Array 1 3152-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQVR01000114.1 Bowdeniella nasicola strain DSM 19116 Scaffold114, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 3151 28 100.0 33 ............................ GCTCACGTGGACAGTGCCGCGTACCGGGCCCCG 3090 28 100.0 33 ............................ GCGATCGCGGACGAAACCTACACCTACGATCCG 3029 28 100.0 33 ............................ CGTTCACGTCAATGGTCAATGCTGCGAGTGAGC 2968 28 100.0 33 ............................ CGGGATAGGGCCGTCTGTATCAACGGAGCTCAT 2907 28 100.0 33 ............................ CACTATGTGTATATACTGGGGGTACAAGGCAGG 2846 28 100.0 33 ............................ GGTACAAGGCCAAGGGATAAGGCCCCGGCCAGA 2785 28 100.0 33 ............................ GTCCGGTAAGGCGAGCGCTAAGGCCGCGCTGGG 2724 28 100.0 33 ............................ CCAGAACCCGTCGTGGGGCGAGAGCGAGATCGG 2663 28 100.0 33 ............................ GACCGTTCTCACCGACCGTGAACGACACGGTGA 2602 28 100.0 33 ............................ TAACGCAGGCAGCACCAGCCAGCGAGCGCGAAC 2541 28 100.0 33 ............................ GTCATCCTGGAGGACACCGAAGATGGGGCGCTG 2480 28 100.0 33 ............................ CCCGAATGGTATTTTCTCCGCCGTGTTTTCGAT 2419 28 100.0 33 ............................ GATGAGGGGCGCATACTCGGCGACGTTTTTCAG 2358 28 100.0 33 ............................ TACGCCCCGCATCGTACTGGCGGTTAAAGGTGG 2297 28 100.0 33 ............................ GGAAGCACACCCATGGCTAAGTCCACGTCCAAT 2236 28 100.0 33 ............................ GGAAAAGACCATCGAGGGGGAACTCGCGCGTTT 2175 28 100.0 33 ............................ GTCGTACGCGCCCATCAGATCGCCCGGCAGTGG 2114 28 100.0 33 ............................ GGAGCCCGCATGTCGATGAACGTCGGCGAACTG 2053 28 100.0 33 ............................ GTCTTGAAAAATAACGCGTTCGCAGCGCTCGAG 1992 28 100.0 33 ............................ TCGACTCTGGCTTATGGACGAGTGGTTTGTTGA 1931 28 100.0 33 ............................ GATCATTTTCCCCTTAGCTGGAATACGGCGCTA 1870 28 100.0 33 ............................ CGGCAGATACCCGACTTCCAGCCAGTTTCGTAC 1809 28 100.0 33 ............................ GTCAGAGGTCAAGTCGGCCTATGTGCTCCAGGG 1748 28 100.0 33 ............................ CCGGCGGTTAGGTTCGGTTAGGTTGAGGGTTTC 1687 28 100.0 33 ............................ GTAGACCTCCACTCCAGTCTGGTCGCCAGCGGC 1626 28 100.0 33 ............................ GAGGTAGGCGTGTGAGGGGTCGATGACGTATCC 1565 28 100.0 34 ............................ TCTCCATCTTGTAGACGGGAAGGGTGCTGCGAGA 1503 28 100.0 33 ............................ CGAGACCGTGCCGCAGATCGATGCGCAGGCGCT 1442 28 100.0 33 ............................ CAGGACGTAACTGGTTTTGTCGGCTAGGACGGT 1381 28 100.0 33 ............................ CCTGGCGTGAGCGGCGAGTGCTACCTCGTCCCG 1320 28 100.0 33 ............................ TCTTCCCCTTATAACCCTCCGCCGGCAACTCCA 1259 28 100.0 35 ............................ ACAGTACGCGGCCGGGCAGGAACAGCGCCGCCTCG 1196 28 100.0 33 ............................ CGAGACCGTGCCGCAGATCGATGCGCAGGCGCT 1135 28 100.0 33 ............................ CAGGATTCTGACGGATACCGCTTCCGCAACTGG 1074 28 100.0 33 ............................ GAGAAGAAGTCCGTCCCGACTCCGAAGGACGTC 1013 28 100.0 34 ............................ TTTCTAGCCGTCATCCAGGAGGCGTACGGCCTGG 951 28 100.0 33 ............................ GCGCCGAATCGAGATGCAACGTACGCATATTCA 890 28 100.0 33 ............................ CGTAGGCGTTGCCACTGAGCGCGAGCGATAGCA 829 28 100.0 34 ............................ CCGGCTGCACGACGTTGTTATAGAGCCAGGAAAA 767 28 100.0 33 ............................ GTCGAATTCGCCCTTCACCCACCAGCCGTGGTC 706 28 100.0 33 ............................ TTTCGTTTAGTTTTCGGGTCATCCATTTTGGGG 645 28 100.0 33 ............................ CGCGGGCAAGACCTCGTTCGAAATCTTGTCCAT 584 28 100.0 33 ............................ GGTATGCGCATATACCTAACGCGGCATTCCCAC 523 28 100.0 34 ............................ AGAGTCGGACACCTTCGCGCATCAGATGCAGGTC 461 28 100.0 33 ............................ TCCAGGCCGGACGACGGTGTGGACGGCTCACCG 400 28 100.0 33 ............................ GGGCATCGAGTTGATCGTGACGGCGGGTCATGC 339 28 100.0 33 ............................ CCGTCCACAATCATCTTTCCCCATCGACGCCGG 278 28 100.0 33 ............................ GGAATATTCCCGCCCCACACCACGCGCACCGGA 217 28 100.0 33 ............................ CAGACGACGTGGCTCGGCTTCGGCATCGGTCTT 156 28 100.0 34 ............................ AGCGATGCTGCGAGAGTCCCTCCGAATCGATGAA 94 28 100.0 33 ............................ TGAATTTTGCACTCTATCGTCCCAAGGTAGTGG 33 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 52 28 100.0 33 CAGCTCCCCGCGCTCGCGGGGATGAGCC # Left flank : TGGGATTACCAGCAAGGGAAAGTGTCGGCTGGGACGAATTGGGGAAGCTCGTGGCCGTCGTAACGCTAGTGACAACCGCCGCCCCGCCCTCACTTCGCGGAGAGTTGACACGCTGGTTCCTCGAGGTAGCTCCCGGCGTCTACGTCGGGCAGGTCTCCCAACGCGTGCGAGAGCAGCTTTGGCTACTAATTCAGGACCACATCGGTCCTGGTCGCGCGATTCTCTCCTACTCAAACAACTCCGAGCAGGGATTTGGGTTTGAGGTTATTGGACACGACCGCCTCCCCATTGAGCGCGAAGGTTTGACCTTGATCTGGCAGCCCAGCCTGGTGAAGCAGTCGGGAGCTTCTCCAGGCGATCCTTCCGATTCCCAGTCGTGGGGTGTGGGAAGTCGACGACGGAGCTATCGAGGAAATTACGGCCGAAGATGAGATGGGTTCTCACCTAGCGAGTGAACGAAATCGGCCAGTTTTCGACGGGTTTTCGTTATGATCTTTAGT # Right flank : CGCCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCTCCCCGCGCTCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6-1681 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQVR01000147.1 Bowdeniella nasicola strain DSM 19116 Scaffold147, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 6 28 100.0 33 ............................ GAGCTCTCCATCATCTCCGAGTCGGGCCTCTAC 67 28 100.0 33 ............................ GATCATCAGAACACCTCCGCGATCCACCTCCAA 128 28 100.0 33 ............................ TACATCCCGCACCCCACCACTTGGCTAGAGCGC 189 28 100.0 33 ............................ CGCCGGACCGATGTTCAGTGTACCCTCCATAAG 250 28 100.0 33 ............................ CTGATACATCTGCGGCGGAATCGAAATACCAAG 311 28 100.0 33 ............................ GAAATGCCAGGCGGGCGGTTACGGGGCCGCTAC 372 28 100.0 33 ............................ TTAACAGTCAAGCCGCGCAGGTTAAAACCTCAT 433 28 100.0 33 ............................ GCGTGCGATCACGAGCATTAACCAAGACGCTAA 494 28 100.0 33 ............................ TGCGCGAAACTACTCACCGTCGCCGCCCTCCTC 555 28 100.0 33 ............................ GAAGTAGGAGAATATCTCATGGCCACCCCCAAG 616 28 100.0 33 ............................ GTAAACAAGACTGTCCGGATTTTCTGCGCGATG 677 28 100.0 33 ............................ GCTCACGCGCCGCACCTACCAGCGCCAAGACGG 738 28 100.0 33 ............................ CGCAGGGCGCGGAAAGAGGCCGCGTCATAACTG 799 28 100.0 34 ............................ AGAGCAGTTAATGATGGGAGGTTCGCTCAATGAC 861 28 100.0 33 ............................ CAACGACGACCAACGCACCGAGACCCAACAGGA 922 28 100.0 33 ............................ GAAGGTTTTTGACAGTGTCGCGACGGCTGTCGG 983 28 100.0 33 ............................ GAATCCGGACACCGGGTTTAAAAGCGCATAAAC 1044 28 100.0 33 ............................ TCAAGCCGGGCGCGTTCACCGACACTATCCAGG 1105 28 100.0 33 ............................ GATGGCGATTTGGCTCACCCGGCGTTGGTTCAG 1166 28 100.0 33 ............................ GACGCTCGGGGTCCTCCCAAGTGATACCACAGC 1227 28 100.0 33 ............................ GCCGCCGATCAATCGAGCCCAGCAACCCCTCGA 1288 28 100.0 33 ............................ CCCGACTCGAGATCCCAATACAGGTCGACAGTG 1349 28 100.0 33 ............................ GGCGCTGCTTTCCGCTGATGGTGTGACGACTGA 1410 28 100.0 33 ............................ GCCGCTAGGAGTTGCAGCATGACCGCGCCGACA 1471 28 100.0 33 ............................ TCTCATGAACGCATGCCTAAACGGAGTCACATG 1532 28 100.0 33 ............................ GTCGCCACGCATTTTCGGTGCACACGAGGATCG 1593 28 100.0 33 ............................ GTCCATGACGACTGTTCGTGGCTTACGTATTGC 1654 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 28 28 100.0 33 CAGCTCCCCGCGCTCGCGGGGATGAGCC # Left flank : GTCGGC # Right flank : GGGGAGAGAGACCCGATCGAGCGTTACGAGTTGAGTCCCTCATAGTGGTGTAGCGGGGTGGTCGTGCTGGACAGCAGTGCGGTCACCGCGTGATCCTCGAGTTCATCTTCTACAACTCACTCAAGAAAGGCCGCACGATGACCGCTACCCATATTGTCGACCCTGCCGGGCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCTCCCCGCGCTCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 221-1025 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQVR01000152.1 Bowdeniella nasicola strain DSM 19116 Scaffold152, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 221 36 100.0 28 .................................... GCAACCGGGCTAAATCCCTGCCACCCAT 285 36 100.0 28 .................................... TCATTGAGGCGGCAAAAATGCCGGATAT 349 36 100.0 28 .................................... GCCGTGAACGTCACCGAGCGCGGAACCT 413 36 100.0 28 .................................... TGTAGGGGCGGTCAGGGTATTCGGCTAG 477 36 100.0 28 .................................... GTTCTAGTAACAGGCGAGTAATTCGCCC 541 36 100.0 28 .................................... ATGCGGACCAGGGCACCGTCCCGAACGA 605 36 100.0 29 .................................... TACCACCTCCGACCGCTCGGCGTCGTCGA 670 36 100.0 28 .................................... TGACCGAAGTCATGCAGGCTCGCATGAA 734 36 100.0 28 .................................... TGATCGCGATCTACCAACAGTGTCAGGT 798 36 100.0 28 .................................... TGGCTCCCCCTTCCTGACATGTCGGTCG 862 36 100.0 28 .................................... GATTTCAGGGCGCGCCGCACGATGCGTT 926 36 100.0 28 .................................... AAAAAGCTTGGTTTAATCGTTCTAATGC 990 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 13 36 100.0 29 GCTGGGAATCAGTCATCCAGCCCCCTGATAAACTTC # Left flank : TGAAGAAGTGGCAAAAGACGATCCTGGCGTACTTCGACACCGACGGTGCCAGCAACGGTGGCACCGAGGCGGTCAACGGGCTCATCGAGCTGGGCAGGCGGATCGCTCGCGGATTCCGCAACCTCGAGAACTACCGACTCCGCATGCTGCTCATCACTGGCGGCCTGGACGCATCAACCCACACTCAACTCTGAAGAGCCGCGAATCCCTCATCATTTCGG # Right flank : CAGGAACCCCGAGATTCTGCTTAATCTCGGGGTTCCGAGGCGTCCAAGCGCTAGAAAATCTGAAGCTGTTGCGGGGAATCGTCGGGCTTTGACTCGATGCTGTTGATGAACCTCATCGTGCTTGCCCACTGTCGATCAGTCAGATGCAAGATGTGTACTGCACCTCCTGAAGGAATCGCCCCGCGAATCATTTTCACGATCCACCCATCCCCTCCCGCCACTGGCGTGTACTTGATGTAGACGCTGTACTGGAGCATGCAGAAACCCAAGTCCGTGAGGTGCCTCCGGAATCCATTGGCATTCCGACGCTCGACTGCTGTCGTTACTGGAAGATCGAACATCACCATGCACCACATCGGATCCTTGCTCCTGACCATTGGATGCTCCCTATGGAACCGGGTCCCAGACTGGTACTCGTAAGCGAGGGGTTTTGCCTTCCACATACTGGCCAAACCCTCGAGCCAGATTGGTGGCTTCAGTTACTACGCTCGCGGCGCTAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGAATCAGTCATCCAGCCCCCTGATAAACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //