Array 1 8237-12078 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXGU01000050.1 Xanthomonas oryzae pv. oryzae strain IXO644 contig_50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 8237 31 100.0 36 ............................... GCATCAGAACCGGCCGCGCCCTTCGAATAGTCACCC 8304 31 100.0 36 ............................... TTTAAGACAAAACCCGAGTTTGCCGGCGACTGCTGG 8371 31 100.0 36 ............................... TTACCGAGCCGCTTAGCGATCTCGCCCTTCTTGAAA 8438 31 100.0 34 ............................... AGCGGCCGGACGGCATAGTACTTGACGACGACGC 8503 31 100.0 34 ............................... TCTTCACCATGACCGGCGTCGCCATGCCTTGCAG 8568 31 100.0 34 ............................... CCCGACGCCTGCGGATAGGTGGAGCTATCCCCGC 8633 31 100.0 35 ............................... GCATACCGGCGACCGACTTCGAACGCTTCAAACTC 8699 31 100.0 36 ............................... TCGAGCGCCGCCATCCGGCGCTTCGTTATGAGCTCG 8766 31 100.0 37 ............................... GCCTCGTGATTAGGCGCATGCGTGGACGCCCGTACAC 8834 31 100.0 35 ............................... GAGCGCGGCCGGCACTCAGGCATCGCAACCGACAG 8900 31 100.0 35 ............................... AAGGTCCGTCCGTATTACAGCTGACCAACCCAGCA 8966 31 100.0 34 ............................... CTCCCTTGCGGCTGAACTCGGGATCGAGTGTCAC 9031 31 100.0 34 ............................... CTCCCTTGCGGCTGAACTCGGGATCGAGTGTCAC 9096 31 100.0 38 ............................... CTCCTCGAGGCGAACGATTGCCTCGGCGAACACAGCCG 9165 31 100.0 34 ............................... CCGTCCCGATACCCACAGTAATTGCATTGCACCG 9230 31 100.0 33 ............................... GGATTACTTTACGAGCACCCAAAGAGTTGGCTT 9294 31 100.0 33 ............................... CTGCGTCAGATCGGCGAGCGGATCGGGCGGCGG 9358 31 100.0 34 ............................... CTGCACCGCCACCAATACCGCCAAGCACAGTGCT 9423 31 100.0 34 ............................... ATGGCCAGAAAAACACATTGACCATGTGAATGCA 9488 31 100.0 34 ............................... AACCAGTGGAGAGGCAAGAATGAATGCAGTATTT 9553 31 100.0 36 ............................... CAATACACCCCAGTCGCGCCAGAGGTGTTGTTAGAC 9620 31 100.0 35 ............................... CAGCGCAACATGGTGACGGTGCTGGCGGAAGAGCG 9686 31 100.0 36 ............................... AACGACAGTGCCAGCGTGGCTGAGAATGCCCCTATG 9753 31 100.0 35 ............................... CACGGGTACAAAGTCTCCATCATCCGTCTCGCGCT 9819 31 100.0 35 ............................... CCAGACCAAAGGAAGTCGTTCCTTTGGTTGAACAA 9885 31 100.0 35 ............................... AACTGGGCATCACCCAAGCAACGCTCAGCGCTACT 9951 31 100.0 35 ............................... GTCCGCCTGGACCGGTCCGGCTGTTGGTACACTGC 10017 31 100.0 35 ............................... GTTCGATGCAAATGGAATTGCAACAGTAGACGCAC 10083 31 100.0 34 ............................... GTCATCGTCGTTCCCGTCCCGATACCCACAGTAA 10148 31 100.0 34 ............................... TTCGCCGGCTTGGGCCTGGAACTTGACGAAAAGG 10213 31 100.0 35 ............................... AATGTATACAGGTGAAAATTCAGTGGCGCATCGAC 10279 31 100.0 35 ............................... AGCTGCAAGGGCGCGCACTTGTTTGGCCAACTCCG 10345 31 100.0 34 ............................... CTGCACGCGGTTGAACGTCGTCCACAGGTCCGGC 10410 31 100.0 33 ............................... CTGTCAATGACTCTTAGCCCATGGTTGCGGCGC 10474 31 100.0 35 ............................... TAGTTGTGACGATGGATGCTTCTACAATTTCACCA 10540 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 10605 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 10672 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 10738 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 10805 31 100.0 35 ............................... TTGAGATAAGCGGCGATCTGGTCGGCCGTGTAACC 10871 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 10937 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 11002 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 11066 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 11131 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 11196 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 11262 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 11328 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 11394 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 11458 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 11525 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 11590 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 11655 31 100.0 35 ............................... GCCTATGACCCGGATGCAAGCTACTTTGATGCAGC 11721 31 100.0 34 ............................... AGCCATCAACTGTTTGGCGATCTCCGCAACGTCG 11786 31 100.0 34 ............................... CAACACCGGGATGCCGGTGCTTGCCAGCTCCCGT 11851 31 100.0 35 ............................... TGCGCATCACCCAGTAGATCGACCGTGCTTCGATT 11917 31 100.0 35 ............................... TCCACGTCCAGCGACCGCATGCCGCTAACTGCCTT 11983 31 100.0 34 ............................... ATAATCGTAGGTCCTAGGTTCAGAGGTTGGGTAC 12048 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 59 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : ATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAATCTCGTCGGGATTCAAGTCCGGCGCGTAACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCACGCCACCATCCACACAAAACAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //