Array 1 209-886 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGDB010000023.1 Bifidobacterium longum subsp. longum strain BL 03 contig_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 209 36 100.0 28 .................................... GGGACATTCAGTCTATCCGAGTGGTGAT 273 36 100.0 29 .................................... TTCGATATCGGCTAGGGTATTGCCCGAAA 338 36 100.0 28 .................................... CCAAACAGGCCGCGTGGACTAGCGCCGC 402 36 100.0 28 .................................... GAGGCCCGCGACCTGATTTCCAGCGGCG 466 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 531 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 595 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 659 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 723 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 787 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 851 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================= ================== 11 36 100.0 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : TAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTATCC # Right flank : CGTACATGATGGGGTCCTTGACCTTGTACAAGCTTATCAAGAAGGGTGAATGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 1-741 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGDB010000027.1 Bifidobacterium longum subsp. longum strain BL 03 contig_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 1 36 100.0 28 .................................... CACCAAACCTCTTGGAACACATCGACGA 65 36 100.0 28 .................................... ATCTTGAAATACTTGCGTTGCACGTCCT 129 36 100.0 28 .................................... GTTTGCAGGAACGGAATCTGCACTTCTA 193 36 100.0 29 .................................... TCACGCCGCCGCCGCTCACAGTCCCATGA 258 36 100.0 28 .................................... TACTGCGACCAATGCGGCACGGAAACCA 322 36 100.0 29 .................................... AATCAGGTTTGATACGGTTCCCCTCAACA 387 36 100.0 29 .................................... GTTCGCCAACATGCCATGCCACGTGCGAC 452 36 100.0 29 .................................... AGCCGCGATAACAAGATTCTTCGCCGCGT 517 36 100.0 28 .................................... CGACAGCTGGATGCAGAACGGAGGCAAG 581 36 100.0 28 .................................... AGTTGTTCCCAGTTGTTCCCGGAACAAC 645 36 100.0 28 .................................... TGAAGGCCCGCAAGGAGGAGTTGCAGGA 709 33 91.7 0 .................................--- | ========== ====== ====== ====== ==================================== ============================= ================== 12 36 99.3 28 GCTGGGAATTAGCATTCACCCTTCTTGATAAGCTTG # Left flank : | # Right flank : | # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGAATTAGCATTCACCCTTCTTGATAAGCTTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 268699-266348 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGDB010000005.1 Bifidobacterium longum subsp. longum strain BL 03 contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 268698 36 100.0 28 .................................... GTCTCGCCCATCGTTTCGGAATACACGT 268634 36 100.0 29 .................................... TTTTCAACTGCGATTCAAGCCGCCGAATA 268569 36 100.0 28 .................................... GAGTCCAACGGCTCCCCGTTCCAGCTCC 268505 36 100.0 29 .................................... TGTCAGGACATTGAGAATGAGGTTATTGA 268440 36 100.0 29 .................................... CCACGTATGCGTAGTATAGTCCGTGCGAT 268375 36 100.0 28 .................................... TGGCTACTGCCGTCCGTATCCGCTTGCG 268311 36 100.0 28 .................................... AGGACATTCAGTCTATCCGAGTGTTTAT 268247 36 100.0 29 .................................... TTCGATATCGGCTAGGGTATTGCCCGAAA 268182 36 100.0 28 .................................... CCAAACAGGCCGCGTGGACTAGCGCCGC 268118 36 100.0 28 .................................... GAGGCCCGCGACCTGATTTCCAGCGGCG 268054 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 267989 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 267925 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 267861 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 267797 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 267733 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 267669 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 267605 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 267541 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 267477 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 267413 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 267348 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 267284 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 267220 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 267155 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 267091 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 267027 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 266963 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 266898 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 266833 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 266768 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 266704 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 266639 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 266575 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 266511 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 266447 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 266383 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 37 36 99.6 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : TTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTATC # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //