Array 1 7807-6333 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIND01000160.1 Clostridioides difficile strain FD009 sequence160, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 7806 29 100.0 36 ............................. ATGATATAGAAAAAAGTTATTGTTTCGGCTTTAATT 7741 29 100.0 37 ............................. GACTTCCTATAACGTTTATACTCACATTATAAGACGT 7675 29 100.0 37 ............................. TAGACAAGCAAATTGAAGAAGAACAAAAAGCAGAAGA 7609 29 100.0 37 ............................. TTAAAAAATCGAGAATTTGAATTAGATGATGTAACTA 7543 29 100.0 37 ............................. CATTGTTCAAATTCAAACTTTCTATGAAGTTATTAAG 7477 29 100.0 37 ............................. ATTGGAAATGAAAAAAAGTCATTTAAAAATAAATTAA 7411 29 100.0 36 ............................. TGAGGGGTGCGTAAGTGATATATTTAAGCAATATTC 7346 29 100.0 37 ............................. GTTTCTAATGCTTTTTGAATTAGATTAGAACCCCATT 7280 29 100.0 36 ............................. GTTTTGTCTGGTGATAAAGAGGCAATGTCACTAGAG 7215 29 100.0 36 ............................. AGGAATTACAGGGTAATAAGATAAATATAACGGAGA 7150 29 100.0 37 ............................. CGTACGGATGTACGACGTAATTAAAATTTAATATAAA 7084 29 100.0 37 ............................. ACCCCTAACTCTACTGTGTAATGACACACAAACTATC 7018 29 100.0 37 ............................. TGTAGTTAATATAAAAATTCTTATTACAATATCATTT 6952 29 100.0 35 ............................. TAACCTTGTATTTGTCTAATACGATACAAAGCAAA 6888 29 100.0 37 ............................. CACTAGGACAGGCACTCCACTTCTAAAGCTTATACTT 6822 29 100.0 37 ............................. TAATAGAAACTGTTAATTTTATAAAAGGGTAAAAATG 6756 29 100.0 37 ............................. TGTCTTTAGAAACAAAACTAATACTATTATTACTAGA 6690 29 100.0 36 ............................. TTATAGCATCTGTATTTTGAGCAATCTCCATGAATG 6625 29 100.0 38 ............................. TTTCGACCCGGTATATTTATTTTTTCAATCAAACGTTG 6558 29 100.0 37 ............................. TACTTTTTGAGTTCATAATTTGCACACTTAACCTCTA 6492 29 96.6 37 ..........G.................. TCAGGGTATGACTATTTATCTACTAGAGAAATTGACA 6426 29 100.0 36 ............................. TGCTGTGATTTCACTAATAAAACAATTAATAATTGT 6361 29 86.2 0 ................T....T.CA.... | ========== ====== ====== ====== ============================= ====================================== ================== 23 29 99.3 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : AATAAAAAGAAAAAAGAATTATTAGAATAGATAATATAGTAAGCACTTACAAGTATGTAGGTGCTTTTAAATTTACAAAGTATTCCATTTTAATTTTATAGTTTAGATTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGTGCGATATTTGTTACAAAGTAGGGCTTAATACTTGAAATCTAAGATGTTGAGGGTGCGTGATAAGTGTTATCAATTGCACTATTGCCCGCTCACTGCAATTTTAAGAGTATTGTATATATGTAGGTATTGGAAATGCTAAGTTTATTTTGG # Right flank : TAAATAAACAAAGAAAGCACTTACAAATATGTAGGTGCTTTTATTCTGTTCAAAATTGGTCGGTTGGGTAAAATAATTAGAAAAAATTAGTAAAAACCTATTGACTGTAACTCGTTACAATATTGTTATTAATGTAACGAGTTACAGAAAAGAGGTGAATAAAATAGCAACTAAAAGTAGGGCAGAGTATATGAAAAATCGTCGAAAAGATAAAAGAGGTTTTAGTGTACTTTTAGACAAAGAAAAGTTAGATAAATTTGATGAAGTGTTAGAGGAAAAGAATCTAACCAAGAAAGAATGGCTAGAAGAAAAAATCGACGAGGAACTGCAACAAAAGGAATAAAAAATAAGGGTCACTCCCACCGACCAAAGTTTGAGTAACCCCTATGACGTATACTATCGTATATCAATTATAGTATATGTCATTCCTTAAAAAAAATCAATTATTAAGGAGTGTAATATTATGAAAAATGAATTAATGATGTTTGAAGGAAAAGAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 1005-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIND01000235.1 Clostridioides difficile strain FD009 sequence235, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1004 29 100.0 37 ............................. ACTGTTTTTACATCTTTGCAATATTTTTTAGCTAACT 938 29 100.0 38 ............................. TTATATCGTCTATGTTTAATTCTCTATCTTTATTGTTA 871 29 100.0 36 ............................. TGTTTTTGGTACAGATAAGTAATTACTATGATGAAT 806 29 100.0 37 ............................. TATACATACTTACATACTCCACAAAGCACTCCCCCTA 740 29 100.0 36 ............................. TAGCGAACCAGTTCGCAAATTCGTTTAAAAGAGGTA 675 29 100.0 37 ............................. TCGCACGAATCCGTACGACGTAATTAAAATTATATAT 609 29 100.0 36 ............................. AGACAAAAAAATAGAAAATTTAATGGAAAATGCTAG 544 29 100.0 37 ............................. AGGTGTATAATCTATTGCATTTACTACAGCTTTATTT 478 29 100.0 36 ............................. AGTGTTTAGTCGGCTCTTGCAGTGTTCTCTGTCGAG 413 29 100.0 38 ............................. AAAAAGTCAATATCACGACTCAACACATGAGCAATATC 346 29 100.0 37 ............................. CCTTTTGTAACATGTCTTTTATATCTATTACATCTTC 280 29 100.0 36 ............................. CAGATGGAAGTTGAAAGAGTGAGTGTGCCAGGCAAA 215 29 100.0 37 ............................. TATCTAAATCCATCTAGCATATTGTTTAGTTTATTAA 149 29 100.0 37 ............................. TTACTTAAAAACAGATATATTGTTATAAGCATACCAA 83 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 15 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : AAGCACTGATTTTTATGTGGTTGTATTGTATGAGAGTTCTGGAATAGATTCATATTGGGTTTTTATAGATACTGATACATGGACTGTTCATGATATACAGCGTTTAAATCAAAATGAAGAATTAGTATCATATCATGATGTAAACCCAAATACAGAAGCAGATAAGCATTATAATAGAGATGTTGATGACGTTAATATTATATTTGTTCCATCAGAAAATAATCCTTTTGATAATGATGTAGATGGAATAAATTAAATATTTATTATAAGGAGTTAAACTATAAATTGATATAAATATTTAAAAATAATGTATTTATGATATAATAAAACTATGGAAATTTTGCAGTGAGCGATATTTATGATAAAATGGGGCTTAGCAGTTGAAATATAAGGCATTGAGGGTGTATGATAAGTGTTATCATTTGCACTACTGCCCGCTCACTGCAAATTTAAGAGAGTTGTATATGCGTAGGCATTGAAAATACTCAACTTATTTTGGA # Right flank : TCGTTACTATTTCTTTCTTTCAAAGTAAACTCCTCCTTGTTTTATATTAACTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 3205-3431 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIND01000336.1 Clostridioides difficile strain FD009 sequence336, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3205 29 100.0 36 ............................. TACGAATGTTCTATAAATATAGAATTATTTGTCTGT 3270 29 100.0 38 ............................. CAAGTAATTTAAGATGGGATAATATAGACTTTGATAAT 3337 29 100.0 37 ............................. GTTACCTGCATCATCTTGTACCTGTCTTGCTCGAGCA 3403 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 100.0 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAAAATGATATATTAGATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCCAATGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGCGTTGAGAGTGCATGATAAGCGTTATCAATTGCGCTATTGCTCGTTTACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTATTGAAAATACTAAGTTTATTTTGGG # Right flank : TGAAATGTGAATTATTTTCAAATGTATGTTTTACTTGTTTTATATTAACTAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 3295-2538 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIND01000342.1 Clostridioides difficile strain FD009 sequence342, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 3294 29 96.6 36 ............................A GCAAATAAGTAAAAGAAGATTACACATTAGTATCAC 3229 29 96.6 37 .G........................... TGATTTATCAGTTTACTTTAGAAATCGCTCAGATAGT 3163 29 100.0 38 ............................. AAGACTGGAGTTAAATATACAAAAATGTTTATTGGCGT 3096 29 100.0 37 ............................. TTGCCTCTAATTCTTTGTCATTTAACTTGCTAAATTT 3030 29 100.0 39 ............................. TTTGTTGACGCTGAACTAATCGAACATGTTGCTTTGAAA 2962 29 100.0 37 ............................. ATTATTTCAGTCATTGCAATTTCATTGAACAATTCTA 2896 29 100.0 37 ............................. GTCTTTTATATCTGTTAGGTTCATCAAAGGCAATTCC 2830 29 100.0 38 ............................. GAACATAAAGATGAAGTAAATTCAGCTAAGTTAGCAGT 2763 29 100.0 37 ............................. CATATTTCGTCGCATATATCTGTATGAGGATGTGCCA 2697 29 100.0 36 ............................. AAGTCACACCGCCCTCCACACGACACTATAATAATA 2632 29 96.6 37 .......................A..... AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 2566 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ======================================= ================== 12 29 96.6 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TAAGAGGTATGCTTATCTATTGAGGTGAAAGTAGTGAAGTAGAAAGCGAAGGAAGCTGTAAATAGTTTTT # Right flank : AAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGATAACTGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTTTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAAA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1729-1952 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIND01000345.1 Clostridioides difficile strain FD009 sequence345, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 1729 29 100.0 36 ............................. CATACCAAGTCCAATATCTGCAATATTAGATTTTAA 1794 29 100.0 36 ............................. TTCCAATTTATTGTATCTCGTGAGTTAGGTAACAAA 1859 29 100.0 36 ............................. GATAGCAAAGCTTGCAAAGTAGATATTTGTGTTTTT 1924 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ==================================== ================== 4 29 99.2 36 GTTTTATATCAACTATGTGGTATGTAAAG # Left flank : TATGCTTTTAATAATATTCATAATACAATCACCTATAATTAAATTTTTATTAATTATATTCTAGCATCAAATATTGAATAAGTCATCTTCTTTAAAACATAATAAATAGTATTTTGCTCAAATTTTCAAATGCTTCTCTGTCCATCTCTTCTAAAAACTGAGAGTAGCTATTCATAGTTATTTTTATATCTGCATGACCTAATCTTTCTGAAATAGTTTTTATATTAGTTCCAGAAAGAAACATTAAAGTTGCATTATTATAGAATTTAAACATAATTAAATGTAAAAATTAATTGAAAATATTAATTATATGTTATGATATAATAAAAATATAGAAATTTTGCAGTGAGCGATATTTGTGACAAATTGAGGTTTAGCAGTTGAAATATAAGGTATTGAGAATATATGATAAGTATTATAAATTGCACTATTGCGCGTTCACTGCAATTTTAAGAGCATTGTATATGTGTAAACATTGGAGATGCTAAGTTTATTTTGGG # Right flank : ATTTTTATTACATTAAAAGCAATTCTCCTAAAAACACAAATAATTGTCACAACACACAGTCCTCATATTTTACAAATTGATTCTAAAGAAGAAATAATTGTGTTAGATATGGATGAAAGTGATAATGTATATAAAAAATAGTTAGAACTTGGAGAATACGGGGTATTAGGCTGGACCAATGAAGGTTTATATTTACATTAAGAGCACTCTTTTTATAGGAGTGCTTATTTTTTTGAAATTCATTAGCATATAAACTATCAAGAACATTACTCAATATACCTTATTTACTTCACCAATGATTATCTTACATATATTAACAATAAAAAAAGACTCTAAAAAGAGTCTTTCCCGAAAAATCTATATATTATAATATAGTTATATTTTCTGCTTGAGGACCTCTAGCACCTTTAACTATATCAAAGCTTACTTGTTGACCTTCTTCTAATGATTTAAATCCTGAAGTTTGTATAGCTGAGAAATGAGCAAACACATCATCTCTA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATCAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 488-62 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIND01000366.1 Clostridioides difficile strain FD009 sequence366, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 487 29 100.0 38 ............................. TTGCTAGAGAATGGAACTATATATCACAAAATAGTCTT 420 29 100.0 37 ............................. ATGTACAAAAACAAAGCTCCCTGGCTAAATGAAGTGA 354 29 100.0 38 ............................. TTAAACAATTGAATAAATATAATAAGATGCAACACAAA 287 29 100.0 37 ............................. TATCTTTCTTGGCTTTTACCAATCAAGTCTATGTCTG 221 29 100.0 37 ............................. TTAATGTTTGGAAGACATTACTCGGGATTAATACCAA 155 29 100.0 36 ............................. TTTGCATGGTACTAGACACACATATATGCAGTTGGC 90 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 100.0 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACATTTAAGTGACATTTAAGAAAAATATAATGCCTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAGAAGCTTTTTTATCCATATCGTTTAAAACAAGAAAATATCTATTCATAGTTATTTTTATATTAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAATTATTAGAATAGATAATATAGTAAGTATTTACAAATATGTAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTAGCTAAAGATATTGCTAATGGTGTATAAAAATTAAAGTTTTATATTAACTAAGTGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 958-60 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIND01000467.1 Clostridioides difficile strain FD009 sequence467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================= ================== 957 29 100.0 36 ............................. AATGATGAAATTTTTATTACCCCTAGTGAATTAAAA 892 29 100.0 37 ............................. TTTTGTAATCTTTTATTAAAATACTTACTTTAAGTCT 826 29 100.0 37 ............................. AGCTTTACAATATCAAAGAAAAATTGAAACATCTATG 760 29 100.0 37 ............................. AAGCATTTTGTTAGTTTATTTCAAACTTTAGAGGACT 694 29 100.0 55 ............................. CCAACTAGGTGAAAGAAGTGAACTTGAAAGCGAAGTAGTCGGGAATGACTTTTTA 610 29 100.0 36 ............................. CCAACTAGGTGAAAGAAGCTTACCCAAAAGTATCAC 545 29 100.0 36 ............................. AGTTTATCAAGTAAACTTAACATTTGAGCGTTATAC 480 29 100.0 34 ............................. GGTCATGTTCTTATCATATTAAAGATGTTCATAA 417 29 100.0 37 ............................. TCATTCGTACTGTTAGTGGTAGCTGGTCTAGTAGCTG 351 29 100.0 36 ............................. ACAGATAAGTGTAAGGAACTCCCAACAAACCCAATA 286 29 100.0 37 ............................. TATTTTTTGAGCTCGTAACCAGCACATTTAACTTCAA 220 29 100.0 37 ............................. TAATATATGACTTATAACTTTGATTTTTTGATTTTAC 154 29 100.0 37 ............................. ATCGTAATGTCTTCAATCTCAAAATGTTGATTTTCCA 88 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================================= ================== 14 29 100.0 38 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : GAATTTGAAAATAAGATGCAGACAACTATAAAACATAGAAATCTAAATAGAAAAGTTTCATATAGAATGTTTATAAGGTTAGAGTGTTATAAATTAATTAAACATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAGGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGAAGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGANNTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAATTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTGTTTTCAATGTATTCAAATATACCTATTTTGGG # Right flank : TCTCAAACTATACCATTTCCCTTGCCATTTCTTATGATTGTTTTATATTAACTAAGTGGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //