Array 1 1952-154 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGK01000108.1 Streptomyces sp. NRRL F-5639 contig108.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1951 29 100.0 32 ............................. GGGGTCATCGACCGCCGCCCCCGCGCGTTCTT 1890 29 100.0 32 ............................. GGCAACGGCTGGACGTACGGCACTCCCGACGC 1829 29 100.0 32 ............................. GTGTCCGGGTAGTTCGCCTTGGCCGACTTCAA 1768 29 100.0 32 ............................. ATGTCCAGGAAGTCGCCGTACGCCTTCTGCTT 1707 29 100.0 32 ............................. GCGTTCAGGTCGTACCGCACACTCGCCAAAGT 1646 29 100.0 32 ............................. GGCCCCTGACTGGGGCACATCCGGCCCCGCTC 1585 29 100.0 32 ............................. GTCTGGGAGGCCGTCTGCCGGGTCGCGGTGGA 1524 29 100.0 32 ............................. TTGCTTGGGTGGGGGTGTCCCGATGAGCGACT 1463 29 100.0 32 ............................. GTGAGCGACGCGACCGCGTCCGGCCCGGCCTG 1402 29 100.0 32 ............................. CCGTCGATCTCCTTCGGGCTTCCGTCTGCGCC 1341 29 100.0 32 ............................. TCGGCATGCGCGGCGGCCCGCTCCGCGTCGGT 1280 29 100.0 32 ............................. CAGGCACGCATGCTGGCGGCTCGTGCCCGGCG 1219 29 100.0 32 ............................. TTCAAGCTGACCAATGAGCAGGTGGCGCGCCT 1158 29 100.0 32 ............................. AAGGAGGCGGGGCCCGTGCTCGGATGGTGTCA 1097 29 100.0 32 ............................. CCGTACGAGACGAGAGGGAGAACCACAGTATG 1036 29 100.0 32 ............................. CGCTCCGCGATCTCGGGGGTGGCCGGGACCGC 975 29 100.0 32 ............................. CGGGGAAACCTGGAAACTCGCAGGTCAGAGCG 914 29 96.6 32 .................A........... AGGTGACGGCCATCTACGCGACTCACCGGACT 853 29 100.0 32 ............................. GGCACCGGGTTCCTGTGCGTCAACGACGGGCC 792 29 100.0 32 ............................. GCTCGCTCCGCTTCGGCCCTCTCGGCCGCCTC 731 29 96.6 32 ............................A GGTTCGGCTCCAGCGAGAAGAACAGAACGGTG 670 29 100.0 32 ............................. CTGCTGCCCACCCCGAAAGCCTCGGACGGGCC 609 29 100.0 32 ............................. GGCCACCCCGTCGCCCGCCCGATCCGCTCCCA 548 29 100.0 32 ............................. TCTACGCAGAGAGCGTTCTCGCTGGGGAAGGG 487 29 100.0 32 ............................. GCCACCGCCAAAGCCTCGGTGAGCCCGGCGGT 426 29 100.0 32 ............................. GCTTCTCCAGCTCTCGGGCCCGCTGCTGCATA 365 29 100.0 32 ............................. CACGTCGCCGGCGAGTTGGTCAGGGACTCCGC 304 29 100.0 32 ............................. CAGCTCGGTATCAACGTCATCCGACCGGTGGC 243 29 96.6 32 ..............T.............. GTTCTGCGCGTCGGTGACGAGCCGCGGGCGCA 182 29 96.6 0 ......T...................... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.5 32 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CATATGCCCGACTCGGCGAAAGTGAGTAAAACCCGCCCCCACCCGCAGTAAAACCCCACGTCGCGCCC # Right flank : CTCTGAGAGGACGACGGATGATCCGCGAAGCTGGTGCTCCCCGCGCCCGCGGTTCGGGGAGTGCGTACAGCCTTGATGACGTGCGGGAGTTCCTGCGTCGCGTCAGGCTCGACCCGGACGAGGCGGACCTGCACGAGCAGAAGCTGATCGAGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 240181-239238 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGK01000001.1 Streptomyces sp. NRRL F-5639 contig1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 240180 29 100.0 37 ............................. AGCACTGGCAGCGCGCCGAAACAGACGTGATCACGGA 240114 29 100.0 36 ............................. GACAGCAGGTCCCCGACGGGGCGGGCCTGTTCTCCG 240049 29 100.0 36 ............................. CGGTGCGTCCAGCCCGGCGCCATCACGGCCTCCAGA 239984 29 100.0 37 ............................. CTGAACCCTGCGACGCTATCGCGGGGCCCTACCGAGA 239918 29 100.0 40 ............................. TCACGGGCGCTGTCACGGCGGCGGGCGGGGTGATGCAGGG 239849 29 100.0 36 ............................. TCGTCGGTCACCGTCTCCACGTGCCCGCGCGGCACC 239784 29 100.0 36 ............................. ACATGTCCAAGGGCTTCACCGACTTCTTCGACACCA 239719 29 100.0 35 ............................. GTGCAGATCGGGCGGTTGGGGTTGCTGTCAGGTGA 239655 29 100.0 35 ............................. TCCAGCGGAGTGCGCACGTTCGCGCCCGCTGTCAC 239591 29 93.1 34 ...................AA........ TCCGAGCAAGGACGGCGATCCGGACGACGCGGGA 239528 29 100.0 35 ............................. CGGGGAGCAGGCAGCCGCGTGGCAGACCAGGCGCT 239464 29 100.0 37 ............................. AGTAGCGGGGGTCACATGACCACTGGGACACGAACTG 239398 29 100.0 38 ............................. CCGAGGCGCTGTGCGGTGATCTGACGGCCGTGCAGCCC 239331 29 100.0 36 ............................. AGTAAGGGTCGGCACCAAGTCTTGCCCCTTACGCGG 239266 29 86.2 0 ...................C.CG.C.... | ========== ====== ====== ====== ============================= ======================================== ================== 15 29 98.6 36 GCCGTCATCAGCCCTGGAGGGTTCGCAAC # Left flank : GAAGAACTCGCCACGACCATCTACCACCGTGCCCTCAAGCGAAAGGTCACCTACGAAGAACTCATCCACCTCGAGGCGCTGAAAATCGTACGTCTATGCCTCGAAGGAACCCCCTACAAACCCTTCCGACCCTGGTGGTGACCCCTCATATTCGTCATCCTTGTTTACGACACAGCCACCGAACGCAACCCCAAGGTCCTCAAAACCTGCCGCAAATACCTCCACTGGACCCAACGCAGCGTCTTCCAGGGCGAACTCACCAAGGCCCAGTACCGAGCCCTTATGACGTTGCTGAAAGACACCATCGACCCCGCCTACGACAGCATCGTCACCTACACCAGCCGATCACCCGACCTCATCGAAACAGCCACCCTCGGCACACACCTCGGAGGCCCCGGCGACATCCTCTGACCAGCACGTTTGCACTACCGCCGAGTCGCCGCAGAACGCACCGGAACAGCTCGACGGAATTGGCCCCTGACCAGGTGCTTTACTCTCGG # Right flank : GTGAACCCGGCCGCGGTCTCGACAGGTGTCTGCGGCCCTCGCTTGCCGTCAGCAACGCGCAAGGGTTGCTCGCGGCGGGCCGGCGGCTCCAGACACGGTGCCGCCGCGCCCCGTTCCCGGCCCACTGAGCAGCAGGCCGGAACAGGGCGCGGCGGGGTCCGCGTATCAGATGTCGCGGAACGTTTCGATCTGCGCGCCGACCTCGTTGAGGCGCTCCGCCAGGTCCTCGTAGCCGCGGTTGATGACGTACACGTTGCGCAGCACCGAGGTGCCCTCGGCCGCCAGCATGGCCAGCAGGACGACGACGGCGGGGCGGAGGGCGGGCGGGCACATCATTTCGGCCGCGCGCCAGCGGGTCGGGCCCTCGACCAGGACGCGGTGCGGGTCGAGCAGCTGGAGCCTGCCGCCGAGGCGGTTGAGGTCCGTCAGATAGATGGCCCGGTTGTCGTAGACCCAGTCGTGGATGAGGGTCTTGCCCTGGGCGGAGGCGGCGATGGCCG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGTCATCAGCCCTGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.10,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 248756-249629 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGK01000001.1 Streptomyces sp. NRRL F-5639 contig1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================= ================== 248756 27 100.0 38 ........................... GGGTGCTGGAGTGCGGCGAGCATCGCGCGGAACGCAGT 248821 27 100.0 38 ........................... ACCTCGGGCGAGGCGGCCTCACGGTAGCGGGATGTCGT 248886 27 100.0 38 ........................... CCCAGCAGCTGGCGGACATCAAGCTCTAGACACGTGGT 248951 27 100.0 39 ........................... GCCGTTCCTACGGAACTTGCCTACGTCACCGGTACATGT 249017 27 100.0 38 ........................... GGGCCCTGCCGCTTCCCGAGCCGCGGCACTCCGCGGGT 249082 27 100.0 36 ........................... GGCGGCTCCTGTTCGGGGGGTGGGGTGGGTCCAGGT 249145 27 100.0 38 ........................... GTTGGCCGCCCGGAGCGCAGTGGTGGGCGTAGTTCAGT 249210 27 100.0 40 ........................... CCGGATACCCGGCGGGAGGAGGCCAGGTGGCTGACGAGGT 249277 27 100.0 38 ........................... CTGCCGTACAGCGCGGGTCCGAACGGGCCGTCGGGGGC 249342 27 100.0 38 ........................... TCGAGGCGTACGTACTCGTACCGGGCCGATTCCCGGGC 249407 27 100.0 38 ........................... ATCCATGTCGGCTCGACGCGGAAGGCGGCGGCGAGCGC 249472 27 96.3 41 ..........T................ GCGGGAGCTGCGTAGAGGGGACCTTGCCGGAGGCGTCGAGT 249540 27 100.0 36 ........................... GTGTGCGGTGTGGGCATGGGGGGTCGGTGCTGTTGT 249603 27 85.2 0 ......A.C.....C.......A.... | ========== ====== ====== ====== =========================== ========================================= ================== 14 27 98.7 38 CGTCATCAACCCTGGTGGGTTCGCAAC # Left flank : GGCCGCAAGCGATGACCACGCCAGCCCTCGTCATGCAACGCCCGGGCCAACTCCGCATCCGCTGCCCCGAGGACCTCATACGCCACACCCCGGGCAGCGCCGTGTACGTCCCGCCAGGCCATCTGCGGCGCATCGGCAGCAACATCCACCCTGATCCGCACCTTCTCCCCTCCCCCACAAGGCCCTTCGACCACCCAGTCCATGCTCCGGCACTGTACGCACCTGATCCCCGCCTTTGGGGTGAATACGAAAATATGGGCTCCTACTGCCAGTTCGCGTGCTATATGCGCCCCGTGGCCGACGGCCTCGCGCCATGGGAGGGAACCTAACGTCTCCCACTGACACCGCTTATCCTGGCGGGCGGACGGAACGATGAGAGTTGCGCCGCGCCTGCCGACCGGCCGCCTGACCTGCGTGTGTGCACTACCGGCGGGTCGCTGCAGAACAGGCCTTGTGAAGCCCGCCGAACCGCACGATAACCAGCGCCTTTACCCTGGGGT # Right flank : CACCCGAGTCGGCCGGCCTCGACGTGGCTGGAGTTCTGGTCATCATCACGGAGGGAGTCGGCCACCGGGAGAGACCAGTGCAGGCGGCGCCACCCGAAGCGGGCTGGGAGGCCCCGGACTTGCTTGCCGCGCTCTCGGTGTGAGGACCGCGGCTCTCAGCAGTCCCTCCCGCCCTCGCAGGACAGCGCGGGGCGCCAGCCGGCACGGCCGGTCTACGGCGTGCCGCCGGAGTCGGGTGGGGCCGGTCGGGTGAGGCGGGTGAGGTGGTCGCGGACCTCGCGTGCCTGGGGGTGTCGGCGGTAGGGGGCGAGGGAGCGCCGCAGGGCGCTGAGTGCTGTCGTGGTCCGGCGGGAGGATGTGTGCGGGTAGTGCGCGGCGGCCTGTCGGCACTGGTCCAGCGCGGCATCCAGTTGTCCGAGGTCCAGCAGCGTCCTGGCCAGCTGCGCGTGGGTGAGCAGGCGGGAGACGTGGTGTGCGGACGGGCGTGCGGCCAGTGAGTC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCATCAACCCTGGTGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.30,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 36611-36024 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGK01000022.1 Streptomyces sp. NRRL F-5639 contig22.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================== ================== 36610 28 100.0 43 ............................ CGCCAAGATCGCGCCGTCGATCCCGAGGGGGAACACCTGGCTG 36539 28 100.0 33 ............................ CGCCGTTCCCTACCGGGCCCGAGCCCGCCGGGT 36478 28 100.0 33 ............................ CGCGGAGGTCATTCTGTGACGGCGGAGACGAAC 36417 28 100.0 33 ............................ CCCCTGCCTGACCAGCACGTTTTCCGGAGTTGC 36356 28 100.0 33 ............................ CCGACCGAGACGTCCCAGGAGCCCCGGTACTCC 36295 28 100.0 33 ............................ CGAGCCCCGCCGGCGGGTCTACGGCAGCGACCA 36234 28 100.0 33 ............................ CGGAACCCCGGCGGCGGAGTTCGCGGAGCAGCT 36173 28 100.0 33 ............................ CCATTCCGTAGGGCACCAGGTTCGGGATCCGTG 36112 28 100.0 33 ............................ CGCCACCGCCAAAGCCTCGGTGAGCCCGGCGGT 36051 28 96.4 0 .........................C.. | ========== ====== ====== ====== ============================ =========================================== ================== 10 28 99.6 34 GTGCTCCCCGCACGCGCGGGGTTGGTCC # Left flank : CGGCGCAGGCGGGGCGGATCGGCGTCCGGGGCTGCCTTTGTCCAACCCGCTGGCGCCTCCGCGAAGTGACGTCCGACGCGCATACCCATGGGTTGCCGCGCCAGTCGAAACGGAACGCGTCTCGTTCGCTCCTACCGGCCGAATGCGGCCAGCTCCACGAACAGTTGCGCCACAGCCACCAGCAGCGCCCACCGGCACCAGTCCACACGGCGTCGGTCCGCGCCCAGCTACCCACCTCCATGGTCCGGTTCCCGGGACCGTAGAACGGGGCACGAGGTACCCGGAGCGGGGTATCCACAGGCAGGCCGGATCGTCATACCGGAGGCTCACCCTTTGGGTAAAGGGCTCGTCGGACTGGAGGCTGACCAGCCCTCGCAGTGGCCCAGCTGGCACCCTTCGGCAGGGTTTCGACCTCTAATGGGAGAACGCCCGGAAGGTCCGAGTCGTGGGAAGTGGTTAGAATCGGCCCTCGACTGGCGAAACGCTGCTGGTCAGCCTCT # Right flank : CAGGTTCCGGACGTCCGCGTCGGTGATGGTGAAGTGCCGCCTGTCCCCGCATAGTGGCCCCGCCGGCACCACTCGGCGGGGCCATCCACATGGTCGGTGCGCTCCAGCGCCACGTCCAAGCGCCCGCTCGGCCGCGCGAAACCTGCCTCGGTCACGCCGCGCAGGTGCTCCAGCTCGACGGCGACCGTCGCCTCTTCCGGTACCCGCATCCCTTCTGCTCGCAGAGCCGAAAGCAACTGCGTCCTGAACGGCACGTGCACGGGGGCGCTCGTCGCCGCTGACGACGGAGGTGACTGGCGCCGCTCGCCGGTGGCCGCGTGCACCGAGCACGGTTCGGGGATCGGCACCCCGGCCCCGTGGGAGGTGGCCGCGTCAGCGACCTGCCGCCCGCCGGCTTGCTCTTTCCGAAGGAACGCACGGGAGTGTGGGGGAGGGGCGCGTGAAGGAGCCGTCTTTCGGCGAGCTGAGGGACGGAGTGCGCGAGGCGGGGCCGTGCATGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGTTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACACGCGGGGTTGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10200-9195 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGK01000025.1 Streptomyces sp. NRRL F-5639 contig25.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10199 29 100.0 32 ............................. CCCCACGCGCGCTTGAACCGCTTGCGGAACTG 10138 29 100.0 32 ............................. CTGCTGACCCGTTTCAGCCTTCGCGTGGCCGG 10077 29 100.0 32 ............................. CTTGTGCATCCTGCGCATCCAGAAGGGGCCCT 10016 29 100.0 32 ............................. GCGCAGATGCCGACGACGACTCCGATGCAGTA 9955 29 96.6 32 ............................G CCGACCATAACCACGGAGGTGACGGGGCGGCC 9894 29 100.0 32 ............................. GCTCGCCCCGGTCGTGCTGCCGGACACGGTGA 9833 29 100.0 32 ............................. AGCTGGAGGCGGACGTCCAGCATCCCGCCGAG 9772 29 100.0 32 ............................. GACACGATGGGCCACGCGGCCGGCGACGCCGT 9711 29 100.0 32 ............................. TTCCCCGTTGACCCGTCCGTAGCCGAGATGGT 9650 29 100.0 32 ............................. TGGCGCGCGCACCGGGCCCAGGTCAAGGAAGA 9589 29 100.0 32 ............................. GGAACGGCGAGCACCTACCGGAACGCCGCTAT 9528 29 100.0 32 ............................. AAGCCCTCACCGTGCTGGAGGCCCCGCCCAGC 9467 29 100.0 32 ............................. TCCCCGAAGATCGCTCCGGGGGAGTTCGGGGT 9406 29 96.6 32 .....T....................... CGTTCGAACTCAGGCGACCCCTTCAATCCGGT 9345 29 100.0 32 ............................. GAGGAGGACGGCGTCGCCGAGCTGGTCACCGT 9284 29 96.6 33 ........A.................... CGAGGCGATGGGCATCCCGGAAACCCCCGACGA 9222 28 89.7 0 ................-.......A...G | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.8 32 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GAAGACCCGGAGGAGGAACTGCTGCGCAAGGATTGGCAAAGCTTCACCGCGACGTCATCATCCTCACCACCTGCCCCGCCGGACTCCGTGGCTTCCTCACCCGCTGGCTTCTCGAACTCTCACCCGGCGTCTTCCTTCGGTGCCCCCTCCGCCCGCAATCCGCAGCATCCTGTGGGACGAAGTCCGCCAGTAGGCCGGGCAAGGCCGCGCACTCCTCGCCTACCAGACCGACAACGAACAAGGCTTCGCCTTCGAAACCCACAGCCACCCCTGGCACCCCATCGACCACGAGGGACTCACCCTCCTCCACCGCCCCACCACCACCCCCAGTGCGCCGGCTGCCGCTCCCGATACCCCACCGCGAGGCTGGAGCAAGGCAGTTCAACGCCGCTGCTTCCGACGCGGATAGTCGCATCCAGAAACAGGTGCCCCATATGTCCGACTCGGTGAAAGTGAGTAAAACCCGCCTCCACCCGCAGTAAAACCCCACGTCGCGCCCT # Right flank : TGTCGAGACTGTCTTCATGCGGGAGAAGGCGTGCTCGATGCGAGGGCGGGTTCTGCGGTGGGAGGCATGGTGTTCCTCTTTCCAGGTTGGCAGTTCGGTCTGGCCATGCTCTCGTCGGCGTGCAGTCGTTGCGGCTGCCGGGCACCGGTCGGCCGACGGCGACGACCCGGCGGGCGCCGGCGCCGATGACGACCCGTTGGCTGGTCGAGTACCGGTAGTTCTTCGACTGCTCGGCGACGGTGTTATCGCGGCTGAGGACCAGGGCGCCATCCAGGACCAACCTGGTATCGCTGCATGAACGCCTGTGTGCTCGTAATGCGTAGATTAAGGGTTCGATTCCCTTAGGCGGCTCGGACGAAGCCCAGGTCACAGATCCTGCGACCTGGGCCTTTCTGTAGTTCAGTCCCTTCGTAGGTGCGGCTCGGTGATCCTTACCGTCCTGCACGGGCTCTGAGTGGACGAGCCGTGGACAAGCGTGCAGTGCCTGTGCGGAAGGACGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 61338-60696 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGK01000003.1 Streptomyces sp. NRRL F-5639 contig3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 61337 29 100.0 32 ............................. GGTCACGCAGGACGTGGGCCCGAACCGGTTTT 61276 29 100.0 32 ............................. GCAACGGGGGCCGTCGCCTCGGCCGGGAGCCG 61215 29 100.0 34 ............................. GGGGTCATCGACCGCCGCCCCCGCGCGTTCTTGT 61152 29 100.0 32 ............................. GGCGGGCGGTGTGAACGCGCGGAGCGTCCGGC 61091 29 100.0 32 ............................. GACGCTCCTGCCGCTGGAGTGGCGCACCCGCC 61030 29 100.0 32 ............................. GCAAGAGCACTCGCGTGGGCCGCGAAGGCGAG 60969 29 100.0 32 ............................. TTCTCGACCTTCGTGCCCGCGTTGTCCCGCAG C [60964] 60907 29 100.0 32 ............................. GGCAGTCACATGACGTTCAACGGCGGCATGAC 60846 29 100.0 32 ............................. GAGTCTCTTCGGCTTCGGCGTGGGCCTGCACG 60785 29 100.0 32 ............................. GATCCGCGTCTCCCGCGACTCCGGCCACACCT 60724 29 93.1 0 ...........G.C............... | ========== ====== ====== ====== ============================= ================================== ================== 11 29 99.4 32 GTGCTCCCCGCACGTGCGGGGATGGTCCC # Left flank : CCGGCGTCGCCTTCCCTACGTCGTGCACCCCGGCGAGCCATACGGCCAACGCACGGGCGTCGGCGAACCCACCGGGAAGGGCCTGGGCAACGAGGCGCTTCACCTGCTCGGGCAACCACCGGTCCCAGAGCAGCCCGGCCGTGGCAGCGCTGTCGGACATGTGCCGCCAGAGGGGTAGGTAACCGTCATCCGCATAGGACGACTTGGCCCACGCCGCGCGCGCCCCCGGGGACAGCCGCTTACCGAGCCGCCGCCCCCGTACTTTCTCCCCCACCGCCTACCTCCGCTGTTCCCGGCCCCGTCACACGAATGACGCCGGGCTCGAACGCCACCCCAACCGGCAGTATGCGCACGCGCGGAGCAGTCGTGGGGAGAGTTGACAATATGGACCGGAACTACTCAGCCCCGCGTCCCTTTTGAACTGTTGGTGAGGTATGCACCATTCAATGAAAGTGAATCCCACGGCCACCGGCAATGGATAAACCCGCAGGTCACCGAGT # Right flank : CTCCACGGGCCGGGCCAGCAGGGCAAGTCCAGACCTGCGGAAACGCTCCGGAGGAACGTTTCCGCAGGCCAGAACGATTCTGCTGGGTGGGGCGGGTGGGACTCGAACCCACGGCCGACGGATTATGAGTCCGCTGCTCTAACCGGCTGAGCTACCGCCCCGTAACGGCGCGCCGCGCACGAATGTGCGCGCCGTCTGCCGCAGCATAACCGTTCATAGGATCTGCCGCCCGCGGCGGGGGAGATCTACGCAGGTGAGGACCCCGGACAAGGGGTGAACGGTTCCCGCTCCCGCCGACTTCCGCGAAGATCGCCGGAAAACGCCGGAAAAGCACCCGTCGGCTCCGCCCTCCCCGGCCGCCCCCTCGCCGCGCGGACAGCGCCGGCCGCATCACCGCGCACCGGCCCCGGCATACCACCGCGCACCGCCCCGGGCGTACGGCACCGCCCCAGGCATACGAAAAGGGCCCCCTCGGGGGCCCTTTTCCTTCTTGCTCCCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 70853-71127 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGK01000003.1 Streptomyces sp. NRRL F-5639 contig3.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 70853 29 100.0 32 ............................. TTGCTCCGACTCCGGAGGCGTTCAGGGGGTCC 70914 29 100.0 32 ............................. GAGCGGCTGGTGTCGGAGGCGCTGCACTTGCT 70975 29 100.0 32 ............................. AAGCCCGGCGGCGGGCTCCCCGCCGTCGTCGG 71036 29 96.6 32 ............T................ GCGGTCGACCACGTATAGGCGTACGCGAAGGG 71097 29 79.3 0 ......T..........CC.A.C...T.. | CA [71114] ========== ====== ====== ====== ============================= ================================ ================== 5 29 95.2 32 GTGCTCCCCGCGCATGCGGGGATGGTCCC # Left flank : CGACTCCGTCAAGCTCCGCACCGACCACGACGGAGAAGTACCCGGCGGCCTCAACCACGGCGAGGACCCCATCTGGTGACCGTCATCGTCCTCACGAACTGCCCCGCCGCGCTACGGGGCTTCCTCACCCGCTGGCTCCTCGAAATCTCCCCAGGCGTCTTCATCGGCCGCCCCTCCGCCCGCATCCGCGACCTCCTCTGGGACGAAGTCACCCAATACTCCGGCAAGGGCCGCGCCCTCCTCGCCCACACAGCCGACACCGAGCAGGGCTTCACCTTCCGCACCCACGACCACGCCTGGCACCCCACCGACCACGAAGCCCTCACCCTCATCAACCGCCCCAAGCCCCGCCTCTCCCCGAAGCCACCACCGACGACGGGTTGGAGCAAAGCGGCGAAGCGACGCCGGTTCGGCGGGGGACCGAAATGAGAGGTACGCACGATTCAACGAAAGTGAACCCCACGGCGGCCCCCGCCGGATAAACCCGCAGGTCACCGAGT # Right flank : CTCGCGCGGGCGAGGCTCGGCACCGGGACCACTTCAACGCATCAGTCCGCCGCGCAGGCTTCTCGCCTGTCGCCGCTCCAACCGCGAGTCCGGACGGAGCGAGGACGCAGCCGGCCGCCGTCGGCGGGTTCATCGGGCGTTTGTGCCAGCCCAGCGACTCGTCCTGCATCTCGGGGTTCCACGCCGCGACGGCGGATTCGACCGCCTCGGGGTCGCGCGGGAAGCACCATGCGTAGTCGTACCCGTAGGCATGCTTCCGAACGGCGAGGAGCCGGACGCCGAAATCGCATCCACAGCCACAGGTACATGTGGTGCGGTCGGTGCCGAGGACGTAGTCCTCCCATGTCTCGTCGCGTACGCGAGCCGACCGCCCGGCAGCTTGGTGACCTTCACGTGTCTCATCGGGATCGGTGCCGTGCGGCTCGGCGAGCCGCACGGGGGTCGGGGGCCGGTCGCGGGTGACCAGAGCGCGGGCCACGGCCCTGGCACCGTAGCGGGCG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 245-93 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGK01000057.1 Streptomyces sp. NRRL F-5639 contig57.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 244 29 100.0 32 ............................. GGCCACCACCTGGCCACGGCTCACCCCTCCTC 183 29 100.0 33 ............................. ATCAATCTGCTGAAACAGCAGCAGAAGCAGACC 121 29 69.0 0 ..............T....TTTG..GAGT | ========== ====== ====== ====== ============================= ================================= ================== 3 29 89.7 33 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : ACTGGGGCAGGGACTACCGCCGCGGCCCCAGCCCGCTGATCGCCGTTTACCCGGCGGGCACGCCCGATGACCGGATCACCGGCGACCGGATCATCGACAAGGAGCACAGCCGGATCTCGATCTCCTGGCCGGTCGCGTAGAGCGCGCGCCTGGTCAGGTCTCTCGCACCATCCATCGGACAGAGAGAGGGTCACATGACTACCGCCGTACTTGACAACCTCACCGCACCGGCTGAGCTCCCGGTGGAAGACCTCACCGACGACGAGTTCCAGTTGGACGTCCGCGTCGTCGTCACCCAGAGCCCCGTCTACAACTTCAACTGCCCGACCAGCGACGGCTGCGGCCAAACCTGCGCCAACGGCGCCAGCGCTTGCGCCTCCACCATCGAGGACGCTGCCTGACGCTCCTCTCCGGCCGCTCGGGGCGGCAGCCGGTCGGCTGCCGCCCCGAGCGACACCCGTTGCACCCCATCCCGTACGAGAAGGGGCACCAGTGGCACG # Right flank : TGCGTACAGCCTTGATGACGTGCGGGAGTTCCTGCGTCGCGTCAGGCTCGACCCGGACGAGGCGGACCTGCACGAGCAGAAGCTGATCGAGTG # Questionable array : NO Score: 4.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [2,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCCCGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5741-5468 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGK01000092.1 Streptomyces sp. NRRL F-5639 contig92.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5740 29 100.0 32 ............................. CGCTCGGGCGGGGTTCCGGCTCTCAGTGTCGC 5679 29 100.0 32 ............................. TCCAGATGAAAAAGCTGGAGCTGGAGGAAATG 5618 29 100.0 32 ............................. ACTTGCCAGGTCTCGCGGAAGTGCAGCACCCA 5557 29 96.6 32 .........................T... GCCCGGTGCATGGTCGAGCGGCCGTAGCCGGT 5496 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGGTCCCCGCACGCGCGGGGTTGGCCCC # Left flank : GGTACCGCTCCGCGCAGTGCCGGACATGATCAGCCGAGGCGGAGTGCGCTCGGCCAACGCCGTGGCCGCACTGCTGATGCTGCACCGTCTCCGGCTGAGCTGACCGGCCGGAGAAGTCGAAGATGCAGGACAGTCTTGCCGGGCACGCGGTGGTGGCATGGCTGCACCGGTCGTCGTCCATCCGCCCGACGTGCGGAGCGTCGGCCGTGCCCTGAGTGCCGGCCGCCCCCTCCTGGGCCGGCAGGCTTCGGCGGGCCGAGGGGGCGGGACGCGGGGCGCCTAGAGCGGGGTTTCCACAGGCAGGCCGGACAGTCATACCGGAAGCTCACCCCTGTGAATAACAGAAGCTCGCAGGGCCAGCCCCTGACGAGCCCGAAGCGGCCACGTGGCACCCTTCGGCGGGATTTCGACCGTACGAACGAGAAACACCCGGAACGTCCGAGTCGTGGGAAGTAGTTAGAATCGGCACTCGGCTGGCGAAACGCTGCTGGTCGGCGCCT # Right flank : TGGAGCAGCGCCGACACGGCACCGGAGGTGCGTGGTCCCGCCGACAGACGGCTCGTTCCCCCCCCGGCTGTGTGCAGTCGTGCTGCTGGGTTCAGGCGGGCAGGTGCCAGGAGGGGCCCTCCGGGCTGCCGAGCCAGACCACCTGCTCTTCGAGGGTGATGGTCGCTCCGAAACCGGTCAGGTCGGGGCTGCCGTGCCGCTCCCAGCTCAGCAGCGCGTCCTCCACCTGGTCCCACAGGGCGAGGGGCCCGTGCTGGTGGACGGTCCATCCGCCGGCTGACGGTTCGGTCCACGCCTGGGAGCCGGTGGCCACGTCCCACAGCACGGGCCCGTCCCCGGTGGAGAGCAGTTCGGCCGAGGGCGCGGCGAGCTGTGCGACGAACGCGCCGGCCCACTGGTCGGTCAGGGCGGGGTCGAGCCGGGCCGGGCGGGTACGGCCCTCATGCCGGAAAAAAGTGCTGTGCGGGGGGCGTTCGTGGGGGCGCGCGAGCATGTAGGTG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCACGCGCGGGGTTGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGCCCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4357-3900 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGK01000100.1 Streptomyces sp. NRRL F-5639 contig100.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4356 29 100.0 32 ............................. GCGTGACCTCCGGGTTCCGGGCCATGCCGACG 4295 29 100.0 32 ............................. GCGGTGATCTCGTCCATCACTCTCGCCCCCAC 4234 29 100.0 32 ............................. CGTCGCGGGAACGACGATCCGGCCCTGATCCA 4173 29 100.0 32 ............................. GACGGGCCGGGGCTGGCGAGTGCGCTGGCCCG 4112 29 100.0 32 ............................. ACGACATCACATCCGGCCGCACGGAACTCGTC 4051 29 100.0 32 ............................. AGGCGTAGCGTGGCGACATGGCAAATAAGAAG 3990 29 93.1 32 .................A...T....... ACGAGGCACGGATGGGCTCCGCCCAGTACGTG 3929 29 93.1 0 .................A.......C... | G [3903] ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CATATGCCCGACTCGGCGAAAGTGAGTAAAACCCGCCCCCACCCGCAGTAAAACCCCACGTCGCGCCC # Right flank : GCACGGGGGAGGGCTTAGCCGTCGCTGCGCGGCTCGATCCTCCGAGGCGACCGCTACCGTCGCTTCCTTCTTTCTGCTCTCACCGGCTCCTGTCCTGCGGTTCTGAGGGCGAGGCGGTGCAGCCGGAGTCTTCTGCGCCCTCAATCGCCGAGTGGCCTCGCGGCCCCGGTAGCCGGCGCTCGCGTTTGGTGCTGCTCTCTACGTGGGCCGGATCGGCCCGTGCGCGAGAGGCAGGGGCCGATCATGCGCGCACGGGCTAACGAGGTGATATCCCCTCTACCCTTTTCGTTGGGGAATTGGAAACTTCCGTCAGGGGCCGTCTTCGAACACGTCTCGCCTCATGCCTGCCCCAGGGCATCGTCATACTCAAGAAGCTGCTGGCTCTCGTCCACCCCAGGCTCGACAAGGACGACGGCGAGGACAAGAGGCCGCTGTCCGGGGCCGAGGTCCGAGACCACCCAAGGTCGCCCTCGACAGGGGGTGCACCGGGGTCCGTGAAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15037-13810 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGK01000048.1 Streptomyces sp. NRRL F-5639 contig48.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================================================================= ================== 15036 29 100.0 32 ............................. GCTCCGTCCCGGCCCCCGATGGCGTCCGGCTC 14975 29 100.0 32 ............................. GAATTGCGGAAAGCGCACTTTTCCCACAGGGA 14914 29 100.0 32 ............................. GTCCCTTTGTGCCTGTTCCGCGGCTTCCCTTT 14853 29 100.0 33 ............................. GGAACCGGGCTCCATTCCCGGGCCCCTCCGGGC 14791 29 100.0 32 ............................. AAGACCGCGAAGATCAGCTCCGACCTCGCCCA 14730 29 100.0 31 ............................. GCACATGTCAGGGCCCCCAGAGCCGACAATC 14670 29 96.6 32 ...........C................. AAGGACTAGAGCGGGTGCCCTCCTTCGAGCAG 14609 29 93.1 32 ...........CT................ GTGCACTTCTTCGCCGGGGTCGCTCTGGCGGC 14548 29 93.1 32 ...........CT................ AAGGCCCGGTCCCGGGCGCGGAATTTGAGGGC 14487 29 93.1 32 ...........C............G.... CTCCCCGGATACCGGGTTGCCCGTCGTAGCCC 14426 29 82.8 193 ...T........G.........CAG.... AGAGGCGGCCCGGCCAGTCCCCTGCGGGGTGCGGATGGAGGTCGGTCGGTGGGGCCTGGGCCGGCACGGCGTCGCCTGCTGAGGATGCCTCGTTGTTGCACTACTGTCGTCTCCATGCAGTTCGGCCCTCGGTTTGCACCGCTCTGCAGGTCAAGGTTCTGCAAAGCGGTCCGTCAGCCGCAGGTCAGGAAGG 14204 29 93.1 32 ...........CT................ TCCTGCTCATGGGATGGGATCTCCTCTACCGT 14143 29 93.1 32 ...........CT................ TCTCGGTTGTAGTTGACCTTCGACCCGTGTCA 14082 29 93.1 32 ...........CT................ TTTGAGCGGATGGTCAGGTCAACCGGACTGTC 14021 29 96.6 32 ...........C................. GAGCTCGCCAACGACCCGCACACGCGCGGCGA 13960 29 96.6 32 ...........A................. GCATACCGGCCCTCGAACCGGAACGTCACTCT 13899 29 93.1 32 ...........CT................ ACGGCTGGGGGAGGGCCGGGCAGCGCGCTCCG 13838 29 96.6 0 ...........C................. | ========== ====== ====== ====== ============================= ================================================================================================================================================================================================= ================== 18 29 95.6 42 GTGCTCTCCGCTCGCGCGGAGGTGATCCG # Left flank : GCGGAGGTGATCCGTACACGCTGTTCCTGGACCAGGACGCCGCCTTGGCGCTCTCCGCTGGCACGGAGGTAGTCCGAAAGGCCGCCGGTCAGTCCCCTGCGGGATTGCGAATGGAGGTCGGTCGGTGGTGCCTGCGGTGAGCGTCGCTTGCTGCGGTTGCCTTGGTCCTCCTCGACGATGCTGTCTGCTGGCGCGGGATGTGCTCTGGGCCTGCGTTGAGGCGGTCCGGCCCTGAACGGCCCGTCCCTCGCACAGGGCAGTCCGGCTCCTGGTAATTCCCCGCCGCCCTGGAAGTGAGGTTGTCCTGTCTACGCGTCAGATGGCGTTGGCAGTGGGGGCTGGGCGAGTACGGCCTGGCGAGCGTCGCCTGCTGGGGCTGGCTGGGTTGCGGCTCTACGGCTGCGCTACTGTCGTCCCCCGTGCAGTACCACCTTCCGGGTTCGCATCGCTTTACGGGTCAAGGATTTGCAAAGCGGTCCGTGAGTCGCAGGTCAGGAAGG # Right flank : TTGCCCATGGTGTCGCCCGCGCCCCCGCCGGGGTGCTCTGCGCGGAGGTGATCCGGCCCACGATGCGCTGATTGCGGCGCAGGAGGCGAGCATCCGATGGAGTTGATCAGGGCGCCGGATCACGCACGTTTTCGCCGCCCAGCGTGCCTGCGAGTGCCCACCACGACCATCACGCGGGTCTCTACTCAATGACACCGTTACGGATGACGCTGATGCCGTTGTCGCGGTGCCAGTCATGAAGCATCTCGTTCACAGCCTGCTCATCGGGCAGTAGGGCCCCGGTGAGCCTCGACGGCGACTTCACGACAGCGGCTCCGATCATGCCGGGAGGTCGCCTCAGTGACGTCTCGAGCTTTGCTCTCCTCACACGGTCCTGCCCAGCGGCGTCGGCTGCGGGACCGCGGCTGCCGTCCCTGCTTCCCGCGCCGCGTGCTCTGCTCGGGCCCGGCGCAGGGCCGCGGCGTGGGAGGCGTCGGCCTGGCGGCGGTGCTCGGTGCGGG # Questionable array : NO Score: 4.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.90, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCTCGCGCGGAGGTGATCCG # Alternate repeat : GTGCTCTCCGCCTGCGCGGAGGTGATCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGATCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-11.00,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16231-15309 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGK01000048.1 Streptomyces sp. NRRL F-5639 contig48.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================================================== ================== 16230 29 100.0 32 ............................. GACGTGTCGCGGCCGACCATACAGCGCGTCCG 16169 29 100.0 32 ............................. ACGTCGCGGCTGGTGCGGCCGGTGGTGGAGTC 16108 29 100.0 32 ............................. TGACAGTCATCAGGTGCTCTGCCCGCTCCGGG 16047 29 100.0 32 ............................. GCAGCCGCGGGGAGGCTCAGCGAGCCGCCGTG 15986 29 96.6 32 ............................C AGGCAGTCGGTCAGCAGTCCGACGGGCCATAT 15925 29 89.7 32 .C.........C............A.... AGCGTGGACCGCGACTCCCTGGCGGAGTGCCA 15864 29 89.7 32 ...........C.A..........A.... GCCCGTTCCAGCGCCGGCGCACTCGGCATAGC 15803 29 86.2 32 ...........CT...........A.T.. TACCTCTTCACGACGTTGGTCCACCACCAGGA 15742 29 86.2 32 ...........CT...........A.T.. CTGGGCACCGAGGAAGCCCGCGCGGAGATCGA 15681 28 93.1 23 ..C........-................. AACAAGCGTCCCCAGCGCCGCCC A [15668] Deletion [15631] 15629 29 82.8 47 ..C........C.A....A.....A.... CCGCAGAGGTGATCCGTTGCAGCGGTCCGCCTCGTCCGCGGCAGGCG 15553 29 86.2 33 ..C........C.C..........A.... TACACGCTGTTCCTGGACCAGGACGCCGCCTTG CA [15537] 15489 29 82.8 123 .C.........TG..A.......A..... AAAGGCCGCCGGTCAGTCCCCTGCGGGATTGCGAATGGAGGTCGGTCGGTGGTGCCTGCGGTGAGCGTCGCTTGCTGCGGTTGCCTTGGTCCTCCTCGACGATGCTGTCTGCTGGCGCGGGAT 15337 29 75.9 0 .......GG..CT...TT....C...... | ========== ====== ====== ====== ============================= =========================================================================================================================== ================== 14 29 90.7 40 GTGCTCTCCGCACGCGCGGAGGTGGTCCG # Left flank : CCCGGGTTGATCGAATGGCGCGGCGGTGGCCCCGACGTGTGGCAGCCAGGCGACGCCTGATCCGCCTACCGGGCGACGGTGCCAGCCAGATCCACGAGCAGTTGCGCTACAGCCACCAGCAGAGCCCACCGGCCCCAGTCCGCACGGCGTCGGTCCGCGTTCATCTGTCCACCTCCGTGATCCGGTTCCCGGGACCGTAGGGCGGGGCGCGAGGACCCCGGAGCGGGGTATCCACAGGCAGGCCGGATCGTCATACCGGGGGCTCACCCTGTGGACAGCAAGGGCTCTTCGGACTGGATTCTGACCAGCTCCCGCAGCGGCCCAGCTGGCACCCTTCGGCAGGGTTTCGCCCCCTCAAGTGAGAAGGAGTTGGCAGTGGGGGCTGGGCTGCGGCTTCGCGGCTGCACTACGGTCGTCACCGTGCGATCCAACCCTCCGGTCCGCATCACTCTGCTGGTCAAGGATTCGCAATGCGGTCCGTGAGTCGCAGGTCAGAAAGG # Right flank : GCCCTGAACGGCCCGTCCCTCGCACAGGGCAGTCCGGCTCCTGGTAATTCCCCGCCGCCCTGGAAGTGAGGTTGTCCTGTCTACGCGTCAGATGGCGTTGGCAGTGGGGGCTGGGCGAGTACGGCCTGGCGAGCGTCGCCTGCTGGGGCTGGCTGGGTTGCGGCTCTACGGCTGCGCTACTGTCGTCCCCCGTGCAGTACCACCTTCCGGGTTCGCATCGCTTTACGGGTCAAGGATTTGCAAAGCGGTCCGTGAGTCGCAGGTCAGGAAGGGTGCTCTCCGCTCGCGCGGAGGTGATCCGGCTCCGTCCCGGCCCCCGATGGCGTCCGGCTCGTGCTCTCCGCTCGCGCGGAGGTGATCCGGAATTGCGGAAAGCGCACTTTTCCCACAGGGAGTGCTCTCCGCTCGCGCGGAGGTGATCCGGTCCCTTTGTGCCTGTTCCGCGGCTTCCCTTTGTGCTCTCCGCTCGCGCGGAGGTGATCCGGGAACCGGGCTCCATT # Questionable array : NO Score: 4.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:-0.66, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCACGCGCGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGGTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 22438-22226 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGK01000048.1 Streptomyces sp. NRRL F-5639 contig48.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22437 29 100.0 32 ............................. ATGTGGCAGCGCGTCAAGAGGACTCACGGCAT 22376 29 100.0 32 ............................. ACGGCGGCGGCCTCCCAGCCTCACCGGATCGC 22315 29 100.0 32 ............................. TTCAGGTCTCCGGTCGCGCACATCTTCTTGGT 22254 29 93.1 0 .............G..........G.... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTGCTCTCCGCCCACGCGGAGGTGATCCG # Left flank : GTGCTCTCCGCACGCGCGGAGGTGATCCGGCATACCGGCCCTCGAACCGGAACGTCACTCTGTGCTCTCCGCCGGCGCGGAGGTAGTCCGAGAGGCCGCCCGGTCAGTCCCCTGGGGGTTGCGAGTGGAGGTCGGTCGGTGGTGCCTGTGGTGGGCGTCGCTTGTTGAGGTTGCCCTCGGTCCTCTTCGACGATGCTGTCTGCTGGCACGGGGCGTGCGCTGGGCCTGTGTTGAGGCGGTCCGGCCCTGGACGGCACGTTCGTCGGCACAGGGCGGGCCGGCTCCTGGCACTGCCCGCCGCCTCGGTGGTGAGGTTGTCCTGCCGACGCGTCAGACGGCATTGGCAGTGACAGCTGGGCGGGCACGGCCGTGACGGGCTGGTCTGCTGGGACTGGGCGGCGGCTTCGCGGCTGCACTACGGTCGTCACCGTGCAGTGTCCGATGCGCCCCCGGCAGGTCAAGGATCTGCAAAAGGGATGGTGAGCCGCAGGTCAGGAAGA # Right flank : CCGAGCTAGCTGTATTGACCCGCAGGGTTGTTGACTCGGCTGATGGGCGGCCGGCCGCCGAGCGCGGTGTGGCCACGGTGATGGTTGTAGATGTGGATGAACTCCGCCAAGGCGTCGGTGCGTTCAGCGTTGCTGGAGTACGGACGCACATACGCCCATTCGTCGAGAAGGGTGCGGTTCAGGCGCTCCACCTTCCCGTTCGTCTGCGGACGGTAGGGCCGGGTGCGCTTGTGGACGATGCCGGCAGCGTGCAGTGTCTGTGCGAACAGCCTGGATCTGTAGCAGGAGCCGTTGTCGGTGAGGACCCGCTCGACGGTGATGCCGTGCGCGGCGAAGAAGGCGTTGGCTCGCTGCCAGAACTCCGCTGCGGTCTCCTTGCGTTCGTCGGTGAGGGCCTCGCTGTAGGCGAGGCGGGAGTGATCGTCGACGGCGGTGTGGATGAAGCTGTAGCCGATCACGGGGCTGCCGCCTTTGCGTGCGCTGGTCGTGGCTTGCCGGTT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCCCACGCGGAGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGATCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.10,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 23803-22848 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGK01000048.1 Streptomyces sp. NRRL F-5639 contig48.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================================== ================== 23802 29 96.6 32 ...........C................. TGGACGCCCGAGATCATCGAGGGCGGCACCGC 23741 29 96.6 32 ...........C................. CCCGTCGTGACGCCCGCCTCAGCCGGTCACGG 23680 29 96.6 32 ...........C................. CGGCATCTTCGCGTGTCGTCGGTCGATCTCGT 23619 29 96.6 32 ...........C................. AAACCGTCAGCAGTGCCGAACCCGACGAGGAC 23558 29 96.6 88 ...........C................. TGCTTCGTCCATGTCCGGGTCGCTGTCCGTGGGTGCTCTCCGCGAGGTGTTCCGAGCCAGCAATCTGCGGTGCGCTGGTGCGTCGTGC 23441 29 75.9 170 .......GG..C..T.......C.G...A GCCCTCGATGGTCCGCCTGCTGGCACAGCCGTGACGGGCTGGTCTGCTGGGACTGGGCGGCGGCTTCGTGGCTGCACTACGGTCGTCCCCGTGCAGTCCAACCCTCCGGTCCGTATCGCTCTGCTGGTCACGAATGTGCAAAGCGGTCCGTGAGCAGCAGGTCAGGAAGG 23242 29 100.0 32 ............................. CCCGTCGCCGGGCCACCCGGATCCCGGGGGGA 23181 29 100.0 32 ............................. TTCCTGATGGTCAAGGGCGCTTACGGGGTGCA 23120 29 100.0 32 ............................. TACATCGCCGGGTTGCGCTGGCCCTTGTCCCG 23059 29 100.0 32 ............................. AGACCCGGACCACCACCGTCACGAAATCGCCT 22998 29 100.0 32 ............................. CCCGTCGCCGGGCCACCCGGATCCCGGGGGGA 22937 29 100.0 32 ............................. GCATACCGGCCCTCGAACCGGAACGTCACTCT 22876 29 86.2 0 ...........CG..........AG.... | ========== ====== ====== ====== ============================= ========================================================================================================================================================================== ================== 13 29 95.8 48 GTGCTCTCCGCACGCGCGGAGGTGATCCG # Left flank : GGAGGTGGTCCGTGCATCGGGCGGAGCGTGGACACGGTGGACCGGTGCTCTCCGCCCGCGCTCCCGGGTACCGGGCTGCCCGTCGAAGCCCGTGCTCTCCGCCGGCGCTGGAGGTAGTTCCAGAGGCTGCCCGGTCAGTCCCCTGGGGGATTGCGGGTGGAGGTCGGTCGGTGGTGCCTGTGGTGGGCGTCGCTTGTTGAGGTTGCCTCGGTCCTCTTCGACGATGTCTGCCGGCACGGGGGTGCGCTGGGCCTGCGCTGGGGCGGGTCCGGCCCTGGACGGCATGTTCGTCGGCACAGGGGGGGCCGGCTCCTGGTACTGCCCGCCGTCCTGGCGGTGTGGTTTGTTGTGTCGACGCGTCAGAAGGAGTTGGCAGTGGGGGCTGGGCGGCAGCTTCGCGACTGCACTACGGTCGTCACCGTGCAGTCCAACCCTGCGGTTCGCATCGCTCTGCTGGTCAAGACTCTGTAAAGCGGTTAGTGAGCCGCAGGTCAGAAAGG # Right flank : AGAGGCCGCCCGGTCAGTCCCCTGGGGGTTGCGAGTGGAGGTCGGTCGGTGGTGCCTGTGGTGGGCGTCGCTTGTTGAGGTTGCCCTCGGTCCTCTTCGACGATGCTGTCTGCTGGCACGGGGCGTGCGCTGGGCCTGTGTTGAGGCGGTCCGGCCCTGGACGGCACGTTCGTCGGCACAGGGCGGGCCGGCTCCTGGCACTGCCCGCCGCCTCGGTGGTGAGGTTGTCCTGCCGACGCGTCAGACGGCATTGGCAGTGACAGCTGGGCGGGCACGGCCGTGACGGGCTGGTCTGCTGGGACTGGGCGGCGGCTTCGCGGCTGCACTACGGTCGTCACCGTGCAGTGTCCGATGCGCCCCCGGCAGGTCAAGGATCTGCAAAAGGGATGGTGAGCCGCAGGTCAGGAAGAGTGCTCTCCGCCCACGCGGAGGTGATCCGATGTGGCAGCGCGTCAAGAGGACTCACGGCATGTGCTCTCCGCCCACGCGGAGGTGATCCG # Questionable array : NO Score: 4.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-1.46, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCACGCGCGGAGGTGATCCG # Alternate repeat : GTGCTCTCCGCCCGCGCGGAGGTGATCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGATCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.20,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 24991-24032 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGK01000048.1 Streptomyces sp. NRRL F-5639 contig48.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================= ================== 24990 29 100.0 32 ............................. ACGCGCCGGATCTCGGCTGAGGTGATCGGCTC 24929 29 100.0 32 ............................. CATCACCGACGGTCGGGCGGAGCCATGGGGGT 24868 29 100.0 32 ............................. ACGACGTGAGGTCGTGCACTATGGCGGGGACA 24807 29 100.0 32 ............................. CGCTCACCAGCCGGATCAAGGACCTGGAGACC 24746 29 100.0 32 ............................. CCGCGCTCGGGCTGGGCGCGCCGCTGGCCGGC 24685 29 100.0 32 ............................. ATCGTGCCGCGCACGGTGCGCCTGCTGGCGGA 24624 29 100.0 32 ............................. GCCGTGCGGGATGCCGGGCTGGGCGTGCGCAT 24563 29 100.0 32 ............................. GAGGCGCAGCGCCGTCGGGCGCGGCACCACCG 24502 29 100.0 32 ............................. CTGTCCACCGTCGACCCGGTCTTCCTTCCGGA 24441 29 100.0 32 ............................. CGAAATCGTGTTCTGGCTCAGCCCGGTCATGT 24380 29 100.0 32 ............................. CTGCCGATGCTCACCGAGCTCCAAGCCCAGTA 24319 29 93.1 79 ............C...........G.... TGCATCGGGCGGAGCGTGGACACGGTGGACCGGTGCTCTCCGCCCGCGCTCCCGGGTACCGGGCTGCCCGTCGAAGCCC 24211 29 89.7 119 ............G...........T...A GAGGCTGCCCGGTCAGTCCCCTGGGGGATTGCGGGTGGAGGTCGGTCGGTGGTGCCTGTGGTGGGCGTCGCTTGTTGAGGTTGCCTCGGTCCTCTTCGACGATGTCTGCCGGCACGGGG A,T [24186,24193] 24061 29 75.9 0 ....G..GG........T.G..C.G.... | G [24036] ========== ====== ====== ====== ============================= ======================================================================================================================= ================== 14 29 97.0 42 GTGCTCTCCGCCTGCGCGGAGGTGATCCG # Left flank : CTGACAGTTCAAGTCGGGCATGAGGCCATCCTCTGCGCGTGTGACCCGCACTCGCCTCCACTCGGACTGCCGACGCGGAGAGCGTTTGTCGAAACGTTCTAGCGGCCCGTAGCCGCTCAGGCTGAGCCGCGGACGCCTGCGAGTTGAGGAAGACAGACGCTGCCAGTATTCCGATTGCCCGCCTCCAGAACCCGGCCACCCGAAAGGTGGGCGCGGTCCCGAGCGCGGAAGCTGCGAGCGGTGTACCTCCCGCCTGCGCGGGGGCGGTCCGGCCGTCGGTGCCGGGCGGGTGCGCGCATGCTCTCCGTCCATACGGAGGGTGCGGGTTCAGGGCCGTCGGGGGCTTGGCGAATGCGGTGGCGGCGAGCGTCACCTGCTGGGTTCGGGCGGTGGCTCTGCGGCTGCACTACTGTCGTCCCCGTGCCGTCCAACCCTCCGGTTCGCATCGCTCTGCTGGTCAAGGATCTGCAAAGGGGTTAGTGAGCCGCAGGTCAGGAAGG # Right flank : GCCCTGGACGGCATGTTCGTCGGCACAGGGGGGGCCGGCTCCTGGTACTGCCCGCCGTCCTGGCGGTGTGGTTTGTTGTGTCGACGCGTCAGAAGGAGTTGGCAGTGGGGGCTGGGCGGCAGCTTCGCGACTGCACTACGGTCGTCACCGTGCAGTCCAACCCTGCGGTTCGCATCGCTCTGCTGGTCAAGACTCTGTAAAGCGGTTAGTGAGCCGCAGGTCAGAAAGGGTGCTCTCCGCCCGCGCGGAGGTGATCCGTGGACGCCCGAGATCATCGAGGGCGGCACCGCGTGCTCTCCGCCCGCGCGGAGGTGATCCGCCCGTCGTGACGCCCGCCTCAGCCGGTCACGGGTGCTCTCCGCCCGCGCGGAGGTGATCCGCGGCATCTTCGCGTGTCGTCGGTCGATCTCGTGTGCTCTCCGCCCGCGCGGAGGTGATCCGAAACCGTCAGCAGTGCCGAACCCGACGAGGACGTGCTCTCCGCCCGCGCGGAGGTGATC # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.84, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCCTGCGCGGAGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGATCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.10,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 31864-30981 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGK01000048.1 Streptomyces sp. NRRL F-5639 contig48.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 31863 29 100.0 32 ............................. ATCAACACGGTCACACCTCATGCATTACGAGC 31802 29 100.0 32 ............................. ACGGTGATGCGGCCCTTGCGGGGCCCGACCTT 31741 29 100.0 32 ............................. GCACGGATCCCGAACCTGGTGCCCTACGGAAT 31680 29 100.0 32 ............................. GTGCCGCTTGACGGCCTTGCCGGTGGGTGCGA 31619 29 100.0 32 ............................. ATGTTGCGGTCGTTGACCCGTACCAGGGCGGT 31558 29 100.0 32 ............................. AGGACGCTCGGGTGCTGATGTCGGCCCTGGAG 31497 29 100.0 32 ............................. GCCAAAGGCGCCGAGCACCTGTCCAAGCGGCT 31436 29 100.0 32 ............................. TCCGGCCGCCGGGGACGGCTGGGGCCGTGGCA 31375 29 100.0 32 ............................. GCCGAGGCGGAGCGCGCGCTGAGGGCTCCGGG 31314 29 100.0 32 ............................. CAGATCGTGTGCAGCGTGCCCTATGCCGACCG 31253 29 100.0 32 ............................. CCGACGCCCGCCCGGAGGAAGCACGACTGCTG 31192 29 100.0 32 ............................. TCCGGTACCAGGGGGACCGGTTCCGGACTGAT 31131 29 100.0 32 ............................. TCGCACCGCGCCCCCTCCGCCGCCAACCTGAG 31070 29 96.6 32 ........................T.... CGCTGTGCTGGTGTGCCCAGAGCATGCTGCGC 31009 29 89.7 0 .............GA............T. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.1 32 GTCCTCTCCGCCCACGCGGAGGTGATCCG # Left flank : TCCCATACCCCAACCGCGCCAGCGGACCGAACACCGAGAACATCGACGCACGCGCATGCCCCATGCGCTCGACCTCACCCACATCCCTGCGAAGCGCCGCGCTCACACCCTCATACGCCCACGGCACACACCGCTGAAAACCCGGCGACAGCTTCCCCACATCGTGAAGCCCCGCCCAAAACGCCACCAACCTCCTCGCCTCACCCTCAGAAACCCCCAGCCCCTCAGCGATACGCGCACGCTGCCCCGCCGCCAGGAACTCCTCCCACAACGCCGCAGCGATAGCCGCCGTATCCAGCAAATGGAACAACAGCGGATACACCACCCCCCGCTCCTTCAACGCCTTGCCCCACGGCGTCAGGTCCATCCCACCAACACCCGCCACAACCCCTCCCCAGGTACGGTCAACTCGTGCACCTACCTAAACAGCACCCACTGACACTCCCGGAACCCTCGGTCAAGAAACTGCAAAGCCACCGCTAAGCCGCAGGTGAGGAAGT # Right flank : CGGTTCGATCGCGCTTGGGGCACGGGTGCACGTTTCGGCGCAGCCGTCGGCAGTTCGCCGCCTGCCGAGCATGAGCACCACGTATGCGTACCACCAGCAGCTGGCGGCGGTGTGGGAGCAGCCGGTCACGATTGTGTCCAGCTCCTGGCCGTCGGGCATGCGGGCTCGCACCCACGACTTGCGGGGGTGTCTCCTCACCGCCGCACATATTCGAATGTTAGTTTCCGCCCGGTGCTGGCCCGCCGCAGCACTGAGTCCCGATTCGGGGCCGGTCCAGCTGCTTCCCCCGCCGTCCTGATGCTCGTGGAGGGCCCGACGGGCCGGTTTCGGGCAGGCGAGAGGAGCCCGGGCCGGACCGAGGCGGCTCTCACCATGCCCGGTGTGCGGTCACCAGCAGTGTCGCAGCGGGACGAGGGCCGTCTTCGCCGGGGAGGTGGTCGGTGGTGACCCGGGTGAATCCGTTCTGGTCGAGCAGCTTGCCCCATACGGGCTCTTCGAGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCCCACGCGGAGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGATCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.10,-10.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 41105-41439 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGK01000048.1 Streptomyces sp. NRRL F-5639 contig48.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41105 29 100.0 32 ............................. TCGATCCGGATCGCGATGGGGGTGCGGGGGTC 41166 29 100.0 32 ............................. ATCGCTATCGCGGTCCGTTGGCTGGACGAGAA 41227 29 100.0 32 ............................. CCCGGTGGCCTTGGCGTCGGTCCGGGAGATCT 41288 29 100.0 32 ............................. GCCAGGTGTTCCAGATCAGGTGCCCGACGATG 41349 29 100.0 32 ............................. TCCGGCCCGTCCTTGACCAGCCGCAGGGCCGG 41410 29 75.9 0 .............AT.........CGGAA | C [41432] ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.0 32 GTGCTCTCCGCACGCGCGGAGGTGATCCG # Left flank : TCCCTCGCCTCGTCAAAGACATCCAGACCCTGCTGAACCCGCAAGCAGCCGCGGAGCAAGACGACACCGAACGGTTTGACGTCCCACTCGTCGACCTCTGGGACCCCAAACAGGGCGTCGCGCCAGCAGGAATCAACTACGCAGCACCACACTGATATGCCATCAATGACCGTTTTGGCCACCACTGCAGTACCCGACAGCCTCCGCGGTGCTCTCAGCCGCTGGACCATCGAAATCATCCCCGGCATCTTCGTCGGCACCGTCTCAGCCCGCGTACGCGATGAAATTTGGGCGGCAGCATCCGCCGTAGTGGGCGATGGCGCAGCCGTCCTTATCCACCCGGCATCCAACGAGCAAGGCTTCGCACTTCGCACCGCCGGACAACGCCGACGCATCCCCCACGACTTCGACGGACTCACCCTTATCCGCATGCAAGCAGCACAGCAGACCCTTGAGGTCAAGAACAGGTAAAGCCTTTATGGAGCTGCAGGTCAGAAAGG # Right flank : AGAGCTCCCCAGCCTTTTGCCCGGCGACGAGTAGAAGACGCCCCACCTCGGTCTCACGTCAGGCGGCGTGAGACCGAGACGGGGCGACGGTCGCAGTCGTACAGCCGGCTGGTCATGCGGGCATGGAGCTGTCGGTCAGCGTGGCTGTCACATGCCGGGGTGCCATTCCGAGGCGGTGCGGGCGGTGGTGCGGGTGGCCCACCACCATGCGGTGGCGGCGAACGTGGTGGCGGCGGCGAGCAGGAGCAGCATGAAGGAGGCCGGCAGGGTGGCGCCTGCCATGGACACCATGGGGGAGCCCAGCCACCAGGCGGTGAGGCAGCCCAGCAGTGCGGCGAGGACCAGGGGCGCGCCCACCGCCCACAGGGCGGTCGTGGTGAAGACGCGCCGGTTGCCCGCCAGGACGGTGAGGGGTGCGAGCCGTCGTCCCAGGTGGAGGAAGTCTCCGAGGTTGTTGATGAGGGCTGCGAAGGCCAGCAGTGCGATGCCGAGGAAGCCGA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCACGCGCGGAGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGATCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //