCTAATTGTGACATGACATCAGGGAATTTTTGACGGATCTGCAGTTTGGCATC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCACGCGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCACGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.60,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //