Array 1 162126-160711 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTU01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium str. ST1660/06 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162125 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162064 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162003 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 161942 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 161881 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 161820 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 161759 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 161698 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 161637 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161576 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161515 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161454 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161393 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161332 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161271 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161209 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161106 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161045 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 160984 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 160923 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 160862 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160801 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160740 29 96.6 0 A............................ | A [160713] ========== ====== ====== ====== ============================= ========================================================================== ================== 23 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180239-178258 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTU01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium str. ST1660/06 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180238 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 180177 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 180116 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 180055 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 179994 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 179933 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 179872 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 179811 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 179750 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 179689 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 179628 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 179567 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 179506 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 179445 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179384 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 179323 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179262 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179201 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179140 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179079 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179018 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 178957 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 178896 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 178835 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 178773 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 178712 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 178651 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 178590 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 178529 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 178468 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 178407 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 178346 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 178285 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //