Array 1 3669-2724 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHS01000481.1 Streptomyces calidiresistens strain DSM 42108 NODE_481, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3668 29 100.0 32 ............................. CGGCGGCTTTTGCGTAACCGGCGATTTCAGCG 3607 29 100.0 32 ............................. CACTCGGCCACCTTCTCGCGGTCCCCGGTGTG 3546 29 96.6 32 ............................T TGCCGGCGGGTGTCGGACTCGTAGATCAGCAT 3485 29 100.0 32 ............................. CCGGCGCGGACGCCGTGGATGTCGCGGGGCGC 3424 29 100.0 32 ............................. TCGAATTTCTACGCGTTCAGGATCGTGTTCCT 3363 29 100.0 32 ............................. TGGCAGAGAACCGGAGACGGGGCGAAAGGCCG 3302 29 100.0 32 ............................. GTGTGCCGGGGCCACAGCACCCACCCGGGCGG 3241 29 100.0 32 ............................. TGGACCGAAGGGCTCGCGGGCCGGTTCATGCC 3180 29 100.0 32 ............................. GCGGATGATACGGGAGTACCCGTCGCGTCGCC 3119 29 100.0 32 ............................. GGGGCGGCCCCTCTGCATGCGGGGTGGGCACG 3058 29 100.0 32 ............................. ACCAGCAGCACGAACGCGACCACCTCGCTCAC 2997 29 100.0 32 ............................. AACGACCTCGACGTCCTGATCGGCATCGACTA 2936 29 100.0 32 ............................. AGATGGTGCGCCTGATACGCCCAGCGCGAGAT 2875 29 100.0 33 ............................. TCCGCCTGTCCGGCCTGCACCTCGTTCGCCCCC 2813 29 96.6 32 .............G............... TCCGCGACCACGGCCGTCCTCGCGGGCGGTCA 2752 29 93.1 0 ..............T...........T.. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.1 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : TCGGGAACAGACAAGGGTGTGCAAGCACCGTGCTTGCACACCCCCCTCCGGCCCCCCACCCCGCACGGGGCCGGGCGGTCCTCGTTCGCCTTCCCCGGGGCTGTTTACGACCTTTGGCAGGTTTTGTGGACGGTGCGAACTCGCACCGTGCAAGCACGGCGCTTGCACCGGGGCGTCGGAGGCGGGTGCCGGTGGGAGGAACGGTCATCTCGGATCGACTCCGCCGGACCCGGAAGACTCCTCCGCCCTCTCGACAGGGAGGGACCTGGATGGCCACGGCTTCGGGAACCGGGATGCGGCGTGCCGGCGGCACACCGGTGGGCGCCCCGCCCACGGCGCCCCGTCACCCGGCTGTGCGAGGAGCCGGGTCGTTGTCCGCCGGACCGGCTACGGTGGTTTCCATGTGGTTGATCCGGAGTTCCGGGCGAGGCGAAATGTCCGATTCCCTGCTTCTTGCAAAATCGGGCACACCCCGCCGGTAAACTCCCAGGTCAGCTACT # Right flank : GGCCGGGAGATCGACGGTGAGGCGCCGGCCGCGGGGTTCCGGAGGCGGGGCACAGTGAGGGGGAGTGCCGGGCCGGGTGCCCGGGGGTGGTCAGCCGGGGGTCCGGCCGATTCCGGCCAGGGCCGTGACGAGGAGGACGAAGACGGCGAGGGCGGGCAGGGGCATGTGCCCGCCCGATCGGTCGACGGCGTCGATGAAGTACCCGGACAGCCCAGCCCACATCAGCCCGCCGACCAGCACGAACACCGTGGTGTCGCGCTCTCCGGTCAGCCGCATGCCTGCCCACAGCAGAATGGGCATGAGCAGCCGGGAGGCGGCGGTGGTGAGCAGGAACTCCGGGGCTCCGGAGAACAGGACGTCCCCTGCGCCGGTCGAGGCGTCGCGGGCACGCGCGTAGCCGGCGGACATCAGGGCGTGGCAGGCCGCCGTGGCGGCGGTGACGGTGAGGGCCCCCTTGGCGTGACGCATGTACCGCATGGCGGCCATCCTCGCGCCCTTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27658-27446 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHS01000001.1 Streptomyces calidiresistens strain DSM 42108 NODE_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27657 29 100.0 32 ............................. GTGGGAGGCGTGGTCCGCCGAGTTGACCCACG 27596 29 100.0 32 ............................. GGGCTCGCCGGACTCCTGCTCCCCGCTCTCCA 27535 29 100.0 32 ............................. GCCCATCAGCGGGGGCTGGGAGAGGGCGAACA 27474 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GGTGCTCTCCGCGCGCGCGGGGAACACCG # Left flank : TCATTTGACGCTCGTTCTGATGGGGCGTCAGCTGCCTGATCGTGCAGGTCGCGGCGGGTGGAGGGCGTGCTCCCGCGAGCCGACTTTGCAGAAACTTGAAGTAAACCCGCCCGACTTCCCGCCCGTGGTTCGACGGGTCGAACCGCCGGAGGAGCGGGCGCTCAACGGGTCGGCCCGCAGGGCTCCGGTGTCCGAGGAAAGGCATTGACGCAACCCCCCGCCGTGTTCCCCGGTCCCCGGGGAACACGGCGGGCACAGTGGCGGCCCGGGGGCCGGGTGGTGGGCCCCTCCTCTCGACCCGGGGTGAGAGGAGGGAGGCTGTTGAGGAAGCGTGAGCAAGAAGCAGGGCGTCTCGCTCACGCGGCACTGTCCGCGTCTCGAAGCGCCCCTACACTGCTTTCGTGATCCAAGAACCCGGCCACGACTTCCCCCGTGGGGGAGAGGGCTCCTGCAATAGCAAAGAAATTGCAAAGCGCCTCTAACGTCGCAGGTGGGGAAGG # Right flank : ACACCGCCTCACATCCCGCCCGCCGCACCGCGGACCACCCCCGCTCGCGCGGGGAACACTAGTTGCGGGAATGCCGTTCGTAGTGCGGGGACAGCCGGCGGTAGCCGACCAGCCGGGCGATGGTCCTCTCGATCTTCCAGCGTTGTCGTCCGAGTCGTTGGGAACTCTCCACGCCCTTGCGTGCGATACGGACGGCCAGGCGTTTGCCGCGCATCCATCGTCGCAGGTCGGGGATGTCGTAGGCCTTGTCCGCGTGGATCCGCCCGGGGTGGTAGTGGCGGCCGCGTTCGGGGTCGTGTCTCGATGGGAGACCGGCCAGGAGCGGCTTCAGGCCCTGGCTGTCGTGGGTGTTGCCACTTGAGACGGCGACCACGAGGGGCAGGCCGTTCGCATCGGACAGGACATGCAACCCGGGACCCGCCCTGCCCCGGTCCACGGGGCTCGGACCCGGGCGCTCGCCCCCCTTTTTTGGCCCGCACCCCGGGCGGTGTCGATCAGCA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGCTCTCCGCGCGCGCGGGGAACACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-11.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 2501-5156 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHS01000010.1 Streptomyces calidiresistens strain DSM 42108 NODE_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2501 29 100.0 32 ............................. TCCTCCAGCTCTGCCCGGGACGCCCACGCGGC 2562 29 100.0 32 ............................. TCCGCCGTGAGTCAGCTGATGTCCGAAGGTCT 2623 29 100.0 32 ............................. ATGTGCGGATCGTACACCGGGGATGTTCGATC 2684 29 100.0 32 ............................. TCGCGACGGAGCGCACGGCCGACCTCGTGGTG 2745 29 100.0 32 ............................. AGGGCGTGCATCATCCGCATCTGCTCGGGGGT 2806 29 100.0 32 ............................. GACTGGCTGAGGGTGAGCGGGGCCGCGCCGAG 2867 29 100.0 32 ............................. GGGGCGAATGCGCGGGCGAGGTCGGCCCAGGT 2928 29 100.0 32 ............................. GGGGTCCGCCCGTCGCGGGGACCTTGAGGACT 2989 29 100.0 32 ............................. CGAGCAGGACCGGAAGGAACGCGATCAGGCCG 3050 29 100.0 32 ............................. TTGTTCGCCTCGGTCCACGTGCCCGTCTCGTC 3111 29 100.0 33 ............................. TCGATCTGACGGCCTGGTGCCTGCGGTTCGACG 3173 29 100.0 32 ............................. AACCTCGGGCAGCCGATCGACAACTGGCTGAA 3234 29 100.0 32 ............................. TCAACCGGTACGGCAAGGACTCCGATCCGCTG 3295 29 100.0 32 ............................. ACCCTGTGAAAAGCGCCTGATCTGTGGTGGGA 3356 29 100.0 32 ............................. TCCGGGCGCAGCCACATCCGCGCGTAGCCGTC 3417 29 100.0 33 ............................. TCCTCCGCAGTGGTCTCCCCGGTCGTCAGATCG 3479 29 100.0 32 ............................. TCTGTTGTTTCTTTCCCAAGTGACCCCGAAAT 3540 29 96.6 32 ............................A AGGCGTCATGCTGCCGCCCCGGGCCGACTTGA 3601 29 96.6 32 .................T........... CTGCACGAGGTACTGCGCCGGTGCACCCGCGA 3662 29 100.0 32 ............................. TCAACACGAGTGCACACCGATTTCCGGAAATC 3723 29 100.0 32 ............................. TGGATCGCCGGGGACGTGAGCCCCACGGAGCT 3784 29 100.0 32 ............................. CCTCCATCCGAATCGCGGCCATCTCTTCGGCC 3845 29 100.0 32 ............................. TGAACAGGTCGGGCCCCAGAGGATCGCGACGT 3906 29 100.0 33 ............................. CGGTACATGCCGGCCGACACCATCGCCGCGGTC 3968 29 96.6 32 ............................T TCCTCCGTGTGATCGAGAAAGATTTGATCTAG 4029 29 100.0 32 ............................. CATCCAGACCATCGAACGGAACGTGCTTGAGC 4090 29 100.0 32 ............................. GAGGACATCCGCGTGTTCTCCAACCACCTGCG 4151 29 100.0 32 ............................. GAGTGCGCCGTACGCACCGCCGACGCCGCCGC 4212 29 100.0 32 ............................. GCCATAAGCCCACCCCACCGACGCGACCGTGG 4273 29 100.0 32 ............................. CCGACGGCGTTCGCGGGGCACGCGGCGGATGG 4334 29 100.0 32 ............................. GATCGGCTGACCACCATGGACAACCTCCTCAC 4395 29 100.0 32 ............................. TCCTGCACCGTCACGTCGCTGTCGCTGTAGAG 4456 29 96.6 33 ..........T.................. TGGCTGGCCTCGTTGACGGAGGCCGCCGACAGC 4518 29 96.6 32 .........A................... TGGAGTGTGACAACGGCCCCCACCCTCTCGGG 4579 29 100.0 32 ............................. GACATCGTGCCCGGCGGGGGATTCGGCATCGG 4640 29 96.6 32 ............................G CCAGCCGCCCCGTGGTCGCCCCGGACGGGGCG 4701 29 100.0 32 ............................. GGGTGCTGCCCTTGGGTCCCGGCCGGTCACGG 4762 29 100.0 32 ............................. TCCAGCTCCGAGACGGTGATGTCGGCGGTGCG 4823 29 100.0 32 ............................. CGCACCACCGGGCACACCCCGAGGCCGTGCTC 4884 29 100.0 32 ............................. ATCCACGTCACGCGCGGCGTGACGCAGCTCGC 4945 29 100.0 32 ............................. CCGTCGTGCTCCTCCGGCCCGGTGTGGATTTG 5006 29 100.0 32 ............................. AGGCCCAGCCGCCCGTCGTGCTCGTCCATCTC 5067 29 93.1 32 .C..........A................ GTCCAGTACGGCCTGGTCGAGATGCGCCGCGA 5128 29 89.7 0 ........................T.TT. | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.1 32 GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Left flank : CCACGGTGAGGAACCCATCTGGTGACCGTCATCATCCTCGCCAACTGCCCCAGCGGCCTGCGCGGGTTCCTCACCCGTTGGCTGCTGGAGATCTCCCCCGGGGTCTTCCTGGGCGCCCCCTCGGCCCGCGTACGGGACATCCTGTGGGCCGAGGTCCGCCAGTACTCGGGAAAGGGACGGGCCCTGCTCGCCTACCAGACCAACAACGAACAGGGCTTCACCTTCGAGAGCCACGACCACGCCTGGCACCCCATCGACCACGAGGGTCTGACCTTGATCCACCGCCCGAGTGCCGGACGGCCCACCGGAGAGACACGCGCCCCGAACCCCCCGCGCCAGGGCTGGAGCAAAGCGGCCAAACGACGGCGCTTCGGGAACCGGTAGGGTCGGGAAACCGGCTCCACCTTTCGAGCGAAAGACCAGGATTGCACCTTATGTCGGAATCTCTGCTAGTGAGTAAAAACAGGCTCCCGGCGGGATAAAGACGCAGGTCGGCTCCT # Right flank : CGGATAGGCATGCGAGATCGTTGCTCGCTCCGTGTTCCTGCGCCGGACACGGGGCCGAGCGGTGGCAGGCGTGCCCCATCCGTGCCCTTCGGAGCGGGCAACACCGGTCAACAGCGGTGTTCACGGAGCCTCCGGGACGGGCGGACAGGAAGGCGTTTCCGCAGATCAGGGCGGCTTTCCGTGCGGAAGCGTCGGTGATTCCCAAGCTCAGAGCGCGAGTTCGATTCTCGTCGCCCGCTCCACTGCAAAGCCCCGGGTCAGGGACCTAACCCCGACCCGGGGCTTCGTTGTGTCCGAGCCTGCCAGGACTTTCGCGGCAGAATCGTCTGGCAGCACTCTTCGTCCTCGGCGAACGACAGCCGTGCAGGAGCAAGGGACCGCTGGCAATGAACCTGAGCGTCCAGTAGAAGCAGGCCGCCCGTCGGCAGATGGTCGTCACCGGACATGTGGCCGCCGCCGGCGCCGGGGATCCATCAAAAGTAGAGAATTTGCTACACTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-1297 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHS01000076.1 Streptomyces calidiresistens strain DSM 42108 NODE_76, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. GGGGCGGGGGATGAGCGGGCCGGAAGGGGTAC 62 29 100.0 32 ............................. GTGCTGTAGATGACGCCCTCGGCCGCGGCCCA 123 29 100.0 20 ............................. CCGACCGACACGACCGACAC Deletion [172] 172 29 100.0 32 ............................. AGCGACGCGATCACGGCCGATGGCGTGACCGT 233 29 100.0 32 ............................. CGCGAACGCCGCTCCAAGAGCGCCAAGGCGGC 294 29 100.0 32 ............................. ACCCATCTCGCTCAACAGCTGCTCGCGGTCAC 355 29 100.0 32 ............................. GCCCGTGGCGATCGGGATGCGCCAGTCCATCG 416 29 100.0 32 ............................. GGTTCCCGGGGCCGGCCGGCACGGGATCGGCA 477 29 100.0 32 ............................. CTGGTTCGAGACGACTTGCGTCCCCAGGATTC 538 29 100.0 31 ............................. GCGGTGAGGCGGTCCGGGAGGTCGGGGGCAG 598 29 100.0 32 ............................. GCCGCGGTGTGGTTCCGGGGGCTGCCGCAGAT 659 29 100.0 32 ............................. CAGCGGATCGTCATCGCCACCGCCACGATCGC 720 29 100.0 32 ............................. ATGCCGCGCACGGTGGAGGAGCTGGAGCGGCT 781 29 100.0 32 ............................. GGCTTCGCCCGGCATCCGCGGTGTGACTGCGT 842 29 100.0 32 ............................. CCCGCGGGGATGGCTGCGGAGTCGGGGCAGGG 903 29 100.0 32 ............................. GGCTGGGAGTACAAGGCCCTGCAGGTCAAACC 964 29 100.0 32 ............................. CGTTGGGGCGGTGGCCGATCATTCCCCGCACC 1025 29 100.0 32 ............................. CACCTGCCTATCCCGGCGGACCTGCGGGCGGA 1086 29 96.6 32 ............................T CGCTTGTAGAACGCCAGCATGTGGCGCTTCAC 1147 29 100.0 32 ............................. TCGGGGCCTCCTTCGGCGGCCGGGTCTTCCCC 1208 29 100.0 32 ............................. TCGTGCTCCGCGGCTGTGAGGGCCCTCTGAGC 1269 29 96.6 0 ......................A...... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.7 31 GTGTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : | # Right flank : GGCCCTCCCTGACCGACCTCCGACCTCCGACCGAAATGATCCGTGCCGCGGAGCGCAGCGAAGTTCCCGCCCTCCCCCTCCGACAGCGCCGAGTTGGTCCGCGGAGCCGTCGCTGGCCGCACCCTGGGGCGGTCACCGGTGAGGCCACACGACCTGCCGAAGTGGCGCGCCGAGACCGCGCGTCACTTCGCGGACTGCCGTGCGATCGTCCGCGAGGGCGCCGGGTTGGTCGTGGCTATTCCTCCGAGGGGTGAGGAAAAGGGCAGGGCCGCTCTGCAGGGTGGGGCGACCGCGCGACTCCCGCCACAGGACCCGTCCCGGTCCGTCTGACACCGGTTCCGGAAAAGTCAGTCGATGCCCCGGTGGCGGCGCAGCTCGGCCGCGCCCTTCTCACTTACGTGGTTGTGATTGCCCTTGCGATTCCCCAGGCGTTGGGAATCAGCTCAGAAAGGCGCTTCCACATCTTCCATGAACTCCTCCGGACGAAAGGCGACGAGGGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 344-3308 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHS01000077.1 Streptomyces calidiresistens strain DSM 42108 NODE_77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 344 29 100.0 32 ............................. GCCTACGGGTCGGTGACCGGCGACCCGGTGCA 405 29 100.0 32 ............................. ATAGGTCGATCGTGGGGGCGTCACGCCGTAGG 466 29 100.0 33 ............................. CTCGACATCGAGCGCGCGGAGCGTTCCGCGACC 528 29 100.0 32 ............................. CATGGATCGACTGAGATACCGCGTCTACGGGA 589 29 100.0 32 ............................. ACGTCGTAGAGTCCTACCGCGCCGAGCGTGGG 650 29 100.0 32 ............................. AACGTTCTGACCGTGCCTTTCGCGCTCGGTCT 711 29 100.0 32 ............................. TCCTCCGGCTCCTGGTCCTCCGAGGGCGTCAT 772 29 100.0 32 ............................. GAACTCGCCGGGATCCTCCGGAACGTGTGGAA 833 29 100.0 32 ............................. GTTACGGAGAACCGTGGCCGCCTTCGTGGCCT 894 29 96.6 32 ............................A GTGGCGGGCCTCCCCCGCCGCCCGGGGCCGCA 955 29 100.0 32 ............................. CGCTGGGAGTGCGACCGCTGCTACGGCTGGCA 1016 29 100.0 32 ............................. CAGTTTGGGCAAAAAGTTTTGAGGAGTTTTCG 1077 29 100.0 32 ............................. GCGGCGAGTTCCACCGCCTGGCCGCCCCCGTC 1138 29 100.0 32 ............................. GCGCCGGCGCCCTCGCCGGCGCCTTCTGGGAC 1199 29 100.0 32 ............................. GCGGCGCCGGCGATCGAACTCATCACGAGGGT 1260 29 100.0 32 ............................. CCCGCCCCCGCGTGCGCCACTTCCCCGACACC 1321 29 100.0 32 ............................. GCACGGGCCTGCCCGTGCCCCGGGCCGCCCGC 1382 29 100.0 32 ............................. TCGGCGGAGCTGCTGGCCCTGGAGCGGGTCGA 1443 29 100.0 32 ............................. CGGCCCGCCATCAACACCGCCGCCGCCGCCCT 1504 29 100.0 32 ............................. GACCGGCACCGTTACTCACCCGTTACTGATCA 1565 29 100.0 32 ............................. TCCATGCCGATCGCGCGCAGCAGCCGGGCGTA 1626 29 100.0 32 ............................. CGCAGAGCGCGCCTGGCGGCTGCGCCGCCGAC 1687 29 100.0 32 ............................. GCGAGCGCGAGCAGCTCGCCTGGGAACTGGAG 1748 29 100.0 32 ............................. CGAGCGTGCCCCCGCCGGGAGAGGCGGGGGCA 1809 29 100.0 32 ............................. TCGTACCGGGTGCTCACCCACTTGTGGCCGGT 1870 29 100.0 32 ............................. CCGACCGGCCTGCGGAACGAGTCGGTGCAGCT 1931 29 100.0 32 ............................. CATCGTGCCGCTCCTCCTGGGCGCCGCCACCG 1992 29 100.0 32 ............................. CATCGTGCCGCTCCTCCTGGGCGCCGCCACCG 2053 29 100.0 32 ............................. AGGTGCGGGGGGACGGCGCCCGGGCCCATGCC 2114 29 100.0 32 ............................. GGCAGCGGGTCGCTGAACACCGTGTGGAACCC 2175 29 100.0 32 ............................. CGTCGCGGTACGGAAGGCGTTCCAGGCGCCCC 2236 29 100.0 32 ............................. GACTGGGAGATCAACGGCGACCCGCCGCCGCC 2297 29 100.0 32 ............................. CCGGACGAGCGGACCGGCTGGATCCTCCTGCA 2358 29 100.0 32 ............................. GGGGGTTCGGTCATTGCTCATCTGTGAGCGGA 2419 29 100.0 32 ............................. GCGTGGCTTCACCTCGTGGGCACGCCGTTGCG 2480 29 100.0 33 ............................. CACTTAGCCGGTTCTCCTTTCGGTGCGGACGGA 2542 29 100.0 32 ............................. GGCTGGCATCCCCACATCCACGCGATCCTGCT 2603 29 100.0 37 ............................. CCTCACCCGACCGACCACCCGAAGGAACGAGAGATGA 2669 29 100.0 33 ............................. CACGTGGCTGCGGTGAGGAGGGCGGCGAGGACG 2731 29 100.0 32 ............................. GCAACCTCACGAGGGCGGGCGGGCGGCTGCTG 2792 29 100.0 32 ............................. CGCCCATGAGCGGGTCGGGGTATAGGCGGGTG 2853 29 100.0 32 ............................. GCTACATCGAGCGCACCCGAGGTGAGGTCGAG 2914 29 100.0 32 ............................. GCGGCGACGGGCTGAGTGATCAGCCGGCGGTA 2975 29 100.0 32 ............................. TCGCCGGAGTAGATGCGGTCCCGGTAGTGCGC 3036 29 100.0 32 ............................. GCAGCGTGTACCCCGCCCACATCCCCGACAGG 3097 29 100.0 32 ............................. TGCCGAATGCCGGTCAGGCGGGTGCCGGGGGC 3158 29 100.0 32 ............................. AGACGCAGCTGCTCACCAGCGTGCCGGCACGC 3219 29 100.0 32 ............................. AGCGGCTGGTCACGGAGCGCGAAGGCAAACGC 3280 29 96.6 0 ...T......................... | ========== ====== ====== ====== ============================= ===================================== ================== 49 29 99.9 32 GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Left flank : ACCCCACCCCCCGCTTCCCGGCCGAGGGCCCACACAGCACCCCGAATGCGCTCCGCTCACCCACAGGCTCAACAACGAACAGGGCTTCACCTCCGACATTCACAACCACCCCCGGCGCCCCATCACCCGAGCACCGGGAGATCCACCGAGAAGCCACACCTCCCGAACGCCCCGGACCAGAGGCAGGAACAAGGCGACTCAACAACGGTGCGTCGGAGAACCGATAGAGTCGAAGAACCCGCTCAACCCTTCGACCGAAATACCAGGATTGCACCCTATGTCGGAATCTCTGCTAGTGAGTAAAAACAGGCTCCTCGCGGGATAAAGACGCAGGTCGGCTCCTG # Right flank : CATCCGTCAGGGGCGAATGAAGACCTTGGGTTTCGGCGGCAGCGTCCGCCCCGAGGTTCGGCACATCATTCGCCCGGAGCCGGCGGGAGGTCACCGTTCACCGGAGAGCGGCTCTGATATCCCCGTGGGCCAACCCTTCTCGGTGACTCGCCTTGCCGAACGTGTTCGCATGGATTAGACACGTAGTGTTCGCCTACGCTAGAACCACGACGTGAAGCGAAGAGAGCTCATTCGGACGCTGAACATGCTGGCAGCCGAGAAAGGAGTGCGCTTCGCCCTCGAGCGACAGGGGAAACACGAGATCTGGTCCTTCGGCCCTCTCACCATCCCCGTCCCGAGGCACAACGAGATCGCCGAAGGCACAGCCAAGGCGATCATCCAGCGGGCTCAGGACGTCGAGTCCTGAGCCCGCTGGGCCCATCGCCCGAAGGAGAGGACGAGCGATGACCAGGACCGCGCAGAAGACGAGAACAGCAGTACGGGCCACCGCGAAGACGGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 131-521 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHS01000777.1 Streptomyces calidiresistens strain DSM 42108 NODE_777, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================= ================== 131 29 96.6 32 ..............T.............. GCCTGCACGATGCAGCTCATCCAGGGCGAGCC 192 29 79.3 89 .............C......AGG.TC... CGGCGTTGGCCTCACCAAGTGCCCTCGCTGCCCGTCCCGGACCAACTAGAATCGGTGCTCTGGGCCGACAACACCGCAGCTCGGAAAGC 310 29 100.0 32 ............................. GGGTGATGGCCGAGGGCGCCATCTACGACATG 371 29 93.1 32 .........A..................G TACCACGGTGACCGGTAGCGGGACTTCGCCGA 432 29 100.0 32 ............................. GAGGGGACCTCGTGCTCCACCTGCACCAGCAG 493 29 89.7 0 .C...........G.............T. | ========== ====== ====== ====== ============================= ========================================================================================= ================== 6 29 93.1 44 CTGCTCCCCGCACACGCGGGGATGGTCCT # Left flank : GCCCTGACCCTCATCAACGGCGACCGCCCCAACACCGCACCTGCCCCCACAACGGGCTCCCGGCAACCCACTCTTTTGTAACCCTGACCTCGAGATACCATTCCGACGAACACCACTCACGACGACTACCC # Right flank : TTCCAGGGTGTTGGTGGACTTCTCGATCGTGGCCTGTTCTCCGCTTGTGCGGACCCCTCGGCCTGTCACCAACCTTTTTCCTCGGTCCGGCGGTGCTCTCGGAGTCGGTGAGGGCGCGTCGGTGGGCCCGGCGCGAGGGCAGCTCCTCCTCCTGGCCGTCCTCGAGGTCGGGGCCGGGGACTGTGGCCGGTTCGGTCCCGGTGCCGCTCCCCGGTATCCGGATCGGCGGTCCGCAGCGTCTCGATCAGTCCGGTGGCGGCCTTCTGTCCCGACGCCTCCCGCAGTTCCCCGGCGCCCCGGGTGGCCTTTTGGCGCAGCGGCCCGGGCAGTTCACGCCAATGCGCGGCCAACCGGTTCAGCCGGTCGATATCCCCGGTTCCGGTTCCGGCGGGCGTCGAGTCGGGGATTTGTTGATACCCTCACTCACCGGGCCGGTAGCCCCGGCTTTTCGCGTGGCCGATCCGGGGAAACGCCTCTGCCCCGGAGCACGCCGGTTTCGG # Questionable array : NO Score: 4.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-1.02, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACACGCGGGGATGGTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2134-2494 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHS01000086.1 Streptomyces calidiresistens strain DSM 42108 NODE_86, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2134 30 100.0 37 .............................. CGGCGAAACCGTCCGTGCTGAGGGTCAGGTGGGGGCG 2201 30 100.0 35 .............................. GGGCGGCGGCATACATGTGCCACAGGAAGTCGTGC 2266 30 100.0 37 .............................. ATGTCCACCTGCGCCTGGAGTTGCGCCACGTCCACGT 2333 30 100.0 36 .............................. GGGGTGTCGGTCTCCTCCGGGAGTGTCGGGTCGAGG 2399 30 100.0 36 .............................. AGGAGCTGCCACGCCTGCCCACCGGCCTCGGCGGCG 2465 30 83.3 0 ................C.......G.GCC. | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 97.2 36 GTCCTCATCACCCCTGTGAGGGGTAGCAAC # Left flank : CGGCGCTGCGGCGGTCCGCGTCCCGCTCTCCACGGTCGGCCTGATGCAGTACATCGCACCGTCCACCATGTTCCTGCTCGGCCTGCTGGCCTTCGGCGAGGAGATGCCGCCGGAGCGGTGGATCGGCTTCCTGATGGTGTGGACCGCGCTGACCATCCTCACCTGGGACGTGCTGCGGCAGGCCCGCCGCTCGCGGGCCGCCCTGCGGGAAGCCGGGCGGGCAGCCGGGGCGCGGCTGGCCGAGAGCGCACCCACCGGCCCGCCGGAGGCGACGGCCGTGGCCGGCGGCATCCCGGCGGGGGCCGACGCGGGCGGTCCGGGAGGCGCCGGGACCGGCGCCGACGCCGGCTCGGCGGCGCAACGCGGTTGAGGCGCGGCGGGGGTGGGGCGGTCCGGATTTCAGCGACTCTCCGGGGTTTCGCGCACGACCGGAGGTCCGCTGAAAAATCGGCCTCTGCCTCGCCCTCTCGACCCCACCCCACCTGGACCTTCACAATGGG # Right flank : CCCGCCGCCGCGTGTCCCCCGGCGGTGTCGGTGGGGGGTGGGATGCTGGGTGGATGATGCTGTCGGACCTGGCACGGCTGCGCCGGACCCGTGACCTGATGGACCGCGACTACGCGGAGCCGCTCGACGTCCCGGCTCTGGCCCGGGTCGCCCACATGTCGCCCGGCCACTTCTCCCGCAGCTTCCGCGCCGCCTTCGGCGAGACGCCGTACAACTACCTCATGACCCGCCGGATCGAGCGGGCCAAGGCGCTGCTGCGGCGCGGGGACCTGTCGGTGACGGAGGTCTGCATGGCGGTGGGCTGTACCTCGCTGGGGTCGTTCAGCTCGCGGTTCACCGAGCTGGTCGGCGAGAGTCCGAGCGCCTATCGCGCCCGCGACCACTCCGAGGGCTCTGCGGTCCCACCCTGCGTCGCCAAGGTTTTCACCCGACCGGTCAGGAACGGAGAAGCCCGGCGGCCCCGTCCGGTCGTAGCGTGATCGGCATGGACATCAAACTCT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCACCCCTGTGAGGGGTAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 6283-3817 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHS01000169.1 Streptomyces calidiresistens strain DSM 42108 NODE_169, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6282 29 100.0 32 ............................. ACCTGAAGCGGGGGACCGGCGGCCACCGGACC 6221 29 100.0 32 ............................. GTGCCGGTGGCCGCCCGGCAGCGCGAGGTGCT 6160 29 100.0 32 ............................. GCGTACCTGGGGGCGACCACTCAGGCCGTGAT 6099 29 96.6 31 ............................T CGAGACGGCCTAATGTCCGCCTACGTCGATG 6039 29 100.0 32 ............................. CCCGAGTGGTACGCGGACGGGGAGTCCCCGTG 5978 29 100.0 32 ............................. GGACGGACGAAGCGGGCGGAGAGGAAGTCGGC 5917 29 100.0 32 ............................. TGAATGCCGGAGTCGGGGCCGCCATCCCTCAG 5856 29 100.0 32 ............................. GCCATCTCGGCGGCCTCCCAGGTGATGTACGG 5795 29 100.0 32 ............................. ACCGGAGCACTGCGCTGGCTGGCCGCCGGTGG 5734 29 100.0 32 ............................. GTCAACCGCAGCTCGCCCCCGCGATTCACCAC 5673 29 100.0 32 ............................. CCGGGCAACGAGGCGAGACCGAGGCCGGCGTG 5612 29 100.0 32 ............................. CGGACACCGACCGGGAAACGGCTTCCCGCGAC 5551 29 100.0 32 ............................. GCGATGTGCGTGGTCATGCCGTAGCCAGCCTG 5490 29 100.0 32 ............................. CCGGCTGCGAGGAGCCAGGCGAGGGCCGTGTC 5429 29 100.0 32 ............................. AGCGGCAGTTGCTCGGGCGGCTCCAGCCGGAG 5368 29 100.0 32 ............................. CGCAGCGCGAAGGAGACGCGCGAGCAGCTGCT 5307 29 96.6 32 ............................C GGGGACCGACCGGCGAGCGCTCCCGGCGGTCC 5246 29 100.0 32 ............................. TACTTCTTCATGGCGTTTCCTTTCTCGTTGAT 5185 29 100.0 32 ............................. CCGAGTCCGACCCGACCGTGCTCCCCGGGTGG 5124 29 100.0 32 ............................. TCCTCGCTGCGGGACCTGCTCGGAGTGCGATG 5063 29 100.0 32 ............................. GCCACCAGGGCGGCCAACGCGGCGACGACGGC 5002 29 100.0 32 ............................. CCGCCTGCCCGATCAACCACACGATCAGACCC 4941 29 100.0 32 ............................. GCGCCCGGGTATTACCTGATGGATGCCTGGAC 4880 29 100.0 32 ............................. GCGTGCTGGCGGGCGGCCTCGGCGATGAGGTC 4819 29 100.0 32 ............................. CCGCGAAGCGCTGGCGCGGCACCGCCATGGGC 4758 29 100.0 32 ............................. GCGCCCGCACCGACCTCAAGGAGACCCCGTGA 4697 29 100.0 32 ............................. CGTCCCGAAATCGTCATGACCTTCGGGCCCGA 4636 29 100.0 32 ............................. TCATCCGGCCCCGGGCCCGCGAGCACGCGGAG 4575 29 96.6 32 ............................T ATTGGCGCGTCTGTGCAGCAATATGGGTCCGG 4514 29 100.0 32 ............................. CCTGCGGACGCTGAAACCCGGCCTCGATGAGC 4453 29 100.0 32 ............................. GCACACCGGCCGTGACCGGACCCCAGGACGAC 4392 29 100.0 32 ............................. ATGAAGGCTCCGGAGTATGTGGAGCCGCAGGT 4331 29 100.0 32 ............................. AAGTGGCGCCAGAGCTGTTCGCCGATGTCGAG 4270 29 100.0 32 ............................. CGGGACTGGCGGGAGAAGGCACGCGCGGCGTC 4209 29 100.0 32 ............................. ATCCGTTGTGCTTCTCCCACACCACGTCCTGC 4148 29 100.0 32 ............................. CCGGCGGCGCCGTCCACGACCTGATCGAAGCG 4087 27 93.1 32 ..............--............. GCCGCGACCCGGCATTTCGGAAAAACACCGGA 4028 29 100.0 32 ............................. TGCCCGATCATGCCGGTGACCCACTTGCGGAA 3967 29 100.0 32 ............................. CTTCTCCTTGGCCATATCGGGGACACGACGCG 3906 29 96.6 32 .........A................... ACCTTGACCGCGAAGTAACTGCAGTCAGAGAA 3845 29 82.8 0 ...............A..AA....AG... | ========== ====== ====== ====== ============================= ================================ ================== 41 29 99.1 32 GTGTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : GAAACGGCTCGAACCACGCCACGCTACGGGCGCCGCGGTCGCAGAGGCAGGGGCCTTGCACGCGTCCCTCTTGTCGAAGCGCTCCCAGGCGCGGCATACAGAACAGACGTCTCGCCCCGCCCCTGCCGAGGCCGGCAACGGCCAACCTCGATGCCTATTAGGCTTACTCATCCCGCGGAAACCGCTCCCACCTGCGAAAACGCGGCATCAAGGCGGTCATCCCGGAGAAGAGGGACCAGGCCGCCAACCGGAAGAAGAAGGGCTCCAGCGGCGGTCGGCCGGTCAGCCACGACGCCGACCTCTACAAGGAGCGGAACACCGTCGAACGCCTGATCAACAGGCTCAAGGCATGGCGAGGCATCGCCACCCGATACGACAAGACCCCGGACAGCTACCTCGCCGGCCTCCACCTGCGCGCCTCGATGATCTGGGTCAAAGACCTCACCCGGACCACCCGATGATCACGACTCGATACGCGCCCTAACACCGCAGGTCGGGAA # Right flank : TCGCGATACTTCTACCTGCCGACCCCGATGCGGTGCTCTTGACGCGGGCAAAAGCGCTCCGTCCGTTACCGGGGAGAAGTAAGGCCGACCCCATGCAGAGCACCCACCCCACCGTGCTCCCCTACGTCGAGTGGAACCGAAGGGTCGTCCGTCAGCGGTGGGAGTCCTCTGGGACTTTTCTGGGACTTCTGGCTTCATCAACCGGCACGAACGTGAAACAACCGAAAGGCCATTCGCGCAGGTCAGGGACCAAATTCCCCTCATCGTGGCAGGTCACTGCGCCGGCTGGTCTCTTCAGGGACATCTGACGGGCGGAGGCCGCCGCGCCCCTTCCGACCTGCTGCGTCGCAGGTCGGAAGGGGCGCGGCGTCGCCCGCGAACTGCACGACGTGGTCACCCACCACGTCACGGCCATGGTGGTCCAGGCCGACGCGGCGCAGTTCCTGCTCACGTCCGCGCCGGAACGCGCCGGCGAGGGGCTGACGGCCGTCAGCGACACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 686-915 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHS01000020.1 Streptomyces calidiresistens strain DSM 42108 NODE_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 686 30 100.0 36 .............................. GTGACCGGCAGCAGGTTGTTGAGGTGGGCCAGCAGG 752 30 100.0 38 .............................. TGCCACAGCACAGGTGTGTGCACCGTCACGCCACCCAC 820 30 100.0 36 .............................. CAGCCGGGGCAGTCGTCGGCGTGCTCGGGGTCGGCG 886 30 96.7 0 ................C............. | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 99.2 37 GTCCTCATCACCCCTTTGAGGGGTAACAAC # Left flank : CACGTCACCCCGCTGCTGTCGGTGTGGGTGGACGACGCCCCGCACTTCACCACCGGCCCCGGCGAACGCAAGGCCCTCAACCTCGCGACCAACCCGCACTGCGTCCTCACCACCGGTACCAACGCCCTCGGCCACGGCCTGGACATCACCATCGAGGGGCCGGCCGAGCGCGTCATCGACGACGAGGCGCTGCGCCGGATTGCCCACGCCTACCTGGCCAAGTACGGAACCGACTGGGCCTTCACCGCCCGCGACGGGATGCTCCACCACGCCGAGGGCGGCGACGCCCTGGCCTTCCGCGTCACCCCGACCACCGCCTTCGGCTTCGCCAAGGGCACCTACGGCCAGACCCGTTGGCGCTTCTGACCGGCGGGCCCCGGCCCGCCCGGCCGCCGGATTTCAGCGACACGCCGGGGTATCGTGCACAACCGGAGGTCCGCTGAAAAATACCGCCCGTGGACCCTCCCGACCCCCGGCCCCACCAGCACCTTCACCATGGG # Right flank : CGCGATCGTCACGGCGTAGGCGAGATCGGCGAGGGATCCTTATCGCCCCTTTGAGGGGATTGGCCGTGCCACCCCTTTTCCGCTCTCAACGCAGCAGGTTGAGGGCGGAGAGGGTGGTGAAGATGAGGACCAGGCGGGAGAAAAGGGATTGGTCCATGCGGTGGATCACCGCCTTGCCGATCAGCGCGCCGACCACCACGGCCGGGGCCAGCCACAGGTTCAGGATCAGCGAGTCCACGGTGATCAACCCCAGCCCCACGCTGAACGGCAGTTTGAAGAGGTTGACCGCGAAGAAGAACCAGGCACCCGTGCCGAGGAACCCCATCATCGCGAACCCCGCCGACAGCAGGTAGAGCGCCATCACCGACCCGCCCGCGTTGGCGACCATGGTGGTGAACCCGGCCGCCAGCCCGAAGGCCGTGGTGCGGGCGATGTGCGGGGCGGGCGGCAACTCCCCGGGTGAGCGCCGACGCTGCTGCCAGACGTGCACGCCCACGATC # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCACCCCTTTGAGGGGTAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 13503-13869 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHS01000020.1 Streptomyces calidiresistens strain DSM 42108 NODE_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 13503 30 100.0 38 .............................. TCGAAGAACACCGACCGCAGGGAGTGGCGTTCCTCCAC 13571 30 100.0 38 .............................. ACGATGGCGTGGAGGGGGCGGGGTGCACTGGGCATGGC 13639 30 96.7 35 .................A............ GCGATGGTGGTGCGGTGGTCCGGGCCGGGCCGGGG 13704 30 93.3 39 ........G.......T............. GCGTAGTTGGCGCGCTCCGGCGTGGGTTCCTCGTTCCCC 13773 30 90.0 37 ................T.....A..A.... AGGGAGAACGGCAAGAAAATGCCGCCTTCCGCCCCTT 13840 30 90.0 0 ........G.......T........C.... | ========== ====== ====== ====== ============================== ======================================= ================== 6 30 95.0 38 GTCCTCATCACCCCTGAGAGGGGTAGCAAC # Left flank : ACCTCGACCCCGGTGGTCATGAAGGGGGACGGGCGTGTTCAGGGGGAGCATCCGCCGTCCCGGCAGCACTGGGTGCTTCCAGGGCAGGCCCAGTGGGTGAAGTACATGCAGGGGAACCTTGTCCGCAAGGCGGAGACGCTGGGTCTGGACCCGGCCGTCCGGCTGGAGGAGGTGACCTGGGTGGGGGCGTCGCGTTCTTTCCGCGTGCGGGGCGGAGTCAAGCCGGGGGCACCGGTGGAGGTGGAGCTTTCCGGGCCGCCGGAAACGCTGCGCGCCGTGTGGAGTTGGGGGCTGGGGCAGGCCAACTCCGCCGGCTTCGGCTGGATCTCCCCGCACCCGATGCGGTGAGGCGCTGTGGCCCGGCGGGGCGAGGAGCGTTCGCCCCGAGGGGGCCGGATTTCAGCAACACTCCGGGGTTTTCCGCACAACCGGAGGTTCGCTGAAAAATCCGGTCCGATCCCCGGCTCTGGCCAGCCTCCCACCAGCGCCTTTACCCTGGG # Right flank : CGTGTGGCGCTGGTGGGGGGAGGCCCCTTCATCACTCCTACGGGGAGCCTTCGAAGCCCGAGAGCGTAACGGCGGTGAGAAACGCCGCCCATGCGGCCTTCGAGGCGTGCGCCGGCTTCGCCCGCCGAGCCTTGGAGTCACGTATCAGCAGGCCGCCGCCGGAGGTCAGGCGTGCCACCTCGACGCAGTTCCCGTCTCCCGCCGTGTAGGAACTCGTGAACCATCCGGTGACCTCACGGTGCGGTGCGGTGGGGGTGTTCGTCTCCGGCGTCACTCTTCGCCTCCTCCTTGACTCGGGCGATCAACTCGGTGGTATCGCCGACCGAGAGTGCCACGGTGGACAGGTTGCCGAACAGTCGGTTCAGCCGTCGAAGAGTCAAGGCGTCGTCCTGGAACGCGGTTCTGGCGTCCGCCGACTCGGTGAAGGCCACCTCGTCGTCCGTCCCGCCATCGGTCCCGAAGAGAATGAAGGCGCCGGTGCCGGCTCCTCGCGCTCCCGC # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCACCCCTGAGAGGGGTAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1228-1744 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHS01000288.1 Streptomyces calidiresistens strain DSM 42108 NODE_288, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1228 29 100.0 32 ............................. CGGCGGCCGAGGAACCGGGGACCGAGGAGCCG 1289 29 100.0 32 ............................. GGCGTCATCAACCTGCGGACCTGGTCCGGCTC 1350 29 100.0 32 ............................. CGACCGGTGGGCAGAGCCCTGCCGGCCTCTTC 1411 29 100.0 32 ............................. GCCTCGACCTCGGGGCGGTCCAGGAGGCCGGG 1472 29 100.0 32 ............................. CGTGATCCCGTCCCGGGTGTGCGGCACCCGGA 1533 29 96.6 32 ..............G.............. TCGGCGGCGCGCTTGGTGTCGCCCTCGGCCTC 1594 29 100.0 32 ............................. CGGGCAAAAGCCCTGATCGGGGCGGGTTTCCC 1655 29 100.0 32 ............................. TGTCGATCCCTTTTTCGCTGAGCGCCTCCGTA 1716 29 89.7 0 .........................GG.A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.5 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CCGTGCTTGCACACCTCCGCCCGGCCTCCCCGCTCCACGCGGGATCGGCGGCCCTCGCACACCTTTCCCACAACCCCCCCGGAACTATTCGCGGCTTTTTGTGCGCTTTGCGCACAACGTCACCTCACCTCGTGCAAGCACCGTGCTTGCACGAGGCGAGGCGGCGGGGTGGCGGGTGGAGAAGAAGCCATGAGAGACCACCTCTCACCGGGGCGGGCGCCCTCTCCGGAGGAAGCGAGGTGGCGAGCCCCGGGGTCGCACGCCCGGCCCTGGGCTCCGGGAGGTCGTGATGCGGTGTGCTCATCAAACGCCTGAGGGCACCCTGCCCCCGGCTATCCCGTTACCCGGCCGACTGTGCGAGAAGCCGGGTCGTTGTCCGCCGGACTGGCTACGGTGGGTCCATGTGGATGACCCGGAGTTCCGGACAAGGCGGAATGTCCGTTTCCCCGCTTCTTGCAAAAACGGGCGCTCCCCGCCGGTAAACTCCCAGGTCAGTTACT # Right flank : ATGCGGAGGTGGCCTTCGCGTCGTTCTCCGGGACGGTGCCCCGGGGAATGACGCGAAGGCGGCGACGAACCCCGGTCCCGGGCGCTGCCCGGGGCCGGCTACGGGCCGGCCGGCCGGGTGCGCAGGGCGGCCAGGACCGCCGGGCCGCCTCCGCTCCACCGTCCGGTGAGGGTCGCGTCCGCCGAGGCGACCTCGGCGCCGACGGCGCGCACGACGACGAGCTCCGCCCCGCCCGCGCGGACCACCGTGGTGGGCCCCTCGTTCCGGCAGGTCGGGGTGTCCACGTCGGCGAACGCAGGAGAGTGCGGGTCGCCGTTCCGTTCCAGGCGCACGGTGGGCTCACGCGACTGCCGGTGCCCGTCGGCCTCGATCACCTCCTCGGCCTGGTCCTGCTGTCCGAGGGCGCACCTGATCATCGCCGTCACCCCGACCGGGTCGCCGCACGCGTCGTACACCCACCGCTTGCCGAGCACCGAGTGCTCGGTGGTGCCGAGCAGGAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1626-930 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHS01000022.1 Streptomyces calidiresistens strain DSM 42108 NODE_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1625 32 100.0 36 ................................ CGATGTGGCGGGCCGTGGCGTGGAGGACTTCCACGG 1557 32 96.9 35 T............................... GGTAGGTGCGGCGGGCGCGGCGTTGGATGTCGTGT 1490 32 100.0 34 ................................ TTGACCCCACGCGCACGTCCACGATGTCCGCCGG 1424 32 100.0 35 ................................ GGTAGGTGCGGCGGGCGCGGCGTTGGATGTCGTGT 1357 32 100.0 34 ................................ TTGACCCCACGCGCACGTCCACGATGTCCGCCGG 1291 32 100.0 35 ................................ GGTAGGTGCGGCGGGCGCGGCGTTGGATGTCGTGT 1224 32 100.0 34 ................................ TTGACCCCACGCGCACGTCCACGATGTCCGCCGG 1158 32 100.0 36 ................................ TCCAGGTGCCGGCGCGGATCGCCGCTTCCTGCTCCT 1090 32 93.8 32 C..............................G TGCGGATGCCGACCATGCACGCGGTCATCCGG 1026 32 93.8 33 T.........................T..... CCCGGCGGCCGAGGTGGTCGTTCCAGCCGATGA 961 32 84.4 0 ..........................TGGC.T | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 97.2 34 GGTCCTCATCACCCCTGTGAGGGGTACCAACA # Left flank : CGGTTTCCAACCTGCTTTCCCGGCTGCCCTGTTCGATCTTCCGAATCATGGAGAGGGATACGCCGGACCGGGCGGCGAGATCGCTTTGGGTGATGCCGGCCAGCTTGCGGGCTTCCCGCAGGCGGTCCCCGAAGGTGTGTCCTGGCATGGGCGTATGTCTCCGTTTTCCCCGTTTCAGCCGTCTCGGGCAGGACGGTACTGCTTTTCGGGTGGGAAGGGGAGAGTGCCCGGGCATCGCTGCCATGGTGATGGGACAAGATGCTTGGGCGGGGTGAAGTCCGGTGCAGCGACGGCCGGGTTGGTGAGGTGGCTCATCCGGCTCTGCATGGTGGGCAGTGGTTTTCTCAGGCGGAACGCCGTGCGAGCCACCGGTCATCGACGTACGCTGGCGGCCCGGATTTCAGCGACTCTCCGGGGTTTCGTGCACTACCGGAGGTTCGCTGAAAAATCGGCTGCCGAGACGGTGACTCGACTGTCCCTGACCTGGACCTTCACAATGG # Right flank : ACCCACCGAGCGGTGCGTCGGGTGGTCGGGACGAACCGTTCGTTGTCGGCGGCGTTGTTCAGGGGGAACGTGCGCCGTGTTGGGGGCCACGGCGGGACGCAGGGGAGTGGGATGCGGGCGGATGTGCGGCAGGTCGCGGAGGGCACCTATCTGGTGCACGGCAGCAACACCAACTGGGTCATCCTCACCGAGGGCGGGGAGATGACCCTGATCGACACCGGCTACCCCGGTGACCGGCAGCGGCTGCTGAACTCGCTCGCCGAGGTGGGTGGTTCCCCGGAGCGGGTGGCCGCCGTGCTGATCACCCACGCCCACAACGACCACCTCGGGTCGGCCGAGTACCTGCGGGCCGAATACGGCACGCCCGTCCTGATGCACGAGGCCGAGGTGCCGCACGCCCGCCGGGACTTCCTGCACCAGGTGTCGATCGGGACGGTCCTGCGCAACGGGTGGCGGCCGGGCGTGCTGCCCTGGGCCGTGCACGCGCTTCGTTCCGGTGG # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCCTCATCACCCCTGTGAGGGGTACCAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 11505-11148 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHS01000022.1 Streptomyces calidiresistens strain DSM 42108 NODE_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 11504 30 100.0 34 .............................. GTGAGCCACTGCATGACCGCCGCGCGGTCCGCCA 11440 30 100.0 35 .............................. AACGACCGGCCCGACCGCACCACCAACGCGAGCGC 11375 30 100.0 36 .............................. CCGGTGTCGATGTAGTAGTCGGTCAGGGCGTCCCAG 11309 30 100.0 36 .............................. CTTCGCGTTCAACGGCGCCTCCCACAGGGGGCACAC 11243 30 96.7 37 ................C............. CCCAGGGCGCCGAGCATGGGTCGGACCTGTCCGGCGC 11176 29 90.0 0 A...............C.-........... | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 97.8 36 GTCCTCATCGCCCCTAAGAGGGGTAACAAC # Left flank : CCACCGCACGCTCAACCGGCCGGTCGCCTACGACGAACTGCTCTACCTCGACGCCCTCTCCCTCTCCCGGCACTGCCTGGAGGGCACCCCGTACAAGCCGTTCCGGATCTGGTGGTGAGCACCGATGCACGTGGTCGTCGTCTACGACACCGACGCCAAACGCAACGCCCGCATCCTCCGCACCTGCCGCAAGTACCTGCACCACGTGCAGCGCAGCGTCTTCGAGGGACAACTCAGCGACGCTCAACTCCGCCGCTTCCGCGCGGAGGTCGAATCGGTCCTGGACCTGTCGTACGACAACGTCCTCGTCTACACCTTCCCGCCGGGAACCACCCCGGTGCGGATGGAGTGGGGAGCGGTCCAGGCGATGCCGACGGACGTACTCTGAGAGCCCGGATTTCAGCGACTCTCTGGGGTTTCGTGCACTACCGGAGGTTCGCTGAAAAACCGCCCCCGATCCCGACGCCTGGACCGCGCCTGACCTGGACCTTCACAATGGG # Right flank : ACGGGGATCATCAGGCCGTCACCGCCAGCCGCCGGTCGTCCTCATCGCCTCCACTAGGGGAGCCCACGCGGAGAAGGTGAGAGAGCCAGCCAGTGGCCCTCTCACCTCTCTACAGGGGCAGGCGCACCGCCTCGGCCAGCTCTCGCATCTGCGGGGTCAGTGTCCGGCGCCGCACCATGCGGCCCATGATGTCCTGCGCGTACCGCTGGTGGGGGAGCCATTGGGGGCGCCGCCCGGCGTACGTCCACGAGGGTTTCCACGGCTTCGCCGTACTGCCGGGTGCGCACCTGGGCGTCGGCCACGTCGAGAAGGTGACGGTTGCGGTGCCCGACAACGGGCGCCAGCTTCCGACCGGTGATGCGTTCGGCCACCTTCAACGCGGCATCGGGGCGGTCGCAGATCACCGCGAACTCGGTGCGCTGCATCGCCACGGTCAGCGGTCCCCACGTCCGGGTACGTCCGTAGGTCTGGGAGGCGTCTCCGCATGGTTTCTCACCCGC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTAAGAGGGGTAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 3 20632-20265 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHS01000022.1 Streptomyces calidiresistens strain DSM 42108 NODE_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 20631 30 100.0 37 .............................. TCGATGGCTTGTTCGATCTCCTCGCGCGTAAAGGTGC 20564 30 100.0 36 .............................. GGGCCGTGGGTGAGGACGAGTCGGGCGGCGTGTCGT 20498 30 96.7 39 .........G.................... ACCGCGCCGAGCGGGGCTCCATCCTCCCCGGCGAGGCCC 20429 30 96.7 35 .........G.................... GTGTTGCTGAGCACCATTTCGATCTCTCGGGTGGC 20364 30 90.0 38 .........G..........A...G..... GCGACCTGATGGGTGTGGCGGTGCACCTACCTACCGGG 20296 30 86.7 0 ......G.........G........G..T. | AT [20271] ========== ====== ====== ====== ============================== ======================================= ================== 6 30 95.0 37 GTCCTCATCACCCCTGTGAGGGGTACCAAC # Left flank : CCCACACCCCGGTGCCCGCCACCTCCCCCACAGGTGGCGGGCACCGCCGTGCGTGGGGACGTCGTCGGCTTCCGACGGCGAACTAACCCCTCACCATCCGGCGTACGATGGCGCCCCGGATTTCAGCAACACTCCGGGGTTTCGTGCACAACCGGAGGTCCGCTGAAAAACCGCCGCTTGTTTGGGCGTCTCGACGCTGCCCGACCTGGACCTTCACAATGG # Right flank : CGGCGGACCCCTCGGGCTGGCTTCGATGGTTGGTGGTTCTTGCGGGCCCACCGCAGAGGGAGAGCCCGCTACCGGTCCGTCCTTGTTGATCTGTTCTCGCTCTGGAACACGTCGCGAAACCCTCACACCGGGCGCCGAGGTACTTCCCGGCAGGATGTCGGGCCGCGATCGCCTGGGCTGATGCGCCGAGTTCGGGCGCTGAGCGGCGGTACGTCCGGGAAATTCTCCTGTGTCTTTCTGACCGAGGGCGATCTCCCGTGCGCGCATTGTCAGACCCTCCTGGCAGTCTTCGGCGTGCGCGGGTTCCGGGAAGGAGCGGAGCCCGCCTGGAGGGAGGTGCGCGGTGGTCGGGCGATCATCGGTGCATGGGGCAGGGAACCGATTTCCCAACTTCCGCCCACATCACATGACATCAGATGCTTTGATGTGCGGGCCGCGAGGGTGCCGGGTCAGGGCCCTCACATCTTTGGGGGGTGATCTGCGGTGCGATTGACGCTGTC # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCACCCCTGTGAGGGGTACCAAC # Alternate repeat : GTCCTCATCGCCCCTGTGAGGGGTACCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 4744-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHS01000393.1 Streptomyces calidiresistens strain DSM 42108 NODE_393, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4743 29 100.0 32 ............................. GCGCTTGCGGAGGAGTGGGGGGTGGCGCCGGG 4682 29 100.0 32 ............................. CGACCACCCACACCTCGTCCCTGGTTCACGCC 4621 29 100.0 32 ............................. ACGCCGCCCGCCGCACCGCCCTCCTCGCCGAC 4560 29 100.0 32 ............................. GCCGGCGAGGCGTGCACCGCGTACGCCGGTAC 4499 29 100.0 32 ............................. ACGGGGCAGGCGTGGAGCCTCACCGTGAAGCT 4438 29 100.0 32 ............................. GGCACCACCCCGAAAGCCGGGGATCTGCTGTT 4377 29 100.0 32 ............................. GCGGACGTGACGTTCCTCCCGGGGTGGGAGAC 4316 29 100.0 32 ............................. TCCTGCATCATGCCTCCTTGGCGGGTGCGGCG 4255 29 100.0 32 ............................. TCACGGCCGGTGGCGACGTCGCCGCAGTTGGG 4194 29 100.0 32 ............................. CCTTTGCCCTTGTCGATGAACCCGCCGACGGC 4133 29 96.6 32 ............................C ACTGGGTCCCCGGCGCGGCCCTGGACCTGTGC 4072 29 100.0 32 ............................. AACCGGCTGCTGCGCGTGGTCGCCCGGGACAA 4011 29 100.0 32 ............................. GGGTACTACGCGGCGATCACGCTGCCGCCTGC 3950 29 100.0 32 ............................. CCGACCGGTACCTCCGAGCCGCCCTCGCCGCC 3889 29 100.0 32 ............................. GCACCCCGGCGCAGGAGGTCATCGCCGCAGCC 3828 29 100.0 32 ............................. GATGCGCCCGTCGCGCTCAGGCCGTTCTTGAC 3767 29 100.0 32 ............................. TGGCCGCGCACCACCCAACTCAACAGTGGACG 3706 29 100.0 32 ............................. CCGGGGTGATCTCCGAGGACGAGTCCGAGGAG 3645 29 100.0 32 ............................. CAGAGCGGAGATCCAGTCGGCGTCCATCTGGA 3584 29 100.0 32 ............................. TTCGTGATGGCCCCCGGGGTGATGGAGGGAAT 3523 29 100.0 32 ............................. CCCCGCCCCCCGGCGGGGCTTTCGCCATTCAG 3462 29 100.0 32 ............................. CTGTCGTGTCGTTCGGTGTCGCGCTCGGCGAG 3401 29 100.0 32 ............................. CTGGTACCCCGAGCGCAGCGCCGTCGTCGACC 3340 29 100.0 32 ............................. GTTCGCGGCGCCGAGGCCCTGGCCACGAAAGC 3279 29 100.0 32 ............................. GAGACGCCCATGCCCCACCAGCGCACCGGTTC 3218 29 100.0 32 ............................. CTCTGCCTGCGTGATCTTGGCGTACTCCCCTG 3157 29 100.0 32 ............................. ACGACGACGACGCTCAACCTGGCGGCGGTGGT 3096 29 100.0 32 ............................. TTGGGAAAACCGGGGACCGCCCCGGCGCTCGG 3035 29 100.0 32 ............................. ATCAAACCCAATGACACCAAACGCCCCTTTTT 2974 29 100.0 32 ............................. GAGACCCCCATCGAGGGCGACCGGCTGCTGTC 2913 29 100.0 32 ............................. AACGCGATGACCCGATCGGCGCGCGGCTCGCA 2852 29 100.0 32 ............................. AACGGTAGGTAGGGCTCCAGGCTCCCGGCGAT 2791 29 100.0 32 ............................. GTGACGGTGAACTTCGCGCACCCTCGGGTGCG 2730 29 100.0 32 ............................. AACGGGGACGTCACCGGATCCCGCTTGCTGCG 2669 29 100.0 32 ............................. GAGGGTGACCCCCTCCTGACCTGCACTCCCCG 2608 29 100.0 32 ............................. TGCTCCCCTGCGTCCTCGTGGATGGTGGGGGA 2547 29 100.0 32 ............................. CCATGCGCGCAGTCTCCAACGAGCACCAGGAG 2486 29 100.0 32 ............................. GGTGGAATGACCATCACGGGGAATGTCACCGT 2425 29 100.0 32 ............................. GAATCGGCGGGGATCCGGCACCAGCCGATCGC 2364 29 100.0 32 ............................. CGATGCAGGCGGCGACGGGGATGACTCCGGCT 2303 29 100.0 32 ............................. GCGTTCAGCGCCATCCGCGCGGTGCGGCCGAC 2242 29 100.0 32 ............................. TGGTTGGGGATGGCGCCTCCCCCGGCTCCCGC 2181 29 100.0 32 ............................. CTGACCGGGTCTACATGGTGCGGCGTACCGGG 2120 29 100.0 32 ............................. ATTTTCACCGGGGCCGGGGCGCAGGCGATCCG 2059 29 100.0 32 ............................. GAAAACGCCCGCCACCGATACCTGCGCACCAC 1998 29 100.0 32 ............................. ACCACGGGTCGATGCGCAACTGCTCCCCGCAC 1937 29 100.0 32 ............................. CTGCGGCAGACCCCGGGCTGCCCGCGCCCGGA 1876 29 100.0 32 ............................. CTTTTCAACGTCGAGGGCAAGAAAGCCCTTGA 1815 29 100.0 32 ............................. GTCGTGGAAATCGTCGCCATCAATAGGGCATT 1754 29 100.0 32 ............................. CGGCTGCGATAACTTCACCGCGGATCGTGGCA 1693 29 100.0 32 ............................. GCCGACCCGACCGGCCGGACGGCTGAGACGCA 1632 29 100.0 32 ............................. CCCGGGCCGGACGCCTGCTCGACATGTCCGAC 1571 29 100.0 32 ............................. GTCCGGCGCTGATGGCTGGGTCCGGTGGCGTG 1510 29 100.0 32 ............................. CTACGGGGCGTGCTGCTCAACAAGCGCGCCGA 1449 29 100.0 32 ............................. GCCGGGGCGCTGGCCCGGCCGTGGCTCCAGCC 1388 29 100.0 32 ............................. CGCCTCACGGCCAGGAGGCACGCCCGATTCCG 1327 29 100.0 32 ............................. CGCCTCCAGACCTGGCTGCACCAGGGCAACTG 1266 29 100.0 32 ............................. TACAGACCATGGTCGATACCCCCGGATACGTC 1205 29 100.0 32 ............................. CAGACGAATGCCCGGCAAAGGGTGGCACTGGC 1144 29 100.0 32 ............................. TTCTCCTCGCATACGTGGGATCTGGAGCTGCG 1083 29 100.0 32 ............................. TTCCGGAAGGGCGTGCTCGCCCGCGACCCCAT 1022 29 100.0 32 ............................. AGGACTCGCGGGGCCTCGCGATGGTCACGCTC 961 29 100.0 32 ............................. GCGCGCTCATCCCGGCCGCGCCCGCCCCCGCC 900 29 100.0 32 ............................. CCCCACTTGCCGCCGTGGGTGGTGCTCGGGGC 839 29 100.0 32 ............................. ATCGCCAAGGGTGTGTATCCACCGGGGGCGAT 778 29 100.0 32 ............................. CAGCGGCGCGGACGGCCCCACGGGGAGCAGCA 717 29 100.0 32 ............................. TTGTCGATGTAGACCGGGGACCCGGTGAGGGA 656 29 100.0 32 ............................. CGGGCCGCCGCCGGGGCCTCCGGCGGGGCCCC 595 29 100.0 32 ............................. CCCTGAGCTGGTCTCACCGGGCGCGGACCGCC 534 29 100.0 32 ............................. GCCGGCTACGCGGCATGACCGCCCAACTCGCG 473 29 100.0 32 ............................. GACTGACCCGCCATGACCGCCGAGCACTTCAC 412 29 100.0 32 ............................. TCGCCGAGCGACGCCCAGTTGGCGCGACCCCC 351 29 100.0 32 ............................. TGCACCGGAGTCGGTGAGGACCCGGCCCCGGG 290 29 100.0 32 ............................. GCATATCTCGGGGCCACGACTCAGGCCGTGAT 229 29 100.0 32 ............................. GGGCTGTGGCACCTGACGCTGCGCCACACCGC 168 29 100.0 32 ............................. AGGAGGTCTGCGGCACCGCCCACCGGCGCCAC 107 29 100.0 32 ............................. CGCTTACCTGACCTGGTGCGAGACGGGGCGCG 46 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 78 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : GCCCCACCCTCCAACCCCAACCACCAGGAACCCAGCTCCCGAAGTTCAGCCGGCGATGACTCCACCGGCCTCCCCTCCCCCGACACCACGCTCCCCGGTGTTGAGACGCAGCCGAAACGAAACACTTCACAACCACCTTCCGGGGTCTGCTCGGTGTGCAGCCACACATCCAGACCGACAGGGCCTTGATAAACCGATCCGAGGTGTTCCAGGGGCGGGAAGCCCACCCCAGTCCTCTGACACTATGGAAGAGTGACGATGGGACGTGTTGGTCAAGTAATGGCAAAGCCCCTCTAACGCCGCAGGTCAGGAAG # Right flank : GGGGGTGTGGCACCTGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3224-4785 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHS01000419.1 Streptomyces calidiresistens strain DSM 42108 NODE_419, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3224 29 100.0 32 ............................. CCTCCGGCTTCACCCGCGAGTACGTCGCCCGC 3285 29 96.6 32 ............................A GTCCACGGCGCTGGACGGGGTGATCGGGGGTC 3346 29 100.0 32 ............................. GGGCGGCCCGACGATCCCCATCCGATGCGACC 3407 29 100.0 32 ............................. CTGTACCCGCAGGTGTGGCACACCGCGCAGCA 3468 29 100.0 32 ............................. CGGTCAGATCAGAGGGGCCGCAGGATCCCGAG 3529 29 100.0 32 ............................. ACCTCGCCGGAGCGGCCGCGCAGCCGGGCGGG 3590 29 96.6 32 ............................T CTGCGCGCGGTGGCGCGACTCACCGGGTGGGC 3651 29 96.6 32 ............................T CCGAAGGGCTGCTCGGGTGGGGCGGCAGGGCC 3712 29 100.0 32 ............................. CGCATGGCCATGCGCATGAAGGCTCAGCAGAG 3773 29 100.0 32 ............................. CCGTTCTCGTCCCGCCCGGAGTCCAGGTAGGC 3834 29 100.0 32 ............................. TGGGATCGCCCCCGTGGAGGGGACGCCAGAAC 3895 29 100.0 32 ............................. CACCATCCGGCCGGGGCGGATGTGCGTCTCGC 3956 29 100.0 32 ............................. CTGTACGTGATCCCCTCGCCGTCGGCCGAGGA 4017 29 100.0 32 ............................. ACGGATGCCAGCATGCGCACGATCGGGCTCAC 4078 29 100.0 32 ............................. TACCGCTTTCACGCTGCGGTTTATCCACAGCT 4139 29 96.6 32 ............................T GATGCCGGATTCCACGGCCTCTCGGAGACCGA 4200 29 100.0 32 ............................. CGCCTGGGGTGTCGTAGCCGCACCGCGAGCAC 4261 29 100.0 32 ............................. AGCCCGATGGACGACCCGGACCGGATCCGGCC 4322 29 96.6 32 ............................C CCAGACCGGACGATCCGCCGTCTCACGTGGAC 4383 29 100.0 32 ............................. ATCGTCGTCGAGCACACCTGGGGAGCCGCTGA 4444 29 96.6 32 ............................C CGCGCGATAACCGAGAGGGGAGGAACAATGAC 4505 29 100.0 38 ............................. GGTGGCGATATCTCCGGGGTGACCGCCGCGAGGGAGTC 4572 29 100.0 33 ............................. TCAGACACCGCCGCTCGACGGGACGCCGCGGCC 4634 29 100.0 32 ............................. ACGCCGGCGACGGCGCCCAGGATGCCCGGGCC 4695 29 100.0 33 ............................. TCAGACACCGCCGCTCGACGGGACGCCGCGGCC 4757 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 26 29 99.2 32 CTGCTCTCCGCGCGAGCGGAGGTGACCCG # Left flank : GGACATGCACCTGATAGGCCCTCTACCACCCGGAGTTCTTCCCTCTGCCGCGCTTCCCTCTGGGAATCAGCGACGTGGCCCGCGGCCCGCTCCACCCTGAGGGGCACGGTCACTCTGTCCGACATGCAGCACGGCAGGCCCACTTCGAGCTCTATGAAATTGACCCGGTAAATACCTACAGGATTCGCGATTCTGACACTCTGGGTAGAGCTGGGCATGGCAACTTCCAGGACCGCCCTGGGGCTCCGGCTCTTTTTCGTATCCAGCTCCGCGCACCCCAGACTTCTGCACTCGCCGATTCGATGTCCACCATGAAGCGGCGTCGATAGAGTTCATCCGGCTACTGAACCGAGGGCCTCTCGGTCGGGTTCGAACGTGCGGCCGAGGGATAAGCTGCCTCCGTGAGTGAGGGAACTTTCTGCTATTGCATCGGTGCTCTGGGTGGCGCCATGGTGGGTAAAGAAATTGTAAACCCTCCATAACGTTGCAGGTCAGGAAGT # Right flank : ACGCCGGCGACGGCGCCCAGGATGCCCGGGCCCTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCTCCGCGCGAGCGGAGGTGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //