Array 1 630363-630586 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036345.1 Anaerostipes caccae L1-92 strain DSM 14662 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 630363 29 100.0 35 ............................. ATATCAGAGTTTTCAACATCGCTGACAGGGATCAG 630427 29 100.0 37 ............................. TTGTGACCCCTCCATCCCCTATTACAATGCCTTGGAG 630493 29 100.0 36 ............................. GAGGTTATAGACGATAAAACAGTCGTCTATATTACG 630558 29 86.2 0 .....................CC.A...G | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 96.5 36 ATAAACAATAACAAGAGTTGTATTGAAAT # Left flank : TTCTTTTCCCTGGCGCATTACTGCACCAAGATATTTTATCATGGACAGGCGATTTCACAAGATGCCTTGGACACTTATTGTTAGGCGAAAAACAAAAATAAAACGGAGGTAATAAATATGAATAATATAATAGAAAAAGCACAGGCAATGGACCAGTTTGGCAACAACCTTCCCGATGTAGAGCAGGGGGGGCAAATAGAGCTTGGTGAGATCTGGGACGGCACAGGAGACGTGCCGCAGGAGTCTTGGAGCATCCAGATCACGGACAGTGATTGGATCAATTACTGCTTTGAGATCGTAGAGAAAAACAGTGATCCACTCAAGACTGTAATCAGGATCACGGACATAGAACTGATATAATGTATAGGCCCGGCAGGTAGCCGGGCATGGCGTAAAAGCATGGGATATAATAGCTGTAAGACCCTATAAGAAGCGGGTAGTTTGTCGTAAATTTGTCGGCAGTGTCTTACAGACCGCATAAAACCGTGGTTCCGTGTTTC # Right flank : GCATTAGTGAAGTTCAATAAAACAATATTCTGCTTAAAATTAACAATCTTTCTTTATCCCAAAGATCCGGTTCCCCGGATCTTTATTACATAGTTACAAGGATACCTGATTTTTGACAGAGATCTTTTTTTGACCAGTTACAGCCACGATGATCACCAGTTGCGGAATAGGATCCCGTTAAGGTATAATGATATATATGACCAGCGGATATAGATGCAATACAAAAGAGGGATTTGAATGTTAAACCAACGACAAATTGAAATTTTATTAGAATTCTGCAATCACTCCGATGAGTTCCTGACTGCGTCTCATTTTGCAAAGAAACTGGACGTGAGTCTCAGGACCGTTCAGGGGGACATGAAAGTGATCCGAAAGGAACTTGCGGATGAGACATGTGCGGAATTGGTTTCCAAGGCTTCCAAGGGAAGCTGTATCCAAGTGAAAAACTATGATGAGTTTTCCGCATTCGTGAATTCTCTGTACCAGCAGTACACAACAGT # Questionable array : NO Score: 8.68 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAACAATAACAAGAGTTGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 887174-887401 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036345.1 Anaerostipes caccae L1-92 strain DSM 14662 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 887174 30 100.0 34 .............................. CTGCCATTGCGCAGGGAATTATAAACTCTATTCC 887238 30 100.0 38 .............................. ACCCCATAAGATTCACTTGTCCCATAAGATTCGTTTTG 887306 30 100.0 35 .............................. AATGATACCTGCCTCTGAAATAAAAAAACGTTTTT 887371 30 80.0 0 ...............AA...A.T...GC.. | A [887396] ========== ====== ====== ====== ============================== ====================================== ================== 4 30 95.0 36 GATAAATAAAAACAAGTGTTGTATTGAAAT # Left flank : GGATTACGACGATGAAACCATACAAAAGTGGCTGGATAAATTCTACTGGCGGTTCTTCAGCCAGCAGTTTAAGCGCTCTTGCCTGCCGGACGGGCCGAAGGTGGGAAGTGTAGCAGTGTCTCCAAGAGGGGATTTGAGAATGCCGAGCGATGCCAGCGTGAATATCTGGCAGAAGTCATAGATAAGGATTGGAGCTGTGCAGAGTTTTGCATGGCTCCTTTTTTTGTTATCAGATAAAATCTTGCTATGGAATGGAAAGATCTCCAGGCAGGTTGGAAAATCGCATTTAGTGCACAAAGTGGGTAAGTCTCTCAAAGAGGAGGATTTTTCCCAATCTCTAAAAGCAGATGAATGCCGGAAAGCCGCATAGAATAAGGGAGGGAAGCTATTTTGGAAAAGATAAGAGAAAAATTTATGGCGGTTGGGAAAAAATTGAGAAAACGTTGATTTTATGCGGAAAGGCGATTATAATGAAAACAAAGAATGGCGGAAAAACGTTG # Right flank : TACAGAAAACAAACAGATTTGTGCTGTTGTTGTAATATGATTCATTCAATGAATGAACAGAATTCTGTGGAAATATCCATACACAGAGTTCTTATTTTTTTGTCTTTATTTCTGTGCAATCTTTATTAAGTTTTATTTTCTTTTATTTTTACTTGCAAAATGAAAGTCAATATGATAATATACAAGTACAAAGTAAAAGATAATAAAAGAAAACAAAATGGAGGAGTCAGAAATGAAGTTAAGTGCAGATCAAATAGCAGGCATGGTAGACCACACAAATCTCAAAGCCTTTGCCGATGAAGCAATGTTCGAAAAATTATGCAGCGAAGCCAGAGAATATGGTTTTAAGATGGTAGCCATAAATCCTGCACAGACAGAGCGGTGCAAACGCCTTTTGGAAGGATGTCCGGTTCACGTAGGGGCAGCCATAGGATTTCCGCTGGGACAGACAACACTGGAATGTAAAGTATTTGAGACAAAGGATGCCATCGAAAAAGGCG # Questionable array : NO Score: 5.61 # Score Detail : 1:0, 2:0, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATAAAAACAAGTGTTGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 950327-950752 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036345.1 Anaerostipes caccae L1-92 strain DSM 14662 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 950327 30 96.7 36 ......T....................... ACTGCTTTTCCATTCCATTCTGTCATGATACGCCCT 950393 30 96.7 36 ......T....................... TACACTAGTCTGCAGTGATAACTATCCAGCGATCAC 950459 30 100.0 35 .............................. GGGTTTTTAGAAGATCTTGCAAAAGATCTTGTAAA 950524 30 100.0 36 .............................. TTATTATCAAACGCCCCCAGCCAGTACATTCTCCCT 950590 30 100.0 37 .............................. CACATGAATTTCGGTCGTGCACATAAATTGCGGCACC 950657 30 96.7 36 ....C......................... TGATGAATTACTACACCTCCAATAATACTTGATTCC 950723 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 98.6 36 GATAAACAAAAACAAGAGTTGTATTGAAAT # Left flank : CGCAAAAGCCAGGCGGTGGTTTTGATTGGGGTGACTTATCAGCAAAGAGGGCTGAATGAGTGCTGTGGTTGGTGTAATCAGACAAACTGCCAGGGCTGCAGGGAGAACCAAAGCGTCTGTGTATTTGATCCGGTGGATCTGGGAATCGCACTGGGATCGGCAGTTAGTGTGGCATCCTTAAACCATGTGGACAACCGGATCATGTTTTCTGTTGGAAAAGGAGCACTATCCTTGGGGATGCTGGGACCGGAAGTGAAGATAATCCTTGGAATTCCATTGGCTGCGGCGGGAAAAGCGCCATATTTTGACCGAAAATAACGATGTTTTCCCAACCGGCTAAATTTAAAAAGTGGTCCAAAACGTTGATTTTACAGGGGTTGCAGAGGATTTTTAGGATTAGTTTTGAAAATGGACGGCCGGTTGGGAAAAAAGCTGGAAAACGTTGAATATATCTAGGTTTAGAGATATAATGGAAATTGAAGAATGGCTTAAATACGTTG # Right flank : TACACTTACCTCCTCTTTTGTCAAAGGACGTCCACAGATAAATAAAAATAAAATGAATAATAGATTGCTTATCTTAATTTGAATTGTTTGAAAGTACTATGAAATGTTGTATTATTTTGAAAAATATAGTAAAATAGAACAATAGAGTGGTTTGTGTATAAAAGCTACTAATGAATCATTCCCTCCAGGGCAATCGTTACGATAGGTACTATCAGCATGTATACGATACGAGGGTGCATACAAAAGAAAGGGGTGGGGCAGTGGATTTGAAAGTTTTTGAAATTCGGCTAAAAGTATATCTGTTAGAAGATATACCGGTAGAAGCAGTTCAAAAGAAGACAGCCGCACTAATTGACATTTGTCTGAGCAGAGACGAAGCACTTCTGAAATTTCATGAGACGAATCAATTTAAGAATTATTCTTTCGGAAATCCATATCCATTGGAAAAGGACAAAATTTATAAAAAGGATAAGGTGTATGTCATAACAATCCGCACCATT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAACAAAAACAAGAGTTGTATTGAAAT # Alternate repeat : GATAAATAAAAACAAGAGTTGTATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 4 960358-961166 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036345.1 Anaerostipes caccae L1-92 strain DSM 14662 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 960358 30 100.0 34 .............................. TCCTCCTATCTGCCGTTCAAAGAGCTGTTTTTCC 960422 30 100.0 35 .............................. TTGACCCACTGTTCTCCGGCCAGCCAGGCGATCAC 960487 30 96.7 34 .........................A.... GATATGATGTTTATTGGTCGGATTACCGATAATA 960551 30 100.0 35 .............................. TCCAATATTTGATACTCAAGGCCATCTACATTTAT 960616 30 100.0 34 .............................. ATTCAATCCGTTGGCTCCTCTCTGACAAGGAAAG 960680 30 100.0 36 .............................. TATAATCAAAAGATAGCAATTCAAACGTATCAAACG 960746 30 100.0 36 .............................. GCCTTGCACATTGTTTTATTTATATCTTTCTTAACT 960812 30 100.0 34 .............................. TGGCATCGTTCACGGCCTCCTCAGCGTCTTCCTT 960876 30 100.0 35 .............................. TAGCCTCTGCGCCCTGAGACGCTCTTTTGGAACTG 960941 30 100.0 36 .............................. ATTCCTTCCCATCCTTTGTATATTTCAGGGAGAAAT 961007 30 100.0 35 .............................. TCGAGCCAGGGAACGCATTTGGCAGCACAACGAAA 961072 30 100.0 35 .............................. TCTGCAGTTGCATAAGGATCATCTTTTGCCACATA 961137 30 80.0 0 ...A..C............CA..C....G. | ========== ====== ====== ====== ============================== ==================================== ================== 13 30 98.2 35 GATTAATAAAAACATTAGATGTATTGAAAT # Left flank : GGGCACACCGTGTTTTATACTCTTCGGGTGGACGCGCTTTGCGCGATAAGGTATGACATTTTCCACATGATTTTCGTTCGGCCCTTAGAATGCCTCACTCCAATCATATGGAAAATGGACGTAATGTCCGTTGGAGAAGGCCCGCTGTCAAAAAAGGTGCCGCTTTTCGAAAGTTATTTACCGCTATTGGAGGAGCGCATTTCAAAAGCACGACGGAAATAGTGGTGAATAACTCATAATATATGGGGAGATCAGTGGATCGTCCTGCTGAAGATACTGTAAATTAAGTCTTGAGATTGAGTTTAATTTCACAAAAAGGAAGGCGTTTTCCCAACCTTGTTTTTATTAGAAATGGAAGAAAGCTCGGTTTTATGCGGGTTAGGAGAAGTTATGGAAGGAAATTGAAATTATAGAGCGGAGGTTGGGAAAATATCTAAAAAACGTTGAAAAATAAGGGTTTATAGAGTATCATGAAAAATAGAAATGGCTTAAAAGCGTTG # Right flank : TTCTTTTCTATTACATAAATTTTCTACAATTTTATCTTTAAAATATAGGTGAAGAATTTTTTTGGAATTTGTTGAGAAATCAGGATGATTGTAGTAAAATAGTAGATAGAATGGTTAAGGATTTGGGGATTCAGATATAAATATGATGAATGAGAATGTCTTACAGAGATATGGGGACCAATTCGCTTCAAAATGGGATAAGAAAAAGAATAGTAAATTCATTAGAATAGCTGAAGATAGCTGTTCTTACAAGTGTGCTTTGCATAGATATAATTAGACAGAAGTTGTAAATATACAATTTCTGTCTTTTTCTTTGGTTAATAAAGGGGATGAGAGTCAGTTCAACAAAATGGGGTATGGTAATTATAACTTGATTCTTAGTAATGTAGAGATAAATTTGTATGAAAAGAAAATGTAAATATTAAACAAAAAGGAGAAACAGCTGTTATAACAACGCTGAGTATTGATTATGAGATTTCTAGTATTTTATCGAAATGAAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAATAAAAACATTAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 5 2514178-2513627 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036345.1 Anaerostipes caccae L1-92 strain DSM 14662 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2514177 31 100.0 33 ............................... CTGAATTAACGGTGGCCACGTTGGTAACATCCT 2514113 31 100.0 33 ............................... CCAAACCGCCGTCGTCCATCCGTGACGCACCAT 2514049 31 100.0 35 ............................... TCGAGGAGTCACTTTTTTCCCCGTAAGAGTAGAAA 2513983 31 100.0 34 ............................... TTTTGGAGTAATTGAAATCTTGGCCAGCCACAGC 2513918 31 100.0 35 ............................... CTGAACCCGGAATCTTTATTTCCCCTGTGAGAGTA 2513852 31 100.0 33 ............................... CACTTTAGAGATTTAGTTAAAAAAGGAGTATAA 2513788 31 96.8 35 ..............................A TTAAGCCATCAATCCAATACTGCGGCTGAACGCCG 2513722 31 96.8 34 ..............................A ATTGGATTTGTTTTGCCCAAGATATTTGTTTTTC 2513657 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 9 31 99.3 34 GATAAACAGTAACAAGAGTTGTATTGAAATT # Left flank : AAGGCTCTTTAAAGAGTGTGATCTCACGATAAGGTATTTAGAATACTATGATTGAAATATAAAAAATATAAACTTGATTAAGTTGGTAAAGTATAAGTTGTTTCCAGTATATACCTGAGATTGGCAGAAGTAAATAGGGTTGGGATAAACTTGATTAAGTTTGTGAAGTATAACGAAAAAAAGAGAAAATAACTGTGAGTATTGACAGTAGCATTTTCTGCATGATTTCCGTTCGGCTCTTAGAATGCCTCACTCCAATCATGCAGAAAAACTACACCGTATTTCATACCCTTCGGGTGGCGCGCTCTGCGCGATAAGGTATACTGATTTTCCAACCGATAAAATTGATAATTACATACAAACCGCAGAGGATAGCCATTTGAAGGGGTATTGGAGAAAAATGTGAAAAAATTGATGACGGTTGGGAAATATTTAGAGAAACGTTGATTTTATCAGGAAAACTGGATATAATGAAATGGAAGAATGGCTTAAAAGCGTTG # Right flank : TGATTGCAAGATCAAACCGTTTCATTACAGCCAGATAAACAGTAACAGAAATAAGATATACCCTGATAGTTAGGCAAAGAAAAGGAGTCAATGTCTAACTGCCAGGGTATTTTTCTGTATGTCATGACATTTTGACCAGTTTTACGACTTGCTGCCTCAGAGATGTAAGATTTTCTAACATTCAGCAAAGTCTCTGCGGCGGCCCATTTGGAACTATCTAACGATAGTTTTTTAGCACTATTGGAGGAACGCATTTCAAAGCGTGACGGAAATAGTGCTAAAAAACCCATACCTTATCGCACATAGCGCTCCTACCCGGAGGGTATAAATTTATCTAGTTTTTGTATACATCTGGTTTTTCTCAAAAAACTCTTTCGCTCTTTCTTATTTCTATGTTACAGTATAAATTAGTGTTTTCTGTCCGGAAACGAAAAATTGTGTCGGGCAGGGAGTGATTTTAACGAATGACGATGGAGGAGATTGAATTGGTAACGATAGCA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAACAGTAACAAGAGTTGTATTGAAATT # Alternate repeat : GATAAACAGTAACAAGAGTTGTATTGAAATA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 6 3218364-3217756 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036345.1 Anaerostipes caccae L1-92 strain DSM 14662 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 3218363 24 100.0 41 ........................ AAGTACGATTGCTTCATGAACGAGGACAGATACTTCAAGTA 3218298 24 95.8 40 .....................T.. GAGAGAGTTGCCTTTAAGGAGTCAAACCGAAGTTTCAATC 3218234 24 95.8 43 .....................T.. GAGGAAAGAAGACCGGAAGAATAAGCTGGTATGCAACCACATC 3218167 24 95.8 43 .....................T.. GAGTCGTTTGAATTGTTTTATCAGCACATCCACAGCATTTATC 3218100 24 100.0 40 ........................ AAGTGGTTTCTAAGTTGTGTGTGATATATATAGACCCGTA 3218036 24 95.8 41 ..T..................... AAGTAGCGTGTTTAGAATTTCCGGTATCGTCTCAGCAAGTA 3217971 24 100.0 41 ........................ AAGATCACTGTTTTTGCAATTCCAACCATTTTTAAAGAGTA 3217906 23 75.0 41 A........C.C-.T....G.... AAGATTTCTTTTACATATTTAATGTGGAAACAAGAACGGTG 3217842 24 87.5 40 A.............T......T.. GAGGTTTCAGTACCAGAAGTACCGATTAATGGTTTTGATT 3217778 23 83.3 0 ..............T..-.G...T | ========== ====== ====== ====== ======================== =========================================== ================== 10 24 92.9 41 TTAATAGAAACATAGTGGAATCTA # Left flank : ATGGAACAATTATATAACTATATTGCTTATAATCTTCTTTCACCGGAAAATGCCATAGAACAATATAATCGAATTGCAGATAAGATACTAACACTGGATATTATGCCAGAACGTAACCGAATTATGGATTCAGAGCCTGAACATAGCAAAGAAATAAGGAGCATGTTAGTGGATAATTATTCTGTTTTTTATGTAATTGAGGGAGACAGAGTAATTGTAACAGATATTTTATATAGTGCGTCAGATATTAATAGGCGATTGAAAGGATAAAGCAGTTATAACTTCCAGAAGGTAGTGGGAATCATGATTTGTAAGAATACTGTCGACCGCAGATACTGTGAAATTTTCAGTGACTCGACAATGTGAGTGGTGAAGCCATTTTATACTACATTTATAGCAATAGATAAAGCTTATAACCAAATGAAAATAATGAAATAGATTGGGTCGACAATTAAGGATTGGGAATTACTTGTATTACTTTAGTGTGGAGATACGGGGTA # Right flank : AGATTGTCGACGTTATGCCAGAATTCATTGCAGATTAAGGCCTTAATAAAACTGTATGGTTACTCTGTCAAGAGTTTTGTATAAACATAAAAATTATATCAATTCTAATTAATTAAAGAAAAAACACAGCATTTGACAATCAATCTCATCAAAAGCTGTGTTTTTTATTATGTTATCTACTCTTTCCCATCCCAACAATAAGTACAGAGTTTTTTAGGATCCAATCCCACAGACTCAATCATATCATCCAGCCTGTGATATCTAAGCGATGTGAAATTCAGCTGCTTACAGATTTCATCGATCATACCCTGATATTCCGGAGAGTCCGGATTTGAAAACTTCTCCAGATGTACATTCTTGTAATCTCCGCTGATCTGTTCAATGATCCGGCGTGTGATCAGATCCATTTCAGAAGTAGAGCGTGAGAAATTCAAATATTTACACCCATATAAAATCGGCGGACAAGCCGGGCGGACGTGTACTTCTTTTGCACCGCTCTG # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAATAGAAACATAGTGGAATCTA # Alternate repeat : TTAATAGAAACATAGTGGAATTTA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 7 3221417-3219810 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036345.1 Anaerostipes caccae L1-92 strain DSM 14662 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3221416 30 100.0 35 .............................. AGATCCGCCTCCAAAAATGCAGAAGAGATCTCTGC 3221351 30 100.0 35 .............................. TCTCTTCTGATACCTTATCCGGCGGGGCCGTCACA 3221286 30 100.0 35 .............................. TAGTTAGAAGCGATAGCTTAACCAGCGGAAAAACA 3221221 30 100.0 36 .............................. GCTGATGCCGCTTTAAATTGGGCATTGGCCAGCTTG 3221155 30 100.0 37 .............................. GTGCTCGTTCGTAGCGCTCAATCGACACTTGTTTCGC 3221088 30 100.0 35 .............................. GTCTTCTGCCAGCATGTCGGCCTGTGATGCAAGCC 3221023 30 100.0 35 .............................. GCGTATGTTTTTCGTTTAATTACTTGCCCATCTTT 3220958 30 100.0 37 .............................. AAGGAATGGGGAATTGAATAAGGCAATTAGTAGACAG 3220891 30 100.0 35 .............................. TACAAAGGAGAAGACGTTCTCTGGCCTTCTCCTTA 3220826 30 100.0 36 .............................. TTTTTTGCAATATTGACAGACTTTCTGATCTTGCTC 3220760 30 100.0 36 .............................. AGTTTAAGTCCCTGTGCAAAGTAGCTGCCAGATTTT 3220694 30 100.0 36 .............................. TAGTTCATTGAATAATACCTCTTCTTGTGCCTCTTT 3220628 30 100.0 36 .............................. AAAGCTACAACTGGGAAGACGTTGGCCAAAGCAATG 3220562 30 100.0 36 .............................. GCGAGAGATTATGAATGCAGTGAATGATGCCGAAGT 3220496 30 100.0 36 .............................. TCCGGTGGGGCCATGTCCCTGAACATCATATTTCCA 3220430 30 100.0 35 .............................. GATCCTGCAAATCATCAACAACCGTTTTAAGAACC 3220365 30 100.0 35 .............................. GCATTTAAGGTCACCTCCTCTTCTATTTCAACATC 3220300 30 100.0 36 .............................. TAGATTTCTGTTTGCAGATTTTTAAAATTCAGTAGT 3220234 30 100.0 36 .............................. GATGCCACAACGAAGAGCATGAGCGATTCGGAAGTA 3220168 30 100.0 36 .............................. TTGTAATATGCTTGCTCTTCATTTAGCTTTTTCGAC 3220102 30 100.0 35 .............................. AAAGATGTTTCTGCATCTCCCGGTAGATAGAAATA 3220037 30 100.0 34 .............................. GTAGCAACAAGCGCAATAGTAACAAACCGCACGA 3219973 30 96.7 37 ..T........................... AAATCAAAGAAGCAAGAAAAAGGCTTGGGATTGATTC 3219906 30 100.0 37 .............................. GATTTTAAAGGATGCTTGGAAGGCGGAAAATGTATTA 3219839 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 25 30 99.9 36 ATCTTAATAGAAACATAGTGGAATTTAGAG # Left flank : GGGGAAAAAGAGTATGAAGGGTTTAAGATATGGTGGTAGTTTATGTATGTAGTTTTGGTTTATGATATTAGTCAAAGTGAAAATGGACAAAAACGCTGGTCAAGGGTTTTTAAGATATGTAAGAAATATTTGTCACATATACAAAATTCTGTTTTTGAGGGCGAGATATCCAAGGTCCAGCTGGTACAATTACAGCAGGAATTGAAGCCTTATGTGGACAAAGATTTAGATTCCGTCATTATTTTCAAAAGTCGTCATGAGAGATGGCTGGATAAGGAATTTTGGGGGAAAGAGGAGGATAAGACTAGTTTTCTTATATAAGAACTGTCGACCCTTGGTAGTGCAAAATTATAGGGAGATCGACAGTAGCGAGTAACTTAATAAAACAGGGACTTCATGCTTATATAATTTGTATCTTTGTGTTGAAAGTTAATGATTATTATGGGGTCGACAATTTGTAGGGGTTTAAAGGTGAGAAATAGGGGCTTCTAATGTAACGG # Right flank : CAAGCAACTTGAATATTAAATAGACGTTGCACAGATTTTTATGTTATTATATTATTATATCCATGCACATATTCAGCAAGGAAGGTGATGAACATGACAAACGAGGAGCAAATACTCTCTATACTTACAATTCTATCTAAGGATGTAAATGCATTATCTAAAGATGTATGTGAGATAAAACGAGACATGAAAGATGTTAAACAGCGTGTAACTAATCTTGAAGTTACTCAGGAAACTGAGATTATCCCACGTTTGAAAGATATTGAATCTTGCTACCTTGATACATATAAACGTTATCAAGACGGAAGTGAAGATATAGATTCTCTTAAAACGGACGTAACAATGATTAAGCGTTTTTTAGCACAAGTGAGATAAATAGGTATAATATAACATATATAACTCGTGTAAAGTCTACTAAGGCTTATACATGGGTTATTTTTATCTTAATAGAGACATAGAGGAATTTAGAGATTGATTGGTTTGCAATGGTAGTACAATTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTTAATAGAAACATAGTGGAATTTAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 8 3231002-3230248 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036345.1 Anaerostipes caccae L1-92 strain DSM 14662 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3231001 30 100.0 37 .............................. GACATTATCATCACAAATAAAATTCCCTGGGACTTTG 3230934 30 100.0 34 .............................. ATTCTATATTTCATTTTTTATTCCTCCCTTCTGC 3230870 30 100.0 37 .............................. GTTAGGCATCCTGTTTTAGCCCGCTCCGGCGGGCAGG 3230803 30 100.0 36 .............................. TTTTTATCGAATGCAAAGCTATAAAAGGGGATAAAA 3230737 30 100.0 36 .............................. GGTGGTTTCGTAATTCGTAGATAATTTCGTAATCGG 3230671 30 100.0 36 .............................. GATTCCAATACGCCGTTTTTAAAGAGCAACACATAT 3230605 30 100.0 35 .............................. GTACCAGCCCCTGAGGTTGCACCAGTATCCATCGC 3230540 30 100.0 36 .............................. TATGACTATGAGGAGGCGTTCAATCAACAGATCGAG 3230474 30 100.0 37 .............................. TCCGTTCTTTTCTTCTACAATGGTGTAGGCTTTTTTG 3230407 30 100.0 36 .............................. GAATATGCCGGGTACAATATCTTTAACGGAGAGTTA 3230341 30 90.0 35 ...........A............C..A.. TAGTTATATCCTTGGATCGCCACTTTGATATGGTC 3230276 29 86.7 0 ...........G...T.........-...A | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 98.1 36 GTAATAATAGATCCACATTGGAATTTAGAG # Left flank : TTGAGGAATCAGGGGGTTGTATATGCCTCTTTTAAATATGGAGAATTTGAGGGAGAGCGGAATGGAAGATACTTTACGGATTTGAATGAGGAACGACTGCACAGATTGGCAGATGAAGCTGGAGTTTTTATTGTTGAGGAAACATGGATCACGTCTGATGTAAGACCGGGGAGAGATGAAGAAAAATGGCTGAATATGATTTTGAAGAAGAAAGAATTATTTTGAGAGTTGATTCAGAAGGTTCTATCGAGTGTCAGATCATAGATGTTATAAGAAAGATAATCAATTAGGAAACGGTTGATCTGTAAGGATGAGGGACATTCTGTCAACCTGTTATAATGTAAAAATACCAGGGGGTCGACAACGGGCGGAATAGAGGCGTGAAATGTAAAAATTATAAGCAGGGTTGAAGGTTAAAGTTATGAAAAATGCGGTAATCTTTGCAGGCCGACAAATGGGGGTTGAAAAATGCTTATTTTTGCTATATTGTGAATGTATGG # Right flank : GACTAAACCGTTCTAACTCTGAAATGTGTTCGGTACAAGTAATAATAGAAATATAAAAGTTTGAATGAACTTAGATAGCAAACAGGAAGAAGTATGCTGTTAATATTAAAAATACGGAAACAATGTAAGTATTGTCACCGTACAAAATATTGCTTTTCAGTTCATTATAATTTTTTAAAATATCCACTATGGCCTATTAGTACTATTATAGAATTATTATATACTCTAAATCCCATTATGTATAAACTATATTATTAACCTATTTGATTATAATATAAAAACTTAACTTATTCAAATTTTTTCATTTTAAAATAAATAGCATTATTATATAAGGTTTAATATTGACAAATATAATAAGTGGTAGTATTATACAGATAAAGGAAGCAAAAGGAGGAAAATAAATATGCGTCTAGAGTTACAATTGGATCTTGAAAAGCCTGAACTAAGCAAAGATTATAGAAGAATTGTATTGTCGTATTTAAAGTTTGCGCTTAGCGAGT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAATAGATCCACATTGGAATTTAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //